Rh2AG418600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0016987
Physical Location & Seq
Reverse (-)
62201192 .. 62204859
3668 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG418600.1

Sequence Viewer

Length: 354 bp
ATGTGCAAAAAAATGCTGCAGAAAGAGCAAGGTATGGCTTTTACTCGTGCTGTAGCAGTAGGTTTTGATGTTGATCATTTGCCACCATTAATATCATTTGCTGAATGCTTTGGGGCTTCATGCTTGATGGATGCTCGTAGAAGATATAATGAACTGTGGAAACAAAAGCATGAGACTGGCCAGTGGCTTGAAATTGAAGCAGCTAAAGCAATGTCTAACCGAGCAGGCTTCTCTGCCATGAATGCATCGGGCATAGTGCTTTTAAATATGGCCACCAAGCCAAATGAGTTGGCAGAGAATAATGGAAAAGCTACTTATGCAGGTAAGACTTCAATTTCTAGGAGGGTGTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

12.94

Weight (kDa)

9.33

Isoelectric Point (pI)

55.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 311
AcoI YGGCCR 2 cut(s) 178, 270
AgsI TTSAA 3 cut(s) 191, 197, 333
AluBI AGCT 2 cut(s) 203, 311
AluI AGCT 2 cut(s) 203, 311
Alw26I GTCTC 1 cut(s) 167
AoxI GGCC 2 cut(s) 178, 270
ApeKI GCWGC 2 cut(s) 16, 200
AseI ATTAAT 1 cut(s) 89
BalI TGGCCA 2 cut(s) 180, 272
BauI CACGAG 1 cut(s) 45
BbvI GCAGC 2 cut(s) 3, 212
BccI CCATC 1 cut(s) 121
BclI TGATCA 1 cut(s) 73
BcoDI GTCTC 1 cut(s) 167
BfaI CTAG 2 cut(s) 339, 352
BfmI CTRYAG 2 cut(s) 17, 51
BfuAI ACCTGC 1 cut(s) 311
BisI GCNGC 2 cut(s) 17, 201
BlsI GCNGC 2 cut(s) 18, 202
BmsI GCATC 2 cut(s) 121, 254
BsaBI GATNNNNATC 1 cut(s) 72
Bse1I ACTGG 2 cut(s) 181, 181
Bse3DI GCAATG 1 cut(s) 216
Bse8I GATNNNNATC 1 cut(s) 72
BseGI GGATG 1 cut(s) 136
BseJI GATNNNNATC 1 cut(s) 72
BseMI GCAATG 1 cut(s) 216
BseNI ACTGG 2 cut(s) 181, 181
BseXI GCAGC 2 cut(s) 3, 212
BshFI GGCC 2 cut(s) 180, 272
BsmAI GTCTC 1 cut(s) 167
BsmI GAATGC 2 cut(s) 110, 247
BsnI GGCC 2 cut(s) 180, 272
Bsp143I GATC 1 cut(s) 73
BspANI GGCC 2 cut(s) 180, 272
BspMAI CTGCAG 1 cut(s) 21
BspMI ACCTGC 1 cut(s) 311
BsrDI GCAATG 1 cut(s) 216
BsrI ACTGG 2 cut(s) 181, 181
BssMI GATC 1 cut(s) 73
BssSI CACGAG 1 cut(s) 45
Bst2BI CACGAG 1 cut(s) 45
Bst4CI ACNGT 1 cut(s) 156
BstC8I GCNNGC 1 cut(s) 226
BstF5I GGATG 1 cut(s) 136
BstKTI GATC 1 cut(s) 76
BstMAI GTCTC 1 cut(s) 167
BstMBI GATC 1 cut(s) 73
BstMWI GCNNNNNNNGC 4 cut(s) 25, 206, 242, 317
BstSFI CTRYAG 2 cut(s) 17, 51
BstV1I GCAGC 2 cut(s) 3, 212
BsuRI GGCC 2 cut(s) 180, 272
BtsCI GGATG 1 cut(s) 136
BtsIMutI CAGTG 1 cut(s) 188
