Rmu_sc0003413.1_g000048

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003413.1
OG0016987
Physical Location & Seq
Forward (+)
205029 .. 207736
2708 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003413.1_g000048.1.cds

Sequence Viewer

Length: 972 bp
atggacccaaaagccgtgaaattggacctggtccttatcctcgattgtggctcccaatacacccaccttatcactcgccgcatccgatccctctccgtcttctacctcacaatctccggtatcagccccctcaaggccatcacggacctcaaccccagcgtcaccatcctttccgtgggccccacttcgtccacacagacggctcccccagtttccctctcgggttcgcggagtggactgagggtggttactgttggggagaagcaggagtatggcaagatggagattgtggtggagagcaattcggggattttcgggtccaagagggttggggataggcaggtggtctggatgagccatgggattaggtcgccaagctaccccaggggttccaggagatggcgcagagccagcaaggagtggtcgctaccatcgaaatccccaaaaggaggttctatgggctggagtaccaccctaaagtattatttcatttatggatctacgaaggccccatggcgactttcgatggtagctaatcttcacttaacgaagcaaagttttcaattttcaggaatcatacaaccagatgttcagcttctaaaagttctagagatgcgcaaaaaaatgctgcagaaagagcaaggtatggcttttactcgtgctgtagcggtaggttttgatgttgatcatttgccaccattaatatcatttgctgaatgctttggggcttcatgcttgatggatgcttgtagaagatataaggaactgtggaaacgaaagcatgagactggccaatggcttgaaattgaagcagctaaagcaatgtctaaccgagcagacttctctgccatgaatgcatcgggcatagtgcttttaaatatgaccaccaagccaaatgagttggcagagaataatggaaaagctacttatgcaggtaagacttcaatttctaggagggtgtcctacaaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

323

Amino Acids

35.94

Weight (kDa)

10.01

Isoelectric Point (pI)

