Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000247.1

Orthogroup ID

OG0016987

Physical Location & Seq

Genomic Coordinates Reverse (-)

265088 .. 268714

Gene Structure 3627 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000247.1_g000056.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

atggacccaaaagccgtgaaattggacctggtccttatcctcgattgtggctcccaatacacccaccttatcactcgccgcatccgatccctctccgtcttctacctcacaatctccggtatcagccccctcaaggccatcacggacctcaaccccagcgtcaccatcctttccgtgggccccacttcatccacacagacggctcccccagtttccctctcgggttcgcggagtggactgagggtggttactgttggggagaagcaggagtatggcaagatggagattgtggtggagagcaattcggggattttcgggtccaagagggttggggataggcaggtggtctggatgagccatgggattaggtcgccaagctaccccaggggttccaggagatggcgcagagccagcaaggagtgggatgctcgtagaagatataatgaactgtggaaacgaaagcatgagactggccaatggcttgaaattgaagcagctaaagcaatgtctaaccgagcagacttctctgccatgaatgcatcgggcatagtgcttttaaatatgaccaccaagccaaatgagttggcagagaataatggaaaagctacttatgcaggttctacaaggtcgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003921 GO:0003922 GO:0006139 GO:0006163 GO:0006164 GO:0006177 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009163 GO:0009165 GO:0009167 GO:0009168 GO:0009259 GO:0009260 GO:0009987 GO:0016874 GO:0016879 GO:0016884 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0034404 GO:0034641 GO:0034654 GO:0042278 GO:0042451 GO:0042455 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0046037 GO:0046128 GO:0046129 GO:0046390 GO:0046483 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901068 GO:1901070 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00230 ko00983 ko01100 map00230 map00983 map01100

Pfam Domains

Protein Families

GATase GMP_synt_C NAD_synthase

Protein Analysis

210

Amino Acids

23.3

Weight (kDa)

10.17

Isoelectric Point (pI)

