Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0013401

Physical Location & Seq

Genomic Coordinates Forward (+)

38871486 .. 38884256

Gene Structure 12771 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029449

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2535 bp

ATGGAATCAAGGCCGAGGCCAAGCTCCGGCCGATCAACGCCGCTCCGGGACTCCAATGACTCCGACAAGATGGAGGCCACTGGTCTCTGGGACGCCCTCGAATGGACCTTTGAGCCGGTCTCACGCTCCGTTCCACGCGCCGCTTCGCATTTGAGGTTGGATTGCTTGCTTGAAGGTGAGCAAGTTGAAGTTGAGTCTCCAACAATTTCAAGATTGCCCTTGTCCTGTCCAATTTCTTTCATTTCTTTGGTGAATACCAACCATACCTCCGCCATTTTAGAAATCTATTTTTTCTTTTCTCCTGTTGTAAAGCATCAATCAACCCCTCGTCAATCTGACAAGACTCCATCAAGAAGACTGCTTCAGGTCATTGGCAAAGACATGAGGATAATAGTCTTTGGGTTTCGCCCTAAAACAAGGCAGAGACATGAAGTGTTTGATGCATTATTAAAGTGTACAAAGCCAGCGAGCCTATGGGATCTTTATGCTTTTGTTTCTGGACCTTCCAAATATAGTAACACTAATCCAAAAGTGCGGTTACTAAATGAGTATTTTCGGCTTCTTGGAAAAGGCTCCCTTGCGTCTATGAATATGATTGAAGATGGGTCATTCACTTTGTCAAATGATTTCTGGAGAATAAGTAGTGTAAATTCTAGCTATTCATTGTGCCAGAGTTATCCATTTGCCTTGATAATTCCGAAATCCATTACTGATGAAGAACTGCTCCAAGCTTCCAGCTTCCGTGCAAGAAGTCGGTTGCCTGTAGTTACATGGTGTCATCCAAGAACAGGAGCAGTTCTGGCACGCTCATCTCAACCCTTAGTTGGTATCATGATGAATATGAGGAGCAACACAGATGAAAAGCTCGTTGCTGCCCTTTGCTCTGAACTTGCTGGTAGTAGTGGTAAAAGAAGGAAGCTCTATATAGCTGATGCAAGACCACGAAAGAATGCTTTAGCTAATGGTGCAATGGGAGGTGGTTCTGAGTCATCTTCAAATTACTTTCAGTCTGAGATTGTTTTCTTTGGGATAGACAACATCCATGCGATGAGAGATAGTTTTGCTCGGCTCAGAGATTACTTAGATACTCATGGTACAGCTTCATCGGATGGAATGTCATCTTTCTTGAGGGATGGTGGTTGGAGTTGGGGTGGAGGCAACCTTAGCAGTATGTCTGCTTCAGTGTCAACTCTTGGAGACAGTGGTTGGTTTAAACATGTTCAAAGTGTGTTGGCTGGTTCGGCTTGGATTGCTGCACGTGTTGCTCTGGAATCGGCATCGGTGCTTGTACATTGCAGTGATGGATGGGATAGAACTACTCAGCTGGTTTCGCTTGCCATTTTGTTGCTTGATCCATACTATCGGACTTTAAATGGGTTCCAGGCACTCGTTGAGAAAGATTGGCTAGCATTTGGTCACCCATTTGCAGATCGAGTTGGCATGCCAACTGTAACAGGAAGTACAGGCATACCTTCTGAGTTACCAAGGCAGTCTTCTACCGGGAGTATCCAATCATCACCCAATCGCCAGTCAGGAGCATCCTTCACATCTCAAGCTCCTACATCTCATGCACAGACTTCAAACAACTATTCTCCCATATTTTTGCAGTGGGTAGATTGTGTTTCACAGCTATTGCGGATGTATCCTTTTGCTTTTGAGTTCTCTTCGGTTTTCCTGGTGGATCTATTGGATTGTGTTCTATCCTGCCGCTTTGGAAACTTCTTTTGTAATAGTGAAAAGGAGAGGCAGCAGTGTGGGGTACCTGAAGCATGTGGATGCATGTGGGCGTATTTGGCCGATTTGCGCTCTTTAGATGGAAATTCTCATGTGCACTATAATTATTTCTATGATCCACTGAAACACAATGGTCCACTATTACCTCCAGCAGCTGCTTTAGCACCAACTTTATGGCCACAATTCCATTTGCGATGGGCTTGTCCCTCTGAGGCTCAAGCTGGAGAGCTCGAAGCTGAATTTAGGAAGATGGATGTTCAATTTGCGGAACTGCAGAAGGCAAAGGAAGTGGCAGAAAGGAAAGCTAAAGAAATCACTACTCTCCTGGAAACCTTAAGTGCAGATGTAAGACATGAAAAGCGAGTCAGCAGCTCGGCTATGAAGTTGGTCAAGAGGGCAAACAAGGAAAGTGAGGCCATGAAGCGAGCTATACAGTCACTGGGGTGCAAGGTACATTTTTCAAGTAGTGGAGATTGCACTGTTGACATCGAAAGCAGTGTAATTGAAGGTCCACAAAAATTAGTTTGTTCTTCTTCGAAAAGACAAGCAGATGGCACAGTGCAGAATGATGAGAAATCAGACCTGTCTGTTTCCATTACAGTCATGGCAGATGATGTTGATGGCAGCAATCCAATTGGTCGAGTTTGTGAAACTTTATGCCCATTACGCATGCGAGATGGAGGCTGCAGGTGGCCAGATGCTGGCTGTGCTCAATTGGGCAGCCAATTTGTTGGACTGAAGGCCAACTTTGAGGCATTTGATCAACTTTCAATCTATGATAGTTATTTCCAGCCTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004438 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009987 GO:0009991 GO:0010035 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0023052 GO:0030258 GO:0031410 GO:0031668 GO:0031982 GO:0033554 GO:0034593 GO:0035556 GO:0042221 GO:0042578 GO:0042631 GO:0043226 GO:0043227 GO:0043229 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046486 GO:0046488 GO:0046839 GO:0046856 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0052629 GO:0052744 GO:0052866 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0071704 GO:0080134 GO:0097708 GO:0104004 GO:0106018 GO:1901700 GO:1901701 GO:2000070

