Rmu_ssc0000091.1_g000005

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000091.1
OG0016987
Physical Location & Seq
Reverse (-)
22295 .. 24683
2389 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000091.1_g000005.1.cds

Sequence Viewer

Length: 477 bp
atggtaatattcggagtgggccgcgtcttcttcctcggaatatgctacgggctgcagttgattttggcagggtggttactgttggggagaagcaggagtatggcaagatggagagcaatttggggattttgcgggtccaagagggttggggataggcaggtggtctggatgagccatgggattaggtcatcaagctaccccgggagatggcgcagagccagcaaggagtggtcgctaccatcgaaatccccaaaaggagattttagtatggatctacgaaggccccatggatggaatcatacaacccgatgttcagcttctaaaagttctagagatgcgcaaaaaaatgctgcagaaagagcaagggatgcttgtagaagatataaggaactgtggaaacgaaagcatgagactggccaatggcttgaaattgaaaaagctaaagcatgtctaaccgagcagacttctccgccatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

158

Amino Acids

18.24

Weight (kDa)

10.77

Isoelectric Point (pI)

78.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 148
Acc16I TGCGCA 1 cut(s) 339
Acc36I ACCTGC 1 cut(s) 148
AccII CGCG 1 cut(s) 24
AciI CCGC 3 cut(s) 22, 132, 470
AclWI GGATC 1 cut(s) 279
AcoI YGGCCR 1 cut(s) 415
AfiI CCNNNNNNNGG 2 cut(s) 207, 291
AgsI TTSAA 2 cut(s) 428, 434
AluBI AGCT 3 cut(s) 195, 317, 440
AluI AGCT 3 cut(s) 195, 317, 440
Alw26I GTCTC 1 cut(s) 404
AlwI GGATC 1 cut(s) 279
Ama87I CYCGRG 1 cut(s) 200
AoxI GGCC 3 cut(s) 19, 281, 415
ApeKI GCWGC 2 cut(s) 52, 350
AspLEI GCGC 2 cut(s) 213, 340
AspS9I GGNCC 3 cut(s) 19, 135, 282
AsuC2I CCSGG 2 cut(s) 201, 202
AvaI CYCGRG 1 cut(s) 200
AvaII GGWCC 1 cut(s) 135
BalI TGGCCA 1 cut(s) 417
BbsI GAAGAC 1 cut(s) 19
BbvI GCAGC 2 cut(s) 39, 337
BccI CCATC 4 cut(s) 102, 201, 247, 285
BcnI CCSGG 2 cut(s) 201, 202
BcoDI GTCTC 1 cut(s) 404
BfaI CTAG 1 cut(s) 330
BfmI CTRYAG 2 cut(s) 53, 351
BfuAI ACCTGC 1 cut(s) 148
BisI GCNGC 3 cut(s) 22, 53, 351
BlsI GCNGC 3 cut(s) 23, 54, 352
Bme1390I CCNGG 2 cut(s) 201, 202
Bme18I GGWCC 1 cut(s) 135
BmeT110I CYCGRG 1 cut(s) 200
BmgT120I GGNCC 3 cut(s) 19, 135, 282
BmiI GGNNCC 2 cut(s) 136, 284
BmrFI CCNGG 2 cut(s) 201, 202
BmsI GCATC 2 cut(s) 325, 358
BpiI GAAGAC 1 cut(s) 19
BpuMI CCSGG 2 cut(s) 201, 202
BsaJI CCNNGG 5 cut(s) 34, 175, 199, 200, 286
Bsc4I CCNNNNNNNGG 2 cut(s) 207, 291
Bse1I ACTGG 1 cut(s) 418
BseDI CCNNGG 5 cut(s) 34, 175, 199, 200, 286
BseGI GGATG 3 cut(s) 174, 296, 373
