RLG00000029153

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0016987
Physical Location & Seq
Reverse (-)
33768577 .. 33773237
4661 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029153

Sequence Viewer

Length: 654 bp
ATGGACCCAAAAGCCGTGAAATTGGACCTGGTCCTTATACTCGATTGTGGCTCCCAATACACCCACCTCATCACTCGCCGCATCCGATCGCTCTCCATCTTCTACCTCACAATCTCTGGGATTTTCGGGTCCAAGAGGGTTGAGGATAGGCAGGTGGTCTGGATGAGCTATGGGATTAGGTCGCCAAGCTACCCCAGGGGTTCCAAGAGGTGGCGCAGAGCCAGCAAGGAGTGGTCGCTACCATCGAAATCCCCGAAAGGAGGTTCTATGGGCTGGAGTACCACCCTGAGTGTTCAGGTTCTAAAAGTTCTAGAGACTCGCAAAAAAATGCTGCAGAAAGAGCAAGGTATGGCTTTTACTCGTGCTGTAGCGGTAGGTTTTGATGTTGGTCATTTGCCACCATTAATATCATTTGCTGAATGCTTTGGGACTTCATGCTTGATGGATGCTTGTAGAAGATATAAGGAACTGTGGAAACGAAAGCATGAGATTGGCCAATGGCTTGAAATTGAAGCAGCTGAAGCAATGTCTAACCGAGCAGACTTCTCTGCCATGAATGCATCGGGCATAGTGCTTTTAAATATGACCATCAAGCCAAATGAGTTGGCAGAGAATAATGGAAAAGCTACTTATGCAGGTTCTACAAGGTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

218

Amino Acids

24.44

Weight (kDa)

9.87

Isoelectric Point (pI)