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Myotub-related

Protein Analysis

845

Amino Acids

93.3

Weight (kDa)

7.48

Isoelectric Point (pI)

53.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myotub-related	PF06602	199 - 583	1.9e-125	Myotubularin-like phosphatase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0013401)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10550 AT5G04540
fragaria_vesca	FvH4_7g06400
malus_domestica	MD02G1244600.v1.1 MD07G1072600.v1.1
prunus_persica	Prupe.2G090700_v2.0.a1 Prupe.2G090700_v2.0.a1
pyrus_communis	pycom02g21050 pycom07g05570
rosa_chinensis	RchiOBHm_Chr1g0334491
rosa_laevigata	RLG00000029449
rosa_roxburghii	Rroxscaffold_4G00316800
rosa_rugosa	Rorug01G0114300
rosa_samantha	Rh1AG139500 Rh1BG105700 Rh1CG131400 Rh1DG143400
rosa_wichuraiana	Rw1G011500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2412
Acc36I	ACCTGC	1 cut(s)	2412
Acc65I	GGTACC	1 cut(s)	1759
AccB1I	GGYRCC	1 cut(s)	1759
AccB7I	CCANNNNNTGG	1 cut(s)	2435
AccBSI	CCGCTC	1 cut(s)	43
AccII	CGCG	1 cut(s)	138
AciI	CCGC	7 cut(s)	41, 141, 270, 535, 1636, 1708, 2000
AclWI	GGATC	4 cut(s)	486, 1346, 1689, 1844
AcoI	YGGCCR	4 cut(s)	28, 1794, 1910, 2426
AcsI	RAATTY	3 cut(s)	649, 1819, 1973
AcuI	CTGAAG	4 cut(s)	347, 1164, 1785, 2492
AcvI	CACGTG	1 cut(s)	1259
AcyI	GRCGYC	1 cut(s)	93
AfaI	GTAC	6 cut(s)	457, 1096, 1290, 1462, 1761, 2187
AfiI	CCNNNNNNNGG	5 cut(s)	26, 102, 788, 824, 2435
AflII	CTTAAG	1 cut(s)	2068
AflIII	ACRYGT	2 cut(s)	1216, 1258
AjnI	CCWGG	3 cut(s)	1380, 1674, 2058
AjuI	GAANNNNNNNTTGG	2 cut(s)	1477, 1509
AleI	CACNNNNGTG	1 cut(s)	2176
Alw21I	GWGCWC	3 cut(s)	1833, 1965, 2446
Alw26I	GTCTC	5 cut(s)	89, 124, 201, 418, 1191
Alw44I	GTGCAC	1 cut(s)	1829
AlwI	GGATC	4 cut(s)	486, 1346, 1689, 1844
AlwNI	CAGNNNCTG	3 cut(s)	1889, 2173, 2435
AoxI	GGCC	9 cut(s)	11, 17, 28, 75, 1794, 1910, 2148, 2426, 2475
ApaLI	GTGCAC	1 cut(s)	1829
ApeKI	GCWGC	9 cut(s)	872, 1253, 1747, 1886, 1889, 2103, 2358, 2418, 2454
ApoI	RAATTY	3 cut(s)	649, 1819, 1973
Asp718I	GGTACC	1 cut(s)	1759
AspLEI	GCGC	2 cut(s)	140, 1806