58.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016987)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0123531 RchiOBHm_Chr3g0486791
rosa_laevigata	RLG00000029153
rosa_multiflora	Rmu_sc0000247.1_g000056 Rmu_sc0003413.1_g000048 Rmu_ssc0000091.1_g000005
rosa_roxburghii	Rroxscaffold_2G00091800
rosa_rugosa	Rorug02G0461000
rosa_samantha	Rh2AG305000 Rh2AG418600 Rh2BG313200
rosa_wichuraiana	Rw2G024450 Rw2G029180 Rw7G003540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	331
Acc36I	ACCTGC	2 cut(s)	331, 605
AccB7I	CCANNNNNTGG	1 cut(s)	399
AccII	CGCG	1 cut(s)	229
AciI	CCGC	2 cut(s)	79, 229
AclWI	GGATC	1 cut(s)	81
AcoI	YGGCCR	1 cut(s)	472
AfiI	CCNNNNNNNGG	3 cut(s)	133, 175, 399
AgsI	TTSAA	2 cut(s)	485, 491
AjnI	CCWGG	3 cut(s)	27, 383, 392
AluBI	AGCT	3 cut(s)	378, 497, 605
AluI	AGCT	3 cut(s)	378, 497, 605
Alw26I	GTCTC	1 cut(s)	461
AlwI	GGATC	1 cut(s)	81
Ama87I	CYCGRG	1 cut(s)	220
AoxI	GGCC	3 cut(s)	135, 178, 472
ApaI	GGGCCC	1 cut(s)	182
ApeKI	GCWGC	1 cut(s)	494
AspLEI	GCGC	1 cut(s)	405
AspS9I	GGNCC	7 cut(s)	4, 25, 31, 145, 178, 179, 318
AsuHPI	GGTGA	1 cut(s)	154
AvaI	CYCGRG	1 cut(s)	220
AvaII	GGWCC	5 cut(s)	4, 25, 31, 145, 318
BaeGI	GKGCMC	1 cut(s)	182
BalI	TGGCCA	1 cut(s)	474
BanII	GRGCYC	1 cut(s)	182
BbsI	GAAGAC	1 cut(s)	91
BbvI	GCAGC	1 cut(s)	506
BccI	CCATC	4 cut(s)	146, 173, 274, 393
BceAI	ACGGC	1 cut(s)	216
BciT130I	CCWGG	3 cut(s)	29, 385, 394
BcoDI	GTCTC	1 cut(s)	461
BfuAI	ACCTGC	2 cut(s)	331, 605
BisI	GCNGC	2 cut(s)	79, 495
BlsI	GCNGC	2 cut(s)	80, 496
Bme1390I	CCNGG	3 cut(s)	29, 385, 394
Bme18I	GGWCC	5 cut(s)	4, 25, 31, 145, 318
BmeT110I	CYCGRG	1 cut(s)	220
BmgT120I	GGNCC	7 cut(s)	4, 25, 31, 145, 178, 179, 318
BmiI	GGNNCC	7 cut(s)	6, 52, 180, 181, 204, 319, 391
BmrFI	CCNGG	3 cut(s)	29, 385, 394
BmrI	ACTGGG	1 cut(s)	203
BmsI	GCATC	3 cut(s)	90, 415, 548
BmuI	ACTGGG	1 cut(s)	203
BpiI	GAAGAC	1 cut(s)	91
BpuEI	CTTGAG	1 cut(s)	116
BsaJI	CCNNGG	4 cut(s)	174, 358, 383, 384
BsaWI	WCCGGW	1 cut(s)	116
Bsc4I	CCNNNNNNNGG	3 cut(s)	133, 175, 399
Bse1I	ACTGG	2 cut(s)	209, 475
Bse3DI	GCAATG	1 cut(s)	510
BseBI	CCWGG	3 cut(s)	29, 385, 394
BseDI	CCNNGG	4 cut(s)	174, 358, 383, 384
BseGI	GGATG	5 cut(s)	81, 165, 188, 357, 430
BseLI	CCNNNNNNNGG	3 cut(s)	133, 175, 399
BseMI	GCAATG	1 cut(s)	510
BseMII	CTCAG	1 cut(s)	230
BseNI	ACTGG	2 cut(s)	209, 475
BseSI	GKGCMC	1 cut(s)	182
BseXI	GCAGC	1 cut(s)	506
BseYI	CCCAGC	1 cut(s)	155
Bsh1236I	CGCG	1 cut(s)	229
BshFI	GGCC	3 cut(s)	137, 180, 474
BsiHKCI	CYCGRG	1 cut(s)	220
BsiSI	CCGG	1 cut(s)	117
BslI	CCNNNNNNNGG	3 cut(s)	133, 175, 399
BsmAI	GTCTC	1 cut(s)	461