53.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 331
Acc16I TGCGCA 1 cut(s) 617
Acc36I ACCTGC 2 cut(s) 331, 923
AccB7I CCANNNNNTGG 1 cut(s) 399
AccII CGCG 1 cut(s) 229
AciI CCGC 3 cut(s) 79, 229, 668
AclWI GGATC 2 cut(s) 81, 505
AcoI YGGCCR 1 cut(s) 790
AfaI GTAC 1 cut(s) 469
AfiI CCNNNNNNNGG 4 cut(s) 133, 175, 399, 449
AgsI TTSAA 4 cut(s) 563, 803, 809, 945
AjnI CCWGG 3 cut(s) 27, 383, 392
AjuI GAANNNNNNNTTGG 2 cut(s) 436, 468
AluBI AGCT 5 cut(s) 378, 533, 595, 815, 923
AluI AGCT 5 cut(s) 378, 533, 595, 815, 923
Alw26I GTCTC 1 cut(s) 779
AlwI GGATC 2 cut(s) 81, 505
Ama87I CYCGRG 1 cut(s) 220
AoxI GGCC 4 cut(s) 135, 178, 507, 790
ApaI GGGCCC 1 cut(s) 182
ApeKI GCWGC 2 cut(s) 628, 812
AseI ATTAAT 1 cut(s) 701
AspLEI GCGC 2 cut(s) 405, 618
AspS9I GGNCC 8 cut(s) 4, 25, 31, 145, 178, 179, 318, 508
AsuHPI GGTGA 1 cut(s) 154
AvaI CYCGRG 1 cut(s) 220
AvaII GGWCC 5 cut(s) 4, 25, 31, 145, 318
BaeGI GKGCMC 1 cut(s) 182
BalI TGGCCA 1 cut(s) 792
BanII GRGCYC 1 cut(s) 182
BarI GAAGNNNNNNTAC 2 cut(s) 522, 554
BauI CACGAG 1 cut(s) 657
BbsI GAAGAC 1 cut(s) 91
BbvI GCAGC 2 cut(s) 615, 824
BccI CCATC 7 cut(s) 146, 173, 274, 393, 439, 520, 733
BceAI ACGGC 1 cut(s) 216
BciT130I CCWGG 3 cut(s) 29, 385, 394
BclI TGATCA 1 cut(s) 685
BcoDI GTCTC 1 cut(s) 779
BfaI CTAG 2 cut(s) 608, 951
BfmI CTRYAG 2 cut(s) 629, 663
BfuAI ACCTGC 2 cut(s) 331, 923
BisI GCNGC 3 cut(s) 79, 629, 813
BlsI GCNGC 3 cut(s) 80, 630, 814
Bme1390I CCNGG 3 cut(s) 29, 385, 394
Bme18I GGWCC 5 cut(s) 4, 25, 31, 145, 318
BmeT110I CYCGRG 1 cut(s) 220
BmgT120I GGNCC 8 cut(s) 4, 25, 31, 145, 178, 179, 318, 508
BmiI GGNNCC 8 cut(s) 6, 52, 180, 181, 204, 319, 391, 510
BmrFI CCNGG 3 cut(s) 29, 385, 394
BmrI ACTGGG 1 cut(s) 203
BmsI GCATC 4 cut(s) 90, 603, 733, 866
BmuI ACTGGG 1 cut(s) 203
BpiI GAAGAC 1 cut(s) 91
BpmI CTGGAG 1 cut(s) 484
BpuEI CTTGAG 1 cut(s) 116
BsaBI GATNNNNATC 1 cut(s) 684
BsaJI CCNNGG 5 cut(s) 174, 358, 383, 384, 512
BsaWI WCCGGW 1 cut(s) 116
Bsc4I CCNNNNNNNGG 4 cut(s) 133, 175, 399, 449
Bse1I ACTGG 2 cut(s) 209, 793
Bse3DI GCAATG 1 cut(s) 828
Bse8I GATNNNNATC 1 cut(s) 684
BseBI CCWGG 3 cut(s) 29, 385, 394
BseDI CCNNGG 5 cut(s) 174, 358, 383, 384, 512
BseGI GGATG 4 cut(s) 81, 165, 357, 748
BseJI GATNNNNATC 1 cut(s) 684
BseLI CCNNNNNNNGG 4 cut(s) 133, 175, 399, 449
BseMI GCAATG 1 cut(s) 828
BseMII CTCAG 1 cut(s) 230
BseNI ACTGG 2 cut(s) 209, 793
BseSI GKGCMC 1 cut(s) 182
BseXI GCAGC 2 cut(s) 615, 824
BseYI CCCAGC 1 cut(s) 155
Bsh1236I CGCG 1 cut(s) 229
BshFI GGCC 4 cut(s) 137, 180, 509, 792
BsiHKCI CYCGRG 1 cut(s) 220
BsiSI CCGG 1 cut(s) 117
BslI CCNNNNNNNGG 4 cut(s) 133, 175, 399, 449
BsmAI GTCTC 1 cut(s) 779
BsmI GAATGC 2 cut(s) 722, 859
BsnI GGCC 4 cut(s) 137, 180, 509, 792
BsoBI CYCGRG 1 cut(s) 220
Bsp120I GGGCCC 1 cut(s) 178
Bsp1286I GDGCHC 1 cut(s) 182
Bsp143I GATC 3 cut(s) 86, 497, 685
Bsp19I CCATGG 2 cut(s) 358, 512
BspACI CCGC 3 cut(s) 79, 229, 668
BspANI GGCC 4 cut(s) 137, 180, 509, 792
BspCNI CTCAG 1 cut(s) 231
BspFNI CGCG 1 cut(s) 229
