Rroxscaffold_2G00091800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0016987
Physical Location & Seq
Reverse (-)
13336915 .. 13341084
4170 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00091800.1

Sequence Viewer

Length: 486 bp
ATGGACCCAAAAGCTGTGAAATTGGACCTGGCCCTTATCCTCGACTGTGTATCACTCGCCGCATCCGATCCCTCTCAAGGCCATCACCGACCTCAACCCCAGCGTCACCATCCTCTCCGTGGGCCCCACTCCGTCCACACAGACGGTTCCCCCAGCAAGGAGTGGTCGCTACCATCGAAATCCCCAAAAGGAGGTTCTATGGACTGGAGTACCACCCTGAGTGTTCAGCTTCTAAAAGTTATAGAGATGCGCAAAAAAATGCTGCAGAAAGAGCAAGGTATGGCTTTTACTCGTGCTGTAGCAGTAGGTTTTGATGTTGATCATTTGCCACCATTAATATCATTTGCTGAATGCTTTGGGGCTTCATGCTTGATGGATGCTTGTAGAAGATATAAGGAACTGTGGAAACGAAAGCATGAGACTGGCCAATGGCTTGAAATTGAAGCAGCTAAAGCATGTCTAACCGAGCAGACTTCTCTGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

161

Amino Acids

17.95

Weight (kDa)

8.62

Isoelectric Point (pI)