AspS9I	GGNCC	4 cut(s)	105, 500, 1868, 2243
AsuC2I	CCSGG	2 cut(s)	47, 1501
AsuHPI	GGTGA	4 cut(s)	188, 262, 1409, 1509
AsuII	TTCGAA	1 cut(s)	2270
AsuNHI	GCTAGC	1 cut(s)	1405
AvaII	GGWCC	4 cut(s)	105, 500, 1868, 2243
BaeGI	GKGCMC	1 cut(s)	1833
BalI	TGGCCA	2 cut(s)	1912, 2428
BanI	GGYRCC	1 cut(s)	1759
BanII	GRGCYC	1 cut(s)	1965
BarI	GAAGNNNNNNTAC	2 cut(s)	1162, 1194
BbrPI	CACGTG	1 cut(s)	1259
BbsI	GAAGAC	2 cut(s)	361, 1485
Bbv12I	GWGCWC	3 cut(s)	1833, 1965, 2446
BbvI	GCAGC	9 cut(s)	859, 1240, 1759, 1876, 1898, 2115, 2370, 2405, 2466
BciT130I	CCWGG	3 cut(s)	1382, 1676, 2060
BciVI	GTATCC	2 cut(s)	1517, 1653
BclI	TGATCA	1 cut(s)	2494
BcnI	CCSGG	2 cut(s)	47, 1501
BcoDI	GTCTC	5 cut(s)	89, 124, 201, 418, 1191
BfaI	CTAG	2 cut(s)	654, 1406
BfmI	CTRYAG	3 cut(s)	762, 2006, 2419
BfrI	CTTAAG	1 cut(s)	2068
BfuAI	ACCTGC	1 cut(s)	2412
BfuI	GTATCC	2 cut(s)	1517, 1653
Bme1390I	CCNGG	5 cut(s)	47, 1382, 1501, 1676, 2060
Bme18I	GGWCC	4 cut(s)	105, 500, 1868, 2243
BmgT120I	GGNCC	4 cut(s)	105, 500, 1868, 2243
BmiI	GGNNCC	3 cut(s)	574, 1379, 1761
BmrFI	CCNGG	5 cut(s)	47, 1382, 1501, 1676, 2060
BmrI	ACTGGG	1 cut(s)	2183
BmsI	GCATC	7 cut(s)	322, 430, 922, 1286, 1547, 1766, 2422
BmtI	GCTAGC	1 cut(s)	1409
BmuI	ACTGGG	1 cut(s)	2183
BpiI	GAAGAC	2 cut(s)	361, 1485
BplI	GAGNNNNNCTC	2 cut(s)	104, 136
BpmI	CTGGAG	3 cut(s)	652, 1866, 1977
Bpu10I	CCTNAGC	1 cut(s)	1163
Bpu14I	TTCGAA	1 cut(s)	2270
BpuEI	CTTGAG	3 cut(s)	1147, 1536, 1935
BpuMI	CCSGG	2 cut(s)	47, 1501
BsaAI	YACGTR	1 cut(s)	1259
BsaHI	GRCGYC	1 cut(s)	93
BsaI	GGTCTC	2 cut(s)	89, 124
BsaJI	CCNNGG	2 cut(s)	14, 1484
BsaXI	ACNNNNNCTCC	6 cut(s)	251, 281, 625, 655, 1135, 1165
Bsc4I	CCNNNNNNNGG	5 cut(s)	26, 102, 788, 824, 2435
Bse118I	RCCGGY	1 cut(s)	115
Bse1I	ACTGG	3 cut(s)	85, 1528, 2178
Bse3DI	GCAATG	2 cut(s)	975, 1291
BseBI	CCWGG	3 cut(s)	1382, 1676, 2060
BseDI	CCNNGG	2 cut(s)	14, 1484
BseGI	GGATG	9 cut(s)	778, 1038, 1114, 1138, 1310, 1538, 1644, 1781, 1993
BseLI	CCNNNNNNNGG	5 cut(s)	26, 102, 788, 824, 2435
BseMI	GCAATG	2 cut(s)	975, 1291
BseMII	CTCAG	6 cut(s)	975, 1002, 1084, 1334, 1467, 1935
BseNI	ACTGG	3 cut(s)	85, 1528, 2178