BspLI GGNNCC 8 cut(s) 6, 52, 180, 181, 204, 319, 391, 510
BspMAI CTGCAG 1 cut(s) 633
BspMI ACCTGC 2 cut(s) 331, 923
BspPI GGATC 2 cut(s) 81, 505
BsrDI GCAATG 1 cut(s) 828
BsrI ACTGG 2 cut(s) 209, 793
BssECI CCNNGG 5 cut(s) 174, 358, 383, 384, 512
BssMI GATC 3 cut(s) 86, 497, 685
BssSI CACGAG 1 cut(s) 657
BssT1I CCWWGG 2 cut(s) 358, 512
Bst2BI CACGAG 1 cut(s) 657
Bst2UI CCWGG 3 cut(s) 29, 385, 394
Bst4CI ACNGT 2 cut(s) 253, 768
BstC8I GCNNGC 1 cut(s) 412
BstDEI CTNAG 1 cut(s) 239
BstDSI CCRYGG 3 cut(s) 174, 358, 512
BstF5I GGATG 4 cut(s) 81, 165, 357, 748
BstFNI CGCG 1 cut(s) 229
BstHHI GCGC 2 cut(s) 405, 618
BstKTI GATC 3 cut(s) 89, 500, 688
BstMAI GTCTC 1 cut(s) 779
BstMBI GATC 3 cut(s) 86, 497, 685
BstMWI GCNNNNNNNGC 5 cut(s) 411, 637, 818, 854, 929
BstNI CCWGG 3 cut(s) 29, 385, 394
BstSCI CCNGG 3 cut(s) 27, 383, 392
BstSFI CTRYAG 2 cut(s) 629, 663
BstSLI GKGCMC 1 cut(s) 182
BstUI CGCG 1 cut(s) 229
BstV1I GCAGC 2 cut(s) 615, 824
BstV2I GAAGAC 1 cut(s) 91
BstX2I RGATCY 1 cut(s) 497
BstYI RGATCY 1 cut(s) 497
BsuRI GGCC 4 cut(s) 137, 180, 509, 792
BtgI CCRYGG 3 cut(s) 174, 358, 512
BtsCI GGATG 4 cut(s) 81, 165, 357, 748
BveI ACCTGC 2 cut(s) 331, 923
Cac8I GCNNGC 1 cut(s) 412
CfoI GCGC 2 cut(s) 405, 618
Cfr13I GGNCC 8 cut(s) 4, 25, 31, 145, 178, 179, 318, 508
CseI GACGC 1 cut(s) 148
CsiI ACCWGGT 1 cut(s) 27
Csp6I GTAC 1 cut(s) 468
CviAII CATG 5 cut(s) 359, 513, 732, 782, 850
CviQI GTAC 1 cut(s) 468
DdeI CTNAG 1 cut(s) 239
DpnI GATC 3 cut(s) 88, 499, 687
DpnII GATC 3 cut(s) 86, 497, 685
DraI TTTAAA 1 cut(s) 876
EaeI YGGCCR 1 cut(s) 790
Eco130I CCWWGG 2 cut(s) 358, 512
Eco24I GRGCYC 1 cut(s) 182
Eco47I GGWCC 5 cut(s) 4, 25, 31, 145, 318
Eco88I CYCGRG 1 cut(s) 220
EcoO109I RGGNCCY 2 cut(s) 179, 508
EcoRII CCWGG 3 cut(s) 27, 383, 392
EcoT14I CCWWGG 2 cut(s) 358, 512
EcoT22I ATGCAT 1 cut(s) 859
EcoT38I GRGCYC 1 cut(s) 182
ErhI CCWWGG 2 cut(s) 358, 512
FaeI CATG 5 cut(s) 362, 516, 735, 785, 853
FatI CATG 5 cut(s) 358, 512, 731, 781, 849
FbaI TGATCA 1 cut(s) 685
Fnu4HI GCNGC 3 cut(s) 79, 629, 813
FokI GGATG 4 cut(s) 68, 152, 364, 755
FriOI GRGCYC 1 cut(s) 182
Fsp4HI GCNGC 3 cut(s) 79, 629, 813
FspBI CTAG 2 cut(s) 608, 951
FspI TGCGCA 1 cut(s) 617
GlaI GCGC 2 cut(s) 404, 617
GluI GCNGC 3 cut(s) 79, 629, 813
GsaI CCCAGC 1 cut(s) 159
GsuI CTGGAG 1 cut(s) 484
HaeIII GGCC 4 cut(s) 137, 180, 509, 792
HapII CCGG 1 cut(s) 117
HgaI GACGC 1 cut(s) 148
HhaI GCGC 2 cut(s) 405, 618
Hin1II CATG 5 cut(s) 362, 516, 735, 785, 853
Hin6I GCGC 2 cut(s) 403, 616
HinP1I GCGC 2 cut(s) 403, 616
HinfI GANTC 1 cut(s) 573
HpaII CCGG 1 cut(s) 117
HphI GGTGA 1 cut(s) 154
Hpy166II GTNNAC 2 cut(s) 192, 236
Hpy188I TCNGA 1 cut(s) 86
Hpy188III TCNNGA 3 cut(s) 349, 570, 608
Hpy8I GTNNAC 2 cut(s) 192, 236
HpyAV CCTTC 1 cut(s) 499
HpyCH4III ACNGT 2 cut(s) 253, 768
HpyCH4V TGCA 3 cut(s) 631, 857, 932
HpyF10VI GCNNNNNNNGC 5 cut(s) 411, 637, 818, 854, 929
HpyF3I CTNAG 1 cut(s) 239
Hsp92II CATG 5 cut(s) 362, 516, 735, 785, 853
HspAI GCGC 2 cut(s) 403, 616