BsmI	GAATGC	1 cut(s)	541
BsnI	GGCC	3 cut(s)	137, 180, 474
BsoBI	CYCGRG	1 cut(s)	220
Bsp120I	GGGCCC	1 cut(s)	178
Bsp1286I	GDGCHC	1 cut(s)	182
Bsp143I	GATC	1 cut(s)	86
Bsp19I	CCATGG	1 cut(s)	358
BspACI	CCGC	2 cut(s)	79, 229
BspANI	GGCC	3 cut(s)	137, 180, 474
BspCNI	CTCAG	1 cut(s)	231
BspFNI	CGCG	1 cut(s)	229
BspLI	GGNNCC	7 cut(s)	6, 52, 180, 181, 204, 319, 391
BspMI	ACCTGC	2 cut(s)	331, 605
BspPI	GGATC	1 cut(s)	81
BsrDI	GCAATG	1 cut(s)	510
BsrI	ACTGG	2 cut(s)	209, 475
BssECI	CCNNGG	4 cut(s)	174, 358, 383, 384
BssMI	GATC	1 cut(s)	86
BssT1I	CCWWGG	1 cut(s)	358
Bst2UI	CCWGG	3 cut(s)	29, 385, 394
Bst4CI	ACNGT	2 cut(s)	253, 450
BstC8I	GCNNGC	1 cut(s)	412
BstDEI	CTNAG	1 cut(s)	239
BstDSI	CCRYGG	2 cut(s)	174, 358
BstF5I	GGATG	5 cut(s)	81, 165, 188, 357, 430
BstFNI	CGCG	1 cut(s)	229
BstHHI	GCGC	1 cut(s)	405
BstKTI	GATC	1 cut(s)	89
BstMAI	GTCTC	1 cut(s)	461
BstMBI	GATC	1 cut(s)	86
BstMWI	GCNNNNNNNGC	4 cut(s)	411, 500, 536, 611
BstNI	CCWGG	3 cut(s)	29, 385, 394
BstSCI	CCNGG	3 cut(s)	27, 383, 392
BstSLI	GKGCMC	1 cut(s)	182
BstUI	CGCG	1 cut(s)	229
BstV1I	GCAGC	1 cut(s)	506
BstV2I	GAAGAC	1 cut(s)	91
BsuRI	GGCC	3 cut(s)	137, 180, 474
BtgI	CCRYGG	2 cut(s)	174, 358
BtsCI	GGATG	5 cut(s)	81, 165, 188, 357, 430
BveI	ACCTGC	2 cut(s)	331, 605
Cac8I	GCNNGC	1 cut(s)	412
CfoI	GCGC	1 cut(s)	405
Cfr13I	GGNCC	7 cut(s)	4, 25, 31, 145, 178, 179, 318
CseI	GACGC	1 cut(s)	148
CsiI	ACCWGGT	1 cut(s)	27
CviAII	CATG	3 cut(s)	359, 464, 532
DdeI	CTNAG	1 cut(s)	239
DpnI	GATC	1 cut(s)	88
DpnII	GATC	1 cut(s)	86
DraI	TTTAAA	1 cut(s)	558
EaeI	YGGCCR	1 cut(s)	472
Eco130I	CCWWGG	1 cut(s)	358
Eco24I	GRGCYC	1 cut(s)	182
Eco47I	GGWCC	5 cut(s)	4, 25, 31, 145, 318
Eco88I	CYCGRG	1 cut(s)	220
EcoO109I	RGGNCCY	1 cut(s)	179
EcoRII	CCWGG	3 cut(s)	27, 383, 392
EcoT14I	CCWWGG	1 cut(s)	358
EcoT22I	ATGCAT	1 cut(s)	541
EcoT38I	GRGCYC	1 cut(s)	182
ErhI	CCWWGG	1 cut(s)	358
FaeI	CATG	3 cut(s)	362, 467, 535
FaiI	YATR	8 cut(s)	273, 360, 441, 465, 533, 548, 563, 612
FatI	CATG	3 cut(s)	358, 463, 531
Fnu4HI	GCNGC	2 cut(s)	79, 495
FokI	GGATG	5 cut(s)	68, 152, 175, 364, 437
FriOI	GRGCYC	1 cut(s)	182
Fsp4HI	GCNGC	2 cut(s)	79, 495
GlaI	GCGC	1 cut(s)	404
GluI	GCNGC	2 cut(s)	79, 495
GsaI	CCCAGC	1 cut(s)	159
HaeIII	GGCC	3 cut(s)	137, 180, 474
HapII	CCGG	1 cut(s)	117
HgaI	GACGC	1 cut(s)	148
HhaI	GCGC	1 cut(s)	405
Hin1II	CATG	3 cut(s)	362, 467, 535
Hin6I	GCGC	1 cut(s)	403
HinP1I	GCGC	1 cut(s)	403
HpaII	CCGG	1 cut(s)	117
HphI	GGTGA	1 cut(s)	154
Hpy166II	GTNNAC	1 cut(s)	236
Hpy188I	TCNGA	1 cut(s)	86
Hpy188III	TCNNGA	1 cut(s)	349
Hpy8I	GTNNAC	1 cut(s)	236
HpyCH4III	ACNGT	2 cut(s)	253, 450