BseRI	GAGGAG	1 cut(s)	859
BseSI	GKGCMC	1 cut(s)	1833
BseX3I	CGGCCG	1 cut(s)	28
BseXI	GCAGC	9 cut(s)	859, 1240, 1759, 1876, 1898, 2115, 2370, 2405, 2466
BsgI	GTGCAG	3 cut(s)	1239, 2094, 2315
Bsh1236I	CGCG	1 cut(s)	138
Bsh1285I	CGRYCG	1 cut(s)	31
BshFI	GGCC	9 cut(s)	13, 19, 30, 77, 1796, 1912, 2150, 2428, 2477
BshNI	GGYRCC	1 cut(s)	1759
BsiEI	CGRYCG	1 cut(s)	31
BsiHKAI	GWGCWC	3 cut(s)	1833, 1965, 2446
BsiSI	CCGG	4 cut(s)	27, 46, 116, 1500
BslFI	GGGAC	3 cut(s)	62, 104, 1923
BslI	CCNNNNNNNGG	5 cut(s)	26, 102, 788, 824, 2435
BsmAI	GTCTC	5 cut(s)	89, 124, 201, 418, 1191
BsmFI	GGGAC	3 cut(s)	62, 104, 1923
BsmI	GAATGC	1 cut(s)	955
BsnI	GGCC	9 cut(s)	13, 19, 30, 77, 1796, 1912, 2150, 2428, 2477
Bso31I	GGTCTC	2 cut(s)	89, 124
Bsp119I	TTCGAA	1 cut(s)	2270
Bsp1286I	GDGCHC	3 cut(s)	1833, 1965, 2446
Bsp1407I	TGTACA	2 cut(s)	455, 1288
Bsp143I	GATC	7 cut(s)	32, 478, 1351, 1429, 1681, 1849, 2494
BspACI	CCGC	7 cut(s)	41, 141, 270, 535, 1636, 1708, 2000
BspANI	GGCC	9 cut(s)	13, 19, 30, 77, 1796, 1912, 2150, 2428, 2477
BspCNI	CTCAG	6 cut(s)	976, 1003, 1083, 1333, 1468, 1936
BspFNI	CGCG	1 cut(s)	138
BspHI	TCATGA	1 cut(s)	831
BspLI	GGNNCC	3 cut(s)	574, 1379, 1761
BspMAI	CTGCAG	2 cut(s)	2010, 2423
BspMI	ACCTGC	1 cut(s)	2412
BspOI	GCTAGC	1 cut(s)	1409
BspPI	GGATC	4 cut(s)	486, 1346, 1689, 1844
BspT104I	TTCGAA	1 cut(s)	2270
BspT107I	GGYRCC	1 cut(s)	1759
BspTI	CTTAAG	1 cut(s)	2068
BspTNI	GGTCTC	2 cut(s)	89, 124
BsrBI	CCGCTC	1 cut(s)	43
BsrDI	GCAATG	2 cut(s)	975, 1291
BsrFI	RCCGGY	1 cut(s)	115
BsrGI	TGTACA	2 cut(s)	455, 1288
BsrI	ACTGG	3 cut(s)	85, 1528, 2178
BssAI	RCCGGY	1 cut(s)	115
BssECI	CCNNGG	2 cut(s)	14, 1484
BssMI	GATC	7 cut(s)	32, 478, 1351, 1429, 1681, 1849, 2494
BssNI	GRCGYC	1 cut(s)	93
BssT1I	CCWWGG	1 cut(s)	1484
Bst2UI	CCWGG	3 cut(s)	1382, 1676, 2060
Bst4CI	ACNGT	6 cut(s)	1202, 1450, 2169, 2215, 2293, 2335
Bst6I	CTCTTC	1 cut(s)	1669
BstACI	GRCGYC	1 cut(s)	93
BstAFI	CTTAAG	1 cut(s)	2068
BstAPI	GCANNNNNTGC	1 cut(s)	1262
BstAUI	TGTACA	2 cut(s)	455, 1288
BstBAI	YACGTR	1 cut(s)	1259
BstBI	TTCGAA	1 cut(s)	2270