Ksp22I TGATCA 1 cut(s) 685
Kzo9I GATC 3 cut(s) 86, 497, 685
LmnI GCTCC 2 cut(s) 56, 208
Lsp1109I GCAGC 2 cut(s) 615, 824
LweI GCATC 4 cut(s) 90, 603, 733, 866
MabI ACCWGGT 1 cut(s) 27
MaeI CTAG 2 cut(s) 608, 951
MaeIII GTNAC 2 cut(s) 160, 247
MalI GATC 3 cut(s) 88, 499, 687
MboI GATC 3 cut(s) 86, 497, 685
MboII GAAGA 3 cut(s) 91, 530, 765
MflI RGATCY 1 cut(s) 497
MhlI GDGCHC 1 cut(s) 182
MlsI TGGCCA 1 cut(s) 792
MluCI AATT 5 cut(s) 20, 301, 563, 804, 945
MluNI TGGCCA 1 cut(s) 792
Mox20I TGGCCA 1 cut(s) 792
Mph1103I ATGCAT 1 cut(s) 859
MscI TGGCCA 1 cut(s) 792
MseI TTAA 3 cut(s) 545, 701, 875
Msp20I TGGCCA 1 cut(s) 792
MspI CCGG 1 cut(s) 117
MspR9I CCNGG 3 cut(s) 29, 385, 394
Mva1269I GAATGC 2 cut(s) 722, 859
MvaI CCWGG 3 cut(s) 29, 385, 394
MvnI CGCG 1 cut(s) 229
MwoI GCNNNNNNNGC 5 cut(s) 411, 637, 818, 854, 929
NcoI CCATGG 2 cut(s) 358, 512
NdeII GATC 3 cut(s) 86, 497, 685
NlaIII CATG 5 cut(s) 362, 516, 735, 785, 853
NlaIV GGNNCC 8 cut(s) 6, 52, 180, 181, 204, 319, 391, 510
NmuCI GTSAC 1 cut(s) 160
NsbI TGCGCA 1 cut(s) 617
NsiI ATGCAT 1 cut(s) 859
PaqCI CACCTGC 1 cut(s) 331
PasI CCCWGGG 1 cut(s) 384
PcsI WCGNNNNNNNCGW 2 cut(s) 82, 431
PctI GAATGC 2 cut(s) 722, 859
PfeI GAWTC 1 cut(s) 573
PflFI GACNNNGTC 1 cut(s) 29
PflMI CCANNNNNTGG 1 cut(s) 399
PfoI TCCNGGA 1 cut(s) 392
PkrI GCNGC 3 cut(s) 80, 630, 814
PshBI ATTAAT 1 cut(s) 701
Psp6I CCWGG 3 cut(s) 27, 383, 392
PspFI CCCAGC 1 cut(s) 155
PspGI CCWGG 3 cut(s) 27, 383, 392
PspN4I GGNNCC 8 cut(s) 6, 52, 180, 181, 204, 319, 391, 510
PspOMI GGGCCC 1 cut(s) 178
PspPI GGNCC 8 cut(s) 4, 25, 31, 145, 178, 179, 318, 508
PstI CTGCAG 1 cut(s) 633
PsuI RGATCY 1 cut(s) 497
PsyI GACNNNGTC 1 cut(s) 29
RsaI GTAC 1 cut(s) 469
RsaNI GTAC 1 cut(s) 468
SaqAI TTAA 3 cut(s) 545, 701, 875
SatI GCNGC 3 cut(s) 79, 629, 813
Sau3AI GATC 3 cut(s) 86, 497, 685
Sau96I GGNCC 8 cut(s) 4, 25, 31, 145, 178, 179, 318, 508
ScrFI CCNGG 3 cut(s) 29, 385, 394
SduI GDGCHC 1 cut(s) 182
SexAI ACCWGGT 1 cut(s) 27
SfaNI GCATC 4 cut(s) 90, 603, 733, 866
SfcI CTRYAG 2 cut(s) 629, 663
SinI GGWCC 5 cut(s) 4, 25, 31, 145, 318
SmlI CTYRAG 1 cut(s) 131
SmoI CTYRAG 1 cut(s) 131
Sse9I AATT 5 cut(s) 20, 301, 563, 804, 945
SsiI CCGC 3 cut(s) 79, 229, 668
SspMI CTAG 2 cut(s) 608, 951
StyD4I CCNGG 3 cut(s) 27, 383, 392
StyI CCWWGG 2 cut(s) 358, 512
TaaI ACNGT 2 cut(s) 253, 768
TaqI TCGA 3 cut(s) 42, 434, 524
TasI AATT 5 cut(s) 20, 301, 563, 804, 945
TauI GCSGC 1 cut(s) 81
TfiI GAWTC 1 cut(s) 573
Tru1I TTAA 3 cut(s) 545, 701, 875
Tru9I TTAA 3 cut(s) 545, 701, 875
TseFI GTSAC 1 cut(s) 160
TseI GCWGC 2 cut(s) 628, 812
Tsp45I GTSAC 1 cut(s) 160
TspDTI ATGAA 3 cut(s) 478, 720, 866
TspGWI ACGGA 3 cut(s) 85, 158, 163
Tth111I GACNNNGTC 1 cut(s) 29
Van91I CCANNNNNTGG 1 cut(s) 399
VpaK11BI GGWCC 5 cut(s) 4, 25, 31, 145, 318
VspI ATTAAT 1 cut(s) 701
XbaI TCTAGA 1 cut(s) 607
XcmI CCANNNNNNNNNTGG 1 cut(s) 172
XspI CTAG 2 cut(s) 608, 951
Zsp2I ATGCAT 1 cut(s) 859
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.