62.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 251
AciI CCGC 1 cut(s) 60
AclWI GGATC 1 cut(s) 62
AcoI YGGCCR 1 cut(s) 424
AfaI GTAC 1 cut(s) 211
AfiI CCNNNNNNNGG 4 cut(s) 77, 119, 157, 191
AgsI TTSAA 2 cut(s) 437, 443
AjnI CCWGG 1 cut(s) 27
AjuI GAANNNNNNNTTGG 2 cut(s) 178, 210
AluBI AGCT 3 cut(s) 14, 229, 449
AluI AGCT 3 cut(s) 14, 229, 449
Alw26I GTCTC 1 cut(s) 413
AlwI GGATC 1 cut(s) 62
AoxI GGCC 4 cut(s) 30, 79, 122, 424
ApaI GGGCCC 1 cut(s) 126
ApeKI GCWGC 2 cut(s) 262, 446
AseI ATTAAT 1 cut(s) 335
AspLEI GCGC 1 cut(s) 252
AspS9I GGNCC 5 cut(s) 4, 25, 31, 122, 123
AsuHPI GGTGA 2 cut(s) 77, 98
AvaII GGWCC 2 cut(s) 4, 25
BaeGI GKGCMC 1 cut(s) 126
BaeI ACNNNNGTAYC 2 cut(s) 193, 226
BalI TGGCCA 1 cut(s) 426
BanII GRGCYC 1 cut(s) 126
BauI CACGAG 1 cut(s) 291
BbvI GCAGC 2 cut(s) 249, 458
BccI CCATC 4 cut(s) 90, 117, 181, 367
BciT130I CCWGG 1 cut(s) 29
BclI TGATCA 1 cut(s) 319
BcoDI GTCTC 1 cut(s) 413
BfmI CTRYAG 2 cut(s) 263, 297
BisI GCNGC 3 cut(s) 60, 263, 447
BlsI GCNGC 3 cut(s) 61, 264, 448
Bme1390I CCNGG 1 cut(s) 29
Bme18I GGWCC 2 cut(s) 4, 25
BmgT120I GGNCC 5 cut(s) 4, 25, 31, 122, 123
BmiI GGNNCC 4 cut(s) 6, 124, 125, 148
BmrFI CCNGG 1 cut(s) 29
BmsI GCATC 3 cut(s) 71, 237, 367
BpmI CTGGAG 1 cut(s) 226
BpuEI CTTGAG 1 cut(s) 60
BsaBI GATNNNNATC 1 cut(s) 318
BsaJI CCNNGG 1 cut(s) 118
Bsc4I CCNNNNNNNGG 4 cut(s) 77, 119, 157, 191
Bse1I ACTGG 2 cut(s) 209, 427
Bse8I GATNNNNATC 1 cut(s) 318
BseBI CCWGG 1 cut(s) 29
BseDI CCNNGG 1 cut(s) 118
BseGI GGATG 3 cut(s) 62, 109, 382
BseJI GATNNNNATC 1 cut(s) 318
BseLI CCNNNNNNNGG 4 cut(s) 77, 119, 157, 191
BseMII CTCAG 1 cut(s) 209
BseNI ACTGG 2 cut(s) 209, 427
BseSI GKGCMC 1 cut(s) 126
BseXI GCAGC 2 cut(s) 249, 458
BseYI CCCAGC 2 cut(s) 99, 152
BshFI GGCC 4 cut(s) 32, 81, 124, 426
BslI CCNNNNNNNGG 4 cut(s) 77, 119, 157, 191
BsmAI GTCTC 1 cut(s) 413
BsmI GAATGC 1 cut(s) 356
BsnI GGCC 4 cut(s) 32, 81, 124, 426
Bsp120I GGGCCC 1 cut(s) 122
Bsp1286I GDGCHC 1 cut(s) 126
Bsp143I GATC 2 cut(s) 67, 319
BspACI CCGC 1 cut(s) 60
BspANI GGCC 4 cut(s) 32, 81, 124, 426
BspCNI CTCAG 1 cut(s) 210
BspLI GGNNCC 4 cut(s) 6, 124, 125, 148
BspMAI CTGCAG 1 cut(s) 267
BspPI GGATC 1 cut(s) 62
BsrI ACTGG 2 cut(s) 209, 427
BssECI CCNNGG 1 cut(s) 118
BssMI GATC 2 cut(s) 67, 319
BssSI CACGAG 1 cut(s) 291
Bst2BI CACGAG 1 cut(s) 291
Bst2UI CCWGG 1 cut(s) 29
Bst4CI ACNGT 3 cut(s) 47, 146, 402
BstDEI CTNAG 1 cut(s) 218
BstDSI CCRYGG 1 cut(s) 118
BstF5I GGATG 3 cut(s) 62, 109, 382
BstHHI GCGC 1 cut(s) 252
BstKTI GATC 2 cut(s) 70, 322
BstMAI GTCTC 1 cut(s) 413
BstMBI GATC 2 cut(s) 67, 319
BstMWI GCNNNNNNNGC 2 cut(s) 271, 452
BstNI CCWGG 1 cut(s) 29
BstNSI RCATGY 1 cut(s) 459
BstSCI CCNGG 1 cut(s) 27
BstSFI CTRYAG 2 cut(s) 263, 297
BstSLI GKGCMC 1 cut(s) 126
BstV1I GCAGC 2 cut(s) 249, 458
BsuRI GGCC 4 cut(s) 32, 81, 124, 426
BtgI CCRYGG 1 cut(s) 118
BtsCI GGATG 3 cut(s) 62, 109, 382
CfoI GCGC 1 cut(s) 252
Cfr13I GGNCC 5 cut(s) 4, 25, 31, 122, 123
CseI GACGC 1 cut(s) 92
Csp6I GTAC 1 cut(s) 210
CviAII CATG 4 cut(s) 366, 416, 456, 483
CviQI GTAC 1 cut(s) 210
DdeI CTNAG 1 cut(s) 218
DpnI GATC 2 cut(s) 69, 321
DpnII GATC 2 cut(s) 67, 319
EaeI YGGCCR 1 cut(s) 424