BstDEI	CTNAG	9 cut(s)	820, 984, 1011, 1070, 1081, 1163, 1320, 1476, 1944
BstEII	GGTNACC	1 cut(s)	1415
BstF5I	GGATG	9 cut(s)	778, 1038, 1114, 1138, 1310, 1538, 1644, 1781, 1993
BstFNI	CGCG	1 cut(s)	138
BstHHI	GCGC	2 cut(s)	140, 1806
BstKTI	GATC	7 cut(s)	35, 481, 1354, 1432, 1684, 1852, 2497
BstMAI	GTCTC	5 cut(s)	89, 124, 201, 418, 1191
BstMBI	GATC	7 cut(s)	32, 478, 1351, 1429, 1681, 1849, 2494
BstMCI	CGRYCG	1 cut(s)	31
BstNI	CCWGG	3 cut(s)	1382, 1676, 2060
BstNSI	RCATGY	5 cut(s)	1220, 1444, 1773, 1783, 2407
BstPI	GGTNACC	1 cut(s)	1415
BstSCI	CCNGG	5 cut(s)	45, 1380, 1499, 1674, 2058
BstSFI	CTRYAG	3 cut(s)	762, 2006, 2419
BstSLI	GKGCMC	1 cut(s)	1833
BstUI	CGCG	1 cut(s)	138
BstV1I	GCAGC	9 cut(s)	859, 1240, 1759, 1876, 1898, 2115, 2370, 2405, 2466
BstV2I	GAAGAC	2 cut(s)	361, 1485
BstX2I	RGATCY	2 cut(s)	478, 1681
BstXI	CCANNNNNNTGG	2 cut(s)	1908, 2465
BstYI	RGATCY	2 cut(s)	478, 1681
BstZI	CGGCCG	1 cut(s)	28
BsuI	GTATCC	2 cut(s)	1517, 1653
BsuRI	GGCC	9 cut(s)	13, 19, 30, 77, 1796, 1912, 2150, 2428, 2477
BtgZI	GCGATG	2 cut(s)	1061, 1942
BtsCI	GGATG	9 cut(s)	778, 1038, 1114, 1138, 1310, 1538, 1644, 1781, 1993
BtsI	GCAGTG	4 cut(s)	1303, 1613, 1757, 2236
BveI	ACCTGC	1 cut(s)	2412
CaiI	CAGNNNCTG	3 cut(s)	1889, 2173, 2435
CciI	TCATGA	1 cut(s)	831
CfoI	GCGC	2 cut(s)	140, 1806
Cfr10I	RCCGGY	1 cut(s)	115
Cfr13I	GGNCC	4 cut(s)	105, 500, 1868, 2243
CseI	GACGC	2 cut(s)	101, 570
Csp6I	GTAC	6 cut(s)	456, 1095, 1289, 1461, 1760, 2186
CspCI	CAANNNNNGTGG	2 cut(s)	2004, 2039
CviQI	GTAC	6 cut(s)	456, 1095, 1289, 1461, 1760, 2186
DdeI	CTNAG	9 cut(s)	820, 984, 1011, 1070, 1081, 1163, 1320, 1476, 1944
DpnI	GATC	7 cut(s)	34, 480, 1353, 1431, 1683, 1851, 2496
DpnII	GATC	7 cut(s)	32, 478, 1351, 1429, 1681, 1849, 2494
DraI	TTTAAA	2 cut(s)	1213, 1371
EaeI	YGGCCR	4 cut(s)	28, 1794, 1910, 2426
EagI	CGGCCG	1 cut(s)	28
Eam1104I	CTCTTC	1 cut(s)	1669
EarI	CTCTTC	1 cut(s)	1669
EciI	GGCGGA	1 cut(s)	259
Ecl136II	GAGCTC	1 cut(s)	1963
EclXI	CGGCCG	1 cut(s)	28
Eco130I	CCWWGG	1 cut(s)	1484
Eco24I	GRGCYC	1 cut(s)	1965
Eco31I	GGTCTC	2 cut(s)	89, 124
Eco47I	GGWCC	4 cut(s)	105, 500, 1868, 2243