56.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 142
Acc36I ACCTGC 2 cut(s) 142, 626
AccB7I CCANNNNNTGG 1 cut(s) 210
AciI CCGC 2 cut(s) 79, 371
AcoI YGGCCR 1 cut(s) 493
AcuI CTGAAG 1 cut(s) 540
AfaI GTAC 1 cut(s) 280
AfiI CCNNNNNNNGG 2 cut(s) 210, 260
AgsI TTSAA 2 cut(s) 506, 512
AjnI CCWGG 2 cut(s) 27, 194
AluBI AGCT 4 cut(s) 168, 189, 518, 626
AluI AGCT 4 cut(s) 168, 189, 518, 626
Alw26I GTCTC 1 cut(s) 308
AoxI GGCC 1 cut(s) 493
ApeKI GCWGC 2 cut(s) 331, 515
AseI ATTAAT 1 cut(s) 404
AspLEI GCGC 1 cut(s) 216
AspS9I GGNCC 4 cut(s) 4, 25, 31, 129
AvaII GGWCC 4 cut(s) 4, 25, 31, 129
BalI TGGCCA 1 cut(s) 495
BauI CACGAG 1 cut(s) 360
BbvI GCAGC 2 cut(s) 318, 527
BccI CCATC 4 cut(s) 104, 250, 436, 596
BciT130I CCWGG 2 cut(s) 29, 196
BcoDI GTCTC 1 cut(s) 308
BfaI CTAG 1 cut(s) 311
BfmI CTRYAG 2 cut(s) 332, 366
BfuAI ACCTGC 2 cut(s) 142, 626
BisI GCNGC 3 cut(s) 79, 332, 516
BlsI GCNGC 3 cut(s) 80, 333, 517
Bme1390I CCNGG 2 cut(s) 29, 196
Bme18I GGWCC 4 cut(s) 4, 25, 31, 129
BmgT120I GGNCC 4 cut(s) 4, 25, 31, 129
BmiI GGNNCC 4 cut(s) 6, 52, 130, 202
BmrFI CCNGG 2 cut(s) 29, 196
BmsI GCATC 3 cut(s) 90, 436, 569
BpmI CTGGAG 1 cut(s) 295
BsaJI CCNNGG 2 cut(s) 194, 195
Bsc4I CCNNNNNNNGG 2 cut(s) 210, 260
Bse3DI GCAATG 1 cut(s) 531
BseBI CCWGG 2 cut(s) 29, 196
BseDI CCNNGG 2 cut(s) 194, 195
BseGI GGATG 3 cut(s) 81, 168, 451
BseLI CCNNNNNNNGG 2 cut(s) 210, 260
BseMI GCAATG 1 cut(s) 531
BseMII CTCAG 1 cut(s) 278
BseXI GCAGC 2 cut(s) 318, 527
Bsh1285I CGRYCG 1 cut(s) 89
BshFI GGCC 1 cut(s) 495
BsiEI CGRYCG 1 cut(s) 89
BslFI GGGAC 1 cut(s) 442
BslI CCNNNNNNNGG 2 cut(s) 210, 260
BsmAI GTCTC 1 cut(s) 308
BsmFI GGGAC 1 cut(s) 442
BsmI GAATGC 2 cut(s) 425, 562
BsnI GGCC 1 cut(s) 495
Bsp143I GATC 1 cut(s) 86
BspACI CCGC 2 cut(s) 79, 371
BspANI GGCC 1 cut(s) 495
BspCNI CTCAG 1 cut(s) 279
BspLI GGNNCC 4 cut(s) 6, 52, 130, 202
BspMAI CTGCAG 1 cut(s) 336
BspMI ACCTGC 2 cut(s) 142, 626
BsrDI GCAATG 1 cut(s) 531
BssECI CCNNGG 2 cut(s) 194, 195
BssMI GATC 1 cut(s) 86
BssSI CACGAG 1 cut(s) 360
Bst2BI CACGAG 1 cut(s) 360
Bst2UI CCWGG 2 cut(s) 29, 196
Bst4CI ACNGT 1 cut(s) 471
BstC8I GCNNGC 1 cut(s) 223
BstDEI CTNAG 1 cut(s) 287
BstF5I GGATG 3 cut(s) 81, 168, 451
BstHHI GCGC 1 cut(s) 216
BstKTI GATC 1 cut(s) 89
BstMAI GTCTC 1 cut(s) 308
BstMBI GATC 1 cut(s) 86
BstMCI CGRYCG 1 cut(s) 89
BstMWI GCNNNNNNNGC 5 cut(s) 222, 340, 521, 557, 632
BstNI CCWGG 2 cut(s) 29, 196
BstSCI CCNGG 2 cut(s) 27, 194
BstSFI CTRYAG 2 cut(s) 332, 366
BstV1I GCAGC 2 cut(s) 318, 527
BsuRI GGCC 1 cut(s) 495
BtsCI GGATG 3 cut(s) 81, 168, 451
BveI ACCTGC 2 cut(s) 142, 626
Cac8I GCNNGC 1 cut(s) 223
CfoI GCGC 1 cut(s) 216
Cfr13I GGNCC 4 cut(s) 4, 25, 31, 129
CsiI ACCWGGT 1 cut(s) 27
Csp6I GTAC 1 cut(s) 279
CviAII CATG 3 cut(s) 435, 485, 553
CviQI GTAC 1 cut(s) 279
DdeI CTNAG 1 cut(s) 287
DpnI GATC 1 cut(s) 88
DpnII GATC 1 cut(s) 86
DraI TTTAAA 1 cut(s) 579
EaeI YGGCCR 1 cut(s) 493
Eco47I GGWCC 4 cut(s) 4, 25, 31, 129
Eco57I CTGAAG 1 cut(s) 540
EcoRII CCWGG 2 cut(s) 27, 194
EcoT22I ATGCAT 1 cut(s) 562