BseLI CCNNNNNNNGG 2 cut(s) 207, 291
BseNI ACTGG 1 cut(s) 418
BseXI GCAGC 2 cut(s) 39, 337
Bsh1236I CGCG 1 cut(s) 24
BshFI GGCC 3 cut(s) 21, 283, 417
BsiHKCI CYCGRG 1 cut(s) 200
BsiSI CCGG 1 cut(s) 201
BslI CCNNNNNNNGG 2 cut(s) 207, 291
BsmAI GTCTC 1 cut(s) 404
BsnI GGCC 3 cut(s) 21, 283, 417
BsoBI CYCGRG 1 cut(s) 200
Bsp143I GATC 1 cut(s) 271
Bsp19I CCATGG 2 cut(s) 175, 286
BspACI CCGC 3 cut(s) 22, 132, 470
BspANI GGCC 3 cut(s) 21, 283, 417
BspFNI CGCG 1 cut(s) 24
BspLI GGNNCC 2 cut(s) 136, 284
BspMAI CTGCAG 2 cut(s) 57, 355
BspMI ACCTGC 1 cut(s) 148
BspPI GGATC 1 cut(s) 279
BsrI ACTGG 1 cut(s) 418
BssECI CCNNGG 5 cut(s) 34, 175, 199, 200, 286
BssMI GATC 1 cut(s) 271
BssT1I CCWWGG 2 cut(s) 175, 286
Bst4CI ACNGT 2 cut(s) 81, 393
BstAPI GCANNNNNTGC 1 cut(s) 368
BstC8I GCNNGC 1 cut(s) 220
BstDSI CCRYGG 2 cut(s) 175, 286
BstF5I GGATG 3 cut(s) 174, 296, 373
BstFNI CGCG 1 cut(s) 24
BstHHI GCGC 2 cut(s) 213, 340
BstKTI GATC 1 cut(s) 274
BstMAI GTCTC 1 cut(s) 404
BstMBI GATC 1 cut(s) 271
BstMWI GCNNNNNNNGC 3 cut(s) 219, 359, 368
BstNSI RCATGY 1 cut(s) 450
BstSCI CCNGG 2 cut(s) 199, 200
BstSFI CTRYAG 2 cut(s) 53, 351
BstUI CGCG 1 cut(s) 24
BstV1I GCAGC 2 cut(s) 39, 337
BstV2I GAAGAC 1 cut(s) 19
BstX2I RGATCY 1 cut(s) 271
BstYI RGATCY 1 cut(s) 271
BsuRI GGCC 3 cut(s) 21, 283, 417
BtgI CCRYGG 2 cut(s) 175, 286
BtsCI GGATG 3 cut(s) 174, 296, 373
BveI ACCTGC 1 cut(s) 148
Cac8I GCNNGC 1 cut(s) 220
CfoI GCGC 2 cut(s) 213, 340
Cfr13I GGNCC 3 cut(s) 19, 135, 282
Cfr9I CCCGGG 1 cut(s) 200
CseI GACGC 1 cut(s) 13
CviAII CATG 5 cut(s) 176, 287, 407, 447, 474
DpnI GATC 1 cut(s) 273
DpnII GATC 1 cut(s) 271
EaeI YGGCCR 1 cut(s) 415
EciI GGCGGA 1 cut(s) 459
Eco130I CCWWGG 2 cut(s) 175, 286
Eco47I GGWCC 1 cut(s) 135
Eco88I CYCGRG 1 cut(s) 200
EcoO109I RGGNCCY 1 cut(s) 282
EcoT14I CCWWGG 2 cut(s) 175, 286
ErhI CCWWGG 2 cut(s) 175, 286
FaeI CATG 5 cut(s) 179, 290, 410, 450, 477
FalI AAGNNNNNCTT 2 cut(s) 355, 387
FatI CATG 5 cut(s) 175, 286, 406, 446, 473
FauI CCCGC 1 cut(s) 125
Fnu4HI GCNGC 3 cut(s) 22, 53, 351
FokI GGATG 3 cut(s) 181, 303, 380
Fsp4HI GCNGC 3 cut(s) 22, 53, 351
FspBI CTAG 1 cut(s) 330
FspI TGCGCA 1 cut(s) 339
GlaI GCGC 2 cut(s) 212, 339
GluI GCNGC 3 cut(s) 22, 53, 351
HaeIII GGCC 3 cut(s) 21, 283, 417
HapII CCGG 1 cut(s) 201
HgaI GACGC 1 cut(s) 13