BveI ACCTGC 1 cut(s) 311
Cac8I GCNNGC 1 cut(s) 226
CviAII CATG 3 cut(s) 120, 170, 238
CviJI RGCY 9 cut(s) 38, 116, 180, 187, 203, 228, 272, 280, 311
CviKI_1 RGCY 9 cut(s) 38, 116, 180, 187, 203, 228, 272, 280, 311
DpnI GATC 1 cut(s) 75
DpnII GATC 1 cut(s) 73
DraI TTTAAA 1 cut(s) 264
EaeI YGGCCR 2 cut(s) 178, 270
EcoT22I ATGCAT 1 cut(s) 247
FaeI CATG 3 cut(s) 123, 173, 241
FaiI YATR 8 cut(s) 35, 121, 147, 171, 239, 254, 269, 318
FatI CATG 3 cut(s) 119, 169, 237
FbaI TGATCA 1 cut(s) 73
Fnu4HI GCNGC 2 cut(s) 17, 201
FokI GGATG 1 cut(s) 143
Fsp4HI GCNGC 2 cut(s) 17, 201
FspBI CTAG 2 cut(s) 339, 352
GluI GCNGC 2 cut(s) 17, 201
HaeIII GGCC 2 cut(s) 180, 272
Hin1II CATG 3 cut(s) 123, 173, 241
HpyCH4III ACNGT 1 cut(s) 156
HpyCH4V TGCA 4 cut(s) 6, 19, 245, 320
HpyF10VI GCNNNNNNNGC 4 cut(s) 25, 206, 242, 317
Hsp92II CATG 3 cut(s) 123, 173, 241
Ksp22I TGATCA 1 cut(s) 73
Kzo9I GATC 1 cut(s) 73
LpnPI CCDG 4 cut(s) 162, 194, 210, 306
Lsp1109I GCAGC 2 cut(s) 3, 212
LweI GCATC 2 cut(s) 121, 254
MaeI CTAG 2 cut(s) 339, 352
MalI GATC 1 cut(s) 75
MboI GATC 1 cut(s) 73
MboII GAAGA 1 cut(s) 153
MlsI TGGCCA 2 cut(s) 180, 272
MluCI AATT 2 cut(s) 192, 333
MluNI TGGCCA 2 cut(s) 180, 272
MnlI CCTC 1 cut(s) 336
Mox20I TGGCCA 2 cut(s) 180, 272
Mph1103I ATGCAT 1 cut(s) 247
MscI TGGCCA 2 cut(s) 180, 272
MseI TTAA 2 cut(s) 89, 263
Msp20I TGGCCA 2 cut(s) 180, 272
Mva1269I GAATGC 2 cut(s) 110, 247
MwoI GCNNNNNNNGC 4 cut(s) 25, 206, 242, 317
NdeII GATC 1 cut(s) 73
NlaIII CATG 3 cut(s) 123, 173, 241
NsiI ATGCAT 1 cut(s) 247
PctI GAATGC 2 cut(s) 110, 247
PkrI GCNGC 2 cut(s) 18, 202
PshBI ATTAAT 1 cut(s) 89
PstI CTGCAG 1 cut(s) 21
SaqAI TTAA 2 cut(s) 89, 263
SatI GCNGC 2 cut(s) 17, 201
Sau3AI GATC 1 cut(s) 73
SetI ASST 5 cut(s) 34, 64, 205, 313, 325
SfaNI GCATC 2 cut(s) 121, 254
SfcI CTRYAG 2 cut(s) 17, 51
Sse9I AATT 2 cut(s) 192, 333
SspMI CTAG 2 cut(s) 339, 352
TaaI ACNGT 1 cut(s) 156
TasI AATT 2 cut(s) 192, 333
Tru1I TTAA 2 cut(s) 89, 263
Tru9I TTAA 2 cut(s) 89, 263
TscAI CASTG 1 cut(s) 188
TseI GCWGC 2 cut(s) 16, 200
TspDTI ATGAA 3 cut(s) 108, 165, 254
TspRI CASTG 1 cut(s) 188
VspI ATTAAT 1 cut(s) 89
XspI CTAG 2 cut(s) 339, 352
Zsp2I ATGCAT 1 cut(s) 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.