FaeI CATG 3 cut(s) 438, 488, 556
FaqI GGGAC 1 cut(s) 442
FatI CATG 3 cut(s) 434, 484, 552
Fnu4HI GCNGC 3 cut(s) 79, 332, 516
FokI GGATG 3 cut(s) 68, 175, 458
Fsp4HI GCNGC 3 cut(s) 79, 332, 516
FspBI CTAG 1 cut(s) 311
GlaI GCGC 1 cut(s) 215
GluI GCNGC 3 cut(s) 79, 332, 516
GsuI CTGGAG 1 cut(s) 295
HaeIII GGCC 1 cut(s) 495
HhaI GCGC 1 cut(s) 216
Hin1II CATG 3 cut(s) 438, 488, 556
Hin6I GCGC 1 cut(s) 214
HinP1I GCGC 1 cut(s) 214
HinfI GANTC 1 cut(s) 316
Hpy188I TCNGA 1 cut(s) 86
Hpy188III TCNNGA 2 cut(s) 160, 311
HpyCH4III ACNGT 1 cut(s) 471
HpyCH4V TGCA 3 cut(s) 334, 560, 635
HpyF10VI GCNNNNNNNGC 5 cut(s) 222, 340, 521, 557, 632
HpyF3I CTNAG 1 cut(s) 287
Hsp92II CATG 3 cut(s) 438, 488, 556
HspAI GCGC 1 cut(s) 214
Kzo9I GATC 1 cut(s) 86
LmnI GCTCC 1 cut(s) 56
Lsp1109I GCAGC 2 cut(s) 318, 527
LweI GCATC 3 cut(s) 90, 436, 569
MabI ACCWGGT 1 cut(s) 27
MaeI CTAG 1 cut(s) 311
MalI GATC 1 cut(s) 88
MboI GATC 1 cut(s) 86
MboII GAAGA 2 cut(s) 91, 468
MlsI TGGCCA 1 cut(s) 495
MluCI AATT 2 cut(s) 20, 507
MluNI TGGCCA 1 cut(s) 495
MlyI GAGTC 1 cut(s) 310
MnlI CCTC 6 cut(s) 77, 116, 129, 136, 201, 254
Mox20I TGGCCA 1 cut(s) 495
Mph1103I ATGCAT 1 cut(s) 562
MscI TGGCCA 1 cut(s) 495
MseI TTAA 2 cut(s) 404, 578
Msp20I TGGCCA 1 cut(s) 495
MspA1I CMGCKG 1 cut(s) 518
MspR9I CCNGG 2 cut(s) 29, 196
Mva1269I GAATGC 2 cut(s) 425, 562
MvaI CCWGG 2 cut(s) 29, 196
MwoI GCNNNNNNNGC 5 cut(s) 222, 340, 521, 557, 632
NdeII GATC 1 cut(s) 86
NlaIII CATG 3 cut(s) 438, 488, 556
NlaIV GGNNCC 4 cut(s) 6, 52, 130, 202
NsiI ATGCAT 1 cut(s) 562
PaqCI CACCTGC 1 cut(s) 142
PasI CCCWGGG 1 cut(s) 195
PcsI WCGNNNNNNNCGW 3 cut(s) 82, 242, 251
PctI GAATGC 2 cut(s) 425, 562
PflFI GACNNNGTC 1 cut(s) 29
PflMI CCANNNNNTGG 1 cut(s) 210
PkrI GCNGC 3 cut(s) 80, 333, 517
Ple19I CGATCG 1 cut(s) 89
PleI GAGTC 1 cut(s) 310
PpsI GAGTC 1 cut(s) 310
PshBI ATTAAT 1 cut(s) 404
Psp6I CCWGG 2 cut(s) 27, 194
PspGI CCWGG 2 cut(s) 27, 194
PspN4I GGNNCC 4 cut(s) 6, 52, 130, 202
PspPI GGNCC 4 cut(s) 4, 25, 31, 129
PstI CTGCAG 1 cut(s) 336
PsyI GACNNNGTC 1 cut(s) 29
PvuI CGATCG 1 cut(s) 89
PvuII CAGCTG 1 cut(s) 518
RsaI GTAC 1 cut(s) 280
RsaNI GTAC 1 cut(s) 279
SaqAI TTAA 2 cut(s) 404, 578
SatI GCNGC 3 cut(s) 79, 332, 516
Sau3AI GATC 1 cut(s) 86
Sau96I GGNCC 4 cut(s) 4, 25, 31, 129
SchI GAGTC 1 cut(s) 310
ScrFI CCNGG 2 cut(s) 29, 196
SexAI ACCWGGT 1 cut(s) 27
SfaNI GCATC 3 cut(s) 90, 436, 569
SfcI CTRYAG 2 cut(s) 332, 366
SinI GGWCC 4 cut(s) 4, 25, 31, 129
Sse9I AATT 2 cut(s) 20, 507
SsiI CCGC 2 cut(s) 79, 371
SspMI CTAG 1 cut(s) 311
StyD4I CCNGG 2 cut(s) 27, 194
TaaI ACNGT 1 cut(s) 471
TaqI TCGA 2 cut(s) 42, 245
TasI AATT 2 cut(s) 20, 507
TauI GCSGC 1 cut(s) 81
Tru1I TTAA 2 cut(s) 404, 578
Tru9I TTAA 2 cut(s) 404, 578
TseI GCWGC 2 cut(s) 331, 515
TspDTI ATGAA 2 cut(s) 423, 569
Tth111I GACNNNGTC 1 cut(s) 29
Van91I CCANNNNNTGG 1 cut(s) 210
VpaK11BI GGWCC 4 cut(s) 4, 25, 31, 129
VspI ATTAAT 1 cut(s) 404
XbaI TCTAGA 1 cut(s) 310
XspI CTAG 1 cut(s) 311
Zsp2I ATGCAT 1 cut(s) 562
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.