Eco24I GRGCYC 1 cut(s) 126
Eco47I GGWCC 2 cut(s) 4, 25
EcoO109I RGGNCCY 1 cut(s) 123
EcoRII CCWGG 1 cut(s) 27
EcoT38I GRGCYC 1 cut(s) 126
FaeI CATG 4 cut(s) 369, 419, 459, 486
FaiI YATR 8 cut(s) 200, 242, 281, 367, 393, 417, 457, 484
FatI CATG 4 cut(s) 365, 415, 455, 482
FbaI TGATCA 1 cut(s) 319
Fnu4HI GCNGC 3 cut(s) 60, 263, 447
FokI GGATG 3 cut(s) 49, 96, 389
FriOI GRGCYC 1 cut(s) 126
Fsp4HI GCNGC 3 cut(s) 60, 263, 447
FspI TGCGCA 1 cut(s) 251
GlaI GCGC 1 cut(s) 251
GluI GCNGC 3 cut(s) 60, 263, 447
GsaI CCCAGC 2 cut(s) 103, 156
GsuI CTGGAG 1 cut(s) 226
HaeIII GGCC 4 cut(s) 32, 81, 124, 426
HgaI GACGC 1 cut(s) 92
HhaI GCGC 1 cut(s) 252
Hin1II CATG 4 cut(s) 369, 419, 459, 486
Hin6I GCGC 1 cut(s) 250
HinP1I GCGC 1 cut(s) 250
HphI GGTGA 2 cut(s) 77, 98
Hpy166II GTNNAC 1 cut(s) 136
Hpy188I TCNGA 1 cut(s) 67
Hpy8I GTNNAC 1 cut(s) 136
HpyCH4III ACNGT 3 cut(s) 47, 146, 402
HpyCH4V TGCA 1 cut(s) 265
HpyF10VI GCNNNNNNNGC 2 cut(s) 271, 452
HpyF3I CTNAG 1 cut(s) 218
Hsp92II CATG 4 cut(s) 369, 419, 459, 486
HspAI GCGC 1 cut(s) 250
Ksp22I TGATCA 1 cut(s) 319
Kzo9I GATC 2 cut(s) 67, 319
LpnPI CCDG 7 cut(s) 14, 41, 113, 166, 190, 230, 408
Lsp1109I GCAGC 2 cut(s) 249, 458
LweI GCATC 3 cut(s) 71, 237, 367
MaeIII GTNAC 1 cut(s) 104
MalI GATC 2 cut(s) 69, 321
MboI GATC 2 cut(s) 67, 319
MboII GAAGA 1 cut(s) 399
MhlI GDGCHC 1 cut(s) 126
MlsI TGGCCA 1 cut(s) 426
MluCI AATT 2 cut(s) 20, 438
MluNI TGGCCA 1 cut(s) 426
MnlI CCTC 5 cut(s) 50, 82, 102, 123, 185
Mox20I TGGCCA 1 cut(s) 426
MscI TGGCCA 1 cut(s) 426
MseI TTAA 1 cut(s) 335
Msp20I TGGCCA 1 cut(s) 426
MspR9I CCNGG 1 cut(s) 29
Mva1269I GAATGC 1 cut(s) 356
MvaI CCWGG 1 cut(s) 29
MwoI GCNNNNNNNGC 2 cut(s) 271, 452
NdeII GATC 2 cut(s) 67, 319
NlaIII CATG 4 cut(s) 369, 419, 459, 486
NlaIV GGNNCC 4 cut(s) 6, 124, 125, 148
NmuCI GTSAC 1 cut(s) 104
NsbI TGCGCA 1 cut(s) 251
NspI RCATGY 1 cut(s) 459
PcsI WCGNNNNNNNCGW 2 cut(s) 63, 173
PctI GAATGC 1 cut(s) 356
PkrI GCNGC 3 cut(s) 61, 264, 448
PshBI ATTAAT 1 cut(s) 335
Psp6I CCWGG 1 cut(s) 27
PspFI CCCAGC 2 cut(s) 99, 152
PspGI CCWGG 1 cut(s) 27
PspN4I GGNNCC 4 cut(s) 6, 124, 125, 148
PspOMI GGGCCC 1 cut(s) 122
PspPI GGNCC 5 cut(s) 4, 25, 31, 122, 123
PstI CTGCAG 1 cut(s) 267
RsaI GTAC 1 cut(s) 211
RsaNI GTAC 1 cut(s) 210
SaqAI TTAA 1 cut(s) 335
SatI GCNGC 3 cut(s) 60, 263, 447
Sau3AI GATC 2 cut(s) 67, 319
Sau96I GGNCC 5 cut(s) 4, 25, 31, 122, 123
ScrFI CCNGG 1 cut(s) 29
SduI GDGCHC 1 cut(s) 126
SetI ASST 8 cut(s) 16, 30, 94, 196, 231, 280, 310, 451
SfaNI GCATC 3 cut(s) 71, 237, 367
SfcI CTRYAG 2 cut(s) 263, 297
SinI GGWCC 2 cut(s) 4, 25
SmlI CTYRAG 1 cut(s) 75
SmoI CTYRAG 1 cut(s) 75
Sse9I AATT 2 cut(s) 20, 438
SsiI CCGC 1 cut(s) 60
StyD4I CCNGG 1 cut(s) 27
TaaI ACNGT 3 cut(s) 47, 146, 402
TaqI TCGA 2 cut(s) 42, 176
TasI AATT 2 cut(s) 20, 438
TauI GCSGC 1 cut(s) 62
Tru1I TTAA 1 cut(s) 335
Tru9I TTAA 1 cut(s) 335
TseFI GTSAC 1 cut(s) 104
TseI GCWGC 2 cut(s) 262, 446
Tsp45I GTSAC 1 cut(s) 104
TspDTI ATGAA 1 cut(s) 354
TspGWI ACGGA 2 cut(s) 107, 121
VpaK11BI GGWCC 2 cut(s) 4, 25
VspI ATTAAT 1 cut(s) 335
XceI RCATGY 1 cut(s) 459
XcmI CCANNNNNNNNNTGG 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.