HpyCH4V	TGCA	2 cut(s)	539, 614
HpyF10VI	GCNNNNNNNGC	4 cut(s)	411, 500, 536, 611
HpyF3I	CTNAG	1 cut(s)	239
Hsp92II	CATG	3 cut(s)	362, 467, 535
HspAI	GCGC	1 cut(s)	403
Kzo9I	GATC	1 cut(s)	86
LmnI	GCTCC	2 cut(s)	56, 208
Lsp1109I	GCAGC	1 cut(s)	506
LweI	GCATC	3 cut(s)	90, 415, 548
MabI	ACCWGGT	1 cut(s)	27
MaeIII	GTNAC	2 cut(s)	160, 247
MalI	GATC	1 cut(s)	88
MboI	GATC	1 cut(s)	86
MboII	GAAGA	2 cut(s)	91, 447
MhlI	GDGCHC	1 cut(s)	182
MlsI	TGGCCA	1 cut(s)	474
MluCI	AATT	3 cut(s)	20, 301, 486
MluNI	TGGCCA	1 cut(s)	474
MnlI	CCTC	8 cut(s)	50, 101, 116, 140, 158, 227, 234, 318
Mox20I	TGGCCA	1 cut(s)	474
Mph1103I	ATGCAT	1 cut(s)	541
MscI	TGGCCA	1 cut(s)	474
MseI	TTAA	1 cut(s)	557
Msp20I	TGGCCA	1 cut(s)	474
MspI	CCGG	1 cut(s)	117
MspR9I	CCNGG	3 cut(s)	29, 385, 394
Mva1269I	GAATGC	1 cut(s)	541
MvaI	CCWGG	3 cut(s)	29, 385, 394
MvnI	CGCG	1 cut(s)	229
MwoI	GCNNNNNNNGC	4 cut(s)	411, 500, 536, 611
NcoI	CCATGG	1 cut(s)	358
NdeII	GATC	1 cut(s)	86
NlaIII	CATG	3 cut(s)	362, 467, 535
NlaIV	GGNNCC	7 cut(s)	6, 52, 180, 181, 204, 319, 391
NmuCI	GTSAC	1 cut(s)	160
NsiI	ATGCAT	1 cut(s)	541
PaqCI	CACCTGC	1 cut(s)	331
PasI	CCCWGGG	1 cut(s)	384
PcsI	WCGNNNNNNNCGW	1 cut(s)	82
PctI	GAATGC	1 cut(s)	541
PflFI	GACNNNGTC	1 cut(s)	29
PflMI	CCANNNNNTGG	1 cut(s)	399
PfoI	TCCNGGA	1 cut(s)	392
PkrI	GCNGC	2 cut(s)	80, 496
Psp6I	CCWGG	3 cut(s)	27, 383, 392
PspFI	CCCAGC	1 cut(s)	155
PspGI	CCWGG	3 cut(s)	27, 383, 392
PspN4I	GGNNCC	7 cut(s)	6, 52, 180, 181, 204, 319, 391
PspOMI	GGGCCC	1 cut(s)	178
PspPI	GGNCC	7 cut(s)	4, 25, 31, 145, 178, 179, 318
PsyI	GACNNNGTC	1 cut(s)	29
SaqAI	TTAA	1 cut(s)	557
SatI	GCNGC	2 cut(s)	79, 495
Sau3AI	GATC	1 cut(s)	86
Sau96I	GGNCC	7 cut(s)	4, 25, 31, 145, 178, 179, 318
ScrFI	CCNGG	3 cut(s)	29, 385, 394
SduI	GDGCHC	1 cut(s)	182
SexAI	ACCWGGT	1 cut(s)	27
SfaNI	GCATC	3 cut(s)	90, 415, 548
SinI	GGWCC	5 cut(s)	4, 25, 31, 145, 318
SmlI	CTYRAG	1 cut(s)	131
SmoI	CTYRAG	1 cut(s)	131
Sse9I	AATT	3 cut(s)	20, 301, 486
SsiI	CCGC	2 cut(s)	79, 229
StyD4I	CCNGG	3 cut(s)	27, 383, 392
StyI	CCWWGG	1 cut(s)	358
TaaI	ACNGT	2 cut(s)	253, 450
TaqI	TCGA	1 cut(s)	42
TasI	AATT	3 cut(s)	20, 301, 486
TauI	GCSGC	1 cut(s)	81
Tru1I	TTAA	1 cut(s)	557
Tru9I	TTAA	1 cut(s)	557
TseFI	GTSAC	1 cut(s)	160
TseI	GCWGC	1 cut(s)	494
Tsp45I	GTSAC	1 cut(s)	160
TspDTI	ATGAA	3 cut(s)	177, 459, 548
TspGWI	ACGGA	3 cut(s)	85, 158, 163
Tth111I	GACNNNGTC	1 cut(s)	29
Van91I	CCANNNNNTGG	1 cut(s)	399
VpaK11BI	GGWCC	5 cut(s)	4, 25, 31, 145, 318
XcmI	CCANNNNNNNNNTGG	1 cut(s)	172
Zsp2I	ATGCAT	1 cut(s)	541

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.