Eco52I	CGGCCG	1 cut(s)	28
Eco53kI	GAGCTC	1 cut(s)	1963
Eco57I	CTGAAG	4 cut(s)	347, 1164, 1785, 2492
Eco72I	CACGTG	1 cut(s)	1259
Eco91I	GGTNACC	1 cut(s)	1415
EcoICRI	GAGCTC	1 cut(s)	1963
EcoO65I	GGTNACC	1 cut(s)	1415
EcoRII	CCWGG	3 cut(s)	1380, 1674, 2058
EcoT14I	CCWWGG	1 cut(s)	1484
EcoT22I	ATGCAT	2 cut(s)	445, 1781
EcoT38I	GRGCYC	1 cut(s)	1965
ErhI	CCWWGG	1 cut(s)	1484
FalI	AAGNNNNNCTT	6 cut(s)	561, 593, 1477, 1509, 2465, 2497
FaqI	GGGAC	3 cut(s)	62, 104, 1923
FbaI	TGATCA	1 cut(s)	2494
FokI	GGATG	9 cut(s)	765, 1025, 1121, 1145, 1317, 1525, 1651, 1788, 2000
FriOI	GRGCYC	1 cut(s)	1965
FspBI	CTAG	2 cut(s)	654, 1406
GlaI	GCGC	2 cut(s)	139, 1805
GsuI	CTGGAG	3 cut(s)	652, 1866, 1977
HaeIII	GGCC	9 cut(s)	13, 19, 30, 77, 1796, 1912, 2150, 2428, 2477
HapII	CCGG	4 cut(s)	27, 46, 116, 1500
HgaI	GACGC	2 cut(s)	101, 570
HhaI	GCGC	2 cut(s)	140, 1806
Hin1I	GRCGYC	1 cut(s)	93
Hin6I	GCGC	2 cut(s)	138, 1804
HinP1I	GCGC	2 cut(s)	138, 1804
HincII	GTYRAC	2 cut(s)	1188, 2218
HindII	GTYRAC	2 cut(s)	1188, 2218
HindIII	AAGCTT	1 cut(s)	729
HinfI	GANTC	8 cut(s)	5, 50, 59, 194, 343, 986, 1271, 2097
HpaII	CCGG	4 cut(s)	27, 46, 116, 1500
HphI	GGTGA	4 cut(s)	188, 262, 1409, 1509
Hpy166II	GTNNAC	6 cut(s)	456, 1188, 1831, 1871, 2218, 2246
Hpy188III	TCNNGA	9 cut(s)	210, 351, 498, 631, 832, 1126, 1268, 1533, 2125
Hpy8I	GTNNAC	6 cut(s)	456, 1188, 1831, 1871, 2218, 2246
HpyAV	CCTTC	8 cut(s)	167, 513, 906, 1482, 1552, 2005, 2234, 2467
HpyCH4III	ACNGT	6 cut(s)	1202, 1450, 2169, 2215, 2293, 2335
HpyCH4IV	ACGT	1 cut(s)	1258
HpyF3I	CTNAG	9 cut(s)	820, 984, 1011, 1070, 1081, 1163, 1320, 1476, 1944
HpySE526I	ACGT	1 cut(s)	1258
Hsp92I	GRCGYC	1 cut(s)	93
HspAI	GCGC	2 cut(s)	138, 1804
KpnI	GGTACC	1 cut(s)	1763
Ksp22I	TGATCA	1 cut(s)	2494
Kzo9I	GATC	7 cut(s)	32, 478, 1351, 1429, 1681, 1849, 2494
LmnI	GCTCC	9 cut(s)	29, 48, 131, 578, 729, 791, 846, 1535, 1561
Lsp1109I	GCAGC	9 cut(s)	859, 1240, 1759, 1876, 1898, 2115, 2370, 2405, 2466
LweI	GCATC	7 cut(s)	322, 430, 922, 1286, 1547, 1766, 2422
MaeI	CTAG	2 cut(s)	654, 1406
MaeII	ACGT	1 cut(s)	1258