HhaI GCGC 2 cut(s) 213, 340
Hin1II CATG 5 cut(s) 179, 290, 410, 450, 477
Hin6I GCGC 2 cut(s) 211, 338
HinP1I GCGC 2 cut(s) 211, 338
HinfI GANTC 1 cut(s) 295
HpaII CCGG 1 cut(s) 201
Hpy188I TCNGA 2 cut(s) 14, 38
Hpy188III TCNNGA 2 cut(s) 166, 330
HpyAV CCTTC 1 cut(s) 273
HpyCH4III ACNGT 2 cut(s) 81, 393
HpyCH4V TGCA 2 cut(s) 55, 353
HpyF10VI GCNNNNNNNGC 3 cut(s) 219, 359, 368
Hsp92II CATG 5 cut(s) 179, 290, 410, 450, 477
HspAI GCGC 2 cut(s) 211, 338
Kzo9I GATC 1 cut(s) 271
LpnPI CCDG 7 cut(s) 54, 79, 143, 151, 214, 232, 399
Lsp1109I GCAGC 2 cut(s) 39, 337
LweI GCATC 2 cut(s) 325, 358
MaeI CTAG 1 cut(s) 330
MaeIII GTNAC 1 cut(s) 75
MalI GATC 1 cut(s) 273
MboI GATC 1 cut(s) 271
MboII GAAGA 3 cut(s) 19, 22, 390
MflI RGATCY 1 cut(s) 271
MlsI TGGCCA 1 cut(s) 417
MluCI AATT 2 cut(s) 117, 429
MluNI TGGCCA 1 cut(s) 417
MnlI CCTC 2 cut(s) 44, 135
Mox20I TGGCCA 1 cut(s) 417
MscI TGGCCA 1 cut(s) 417
Msp20I TGGCCA 1 cut(s) 417
MspI CCGG 1 cut(s) 201
MspR9I CCNGG 2 cut(s) 201, 202
MvnI CGCG 1 cut(s) 24
MwoI GCNNNNNNNGC 3 cut(s) 219, 359, 368
NciI CCSGG 2 cut(s) 201, 202
NcoI CCATGG 2 cut(s) 175, 286
NdeII GATC 1 cut(s) 271
NlaIII CATG 5 cut(s) 179, 290, 410, 450, 477
NlaIV GGNNCC 2 cut(s) 136, 284
NsbI TGCGCA 1 cut(s) 339
NspI RCATGY 1 cut(s) 450
PaqCI CACCTGC 1 cut(s) 148
PcsI WCGNNNNNNNCGW 1 cut(s) 239
PfeI GAWTC 1 cut(s) 295
PkrI GCNGC 3 cut(s) 23, 54, 352
PspN4I GGNNCC 2 cut(s) 136, 284
PspPI GGNCC 3 cut(s) 19, 135, 282
PstI CTGCAG 2 cut(s) 57, 355
PsuI RGATCY 1 cut(s) 271
SatI GCNGC 3 cut(s) 22, 53, 351
Sau3AI GATC 1 cut(s) 271
Sau96I GGNCC 3 cut(s) 19, 135, 282
ScrFI CCNGG 2 cut(s) 201, 202
SetI ASST 5 cut(s) 162, 188, 197, 319, 442
SfaNI GCATC 2 cut(s) 325, 358
SfcI CTRYAG 2 cut(s) 53, 351
SinI GGWCC 1 cut(s) 135
SmaI CCCGGG 1 cut(s) 202
Sse9I AATT 2 cut(s) 117, 429
SsiI CCGC 3 cut(s) 22, 132, 470
SspI AATATT 1 cut(s) 9
SspMI CTAG 1 cut(s) 330
StyD4I CCNGG 2 cut(s) 199, 200
StyI CCWWGG 2 cut(s) 175, 286
TaaI ACNGT 2 cut(s) 81, 393
TaqI TCGA 1 cut(s) 242
TasI AATT 2 cut(s) 117, 429
TauI GCSGC 1 cut(s) 24
TfiI GAWTC 1 cut(s) 295
TseI GCWGC 2 cut(s) 52, 350
TspMI CCCGGG 1 cut(s) 200
VpaK11BI GGWCC 1 cut(s) 135
XbaI TCTAGA 1 cut(s) 329
XceI RCATGY 1 cut(s) 450
XmaI CCCGGG 1 cut(s) 200
XspI CTAG 1 cut(s) 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.