MaeIII	GTNAC	7 cut(s)	515, 537, 766, 1415, 1450, 1479, 2169
MalI	GATC	7 cut(s)	34, 480, 1353, 1431, 1683, 1851, 2496
MbiI	CCGCTC	1 cut(s)	43
MboI	GATC	7 cut(s)	32, 478, 1351, 1429, 1681, 1849, 2494
MboII	GAAGA	9 cut(s)	366, 611, 728, 984, 1485, 1656, 1993, 2256, 2259
MfeI	CAATTG	2 cut(s)	2367, 2447
MflI	RGATCY	2 cut(s)	478, 1681
MhlI	GDGCHC	3 cut(s)	1833, 1965, 2446
MlsI	TGGCCA	2 cut(s)	1912, 2428
MluNI	TGGCCA	2 cut(s)	1912, 2428
MlyI	GAGTC	6 cut(s)	44, 53, 203, 337, 995, 2106
MmeI	TCCRAC	5 cut(s)	87, 138, 224, 1121, 2446
Mox20I	TGGCCA	2 cut(s)	1912, 2428
Mph1103I	ATGCAT	2 cut(s)	445, 1781
MscI	TGGCCA	2 cut(s)	1912, 2428
MseI	TTAA	4 cut(s)	449, 1212, 1370, 2069
MslI	CAYNNNNRTG	3 cut(s)	1296, 1774, 2176
Msp20I	TGGCCA	2 cut(s)	1912, 2428
MspA1I	CMGCKG	2 cut(s)	1324, 1889
MspCI	CTTAAG	1 cut(s)	2068
MspI	CCGG	4 cut(s)	27, 46, 116, 1500
MspR9I	CCNGG	5 cut(s)	47, 1382, 1501, 1676, 2060
MssI	GTTTAAAC	1 cut(s)	1213
MunI	CAATTG	2 cut(s)	2367, 2447
Mva1269I	GAATGC	1 cut(s)	955
MvaI	CCWGG	3 cut(s)	1382, 1676, 2060
MvnI	CGCG	1 cut(s)	138
NciI	CCSGG	2 cut(s)	47, 1501
NdeII	GATC	7 cut(s)	32, 478, 1351, 1429, 1681, 1849, 2494
NheI	GCTAGC	1 cut(s)	1405
NlaIV	GGNNCC	3 cut(s)	574, 1379, 1761
NmeAIII	GCCGAG	3 cut(s)	39, 1045, 2087
NmuCI	GTSAC	2 cut(s)	1415, 2169
NsiI	ATGCAT	2 cut(s)	445, 1781
NspI	RCATGY	5 cut(s)	1220, 1444, 1773, 1783, 2407
NspV	TTCGAA	1 cut(s)	2270
OliI	CACNNNNGTG	1 cut(s)	2176
PaeI	GCATGC	2 cut(s)	1444, 2407
PagI	TCATGA	1 cut(s)	831
PaqCI	CACCTGC	1 cut(s)	2412
PciI	ACATGT	1 cut(s)	1216
PctI	GAATGC	1 cut(s)	955
PfeI	GAWTC	2 cut(s)	5, 1271
PflMI	CCANNNNNTGG	1 cut(s)	2435
PfoI	TCCNGGA	2 cut(s)	45, 2058
PleI	GAGTC	6 cut(s)	44, 53, 202, 337, 994, 2105
PmaCI	CACGTG	1 cut(s)	1259
PmeI	GTTTAAAC	1 cut(s)	1213
PmlI	CACGTG	1 cut(s)	1259
PpsI	GAGTC	6 cut(s)	44, 53, 202, 337, 994, 2105
Ppu21I	YACGTR	1 cut(s)	1259
PscI	ACATGT	1 cut(s)	1216
Psp124BI	GAGCTC	1 cut(s)	1965
Psp6I	CCWGG	3 cut(s)	1380, 1674, 2058
PspCI	CACGTG	1 cut(s)	1259
PspEI	GGTNACC	1 cut(s)	1415
PspGI	CCWGG	3 cut(s)	1380, 1674, 2058
PspN4I	GGNNCC	3 cut(s)	574, 1379, 1761
PspPI	GGNCC	4 cut(s)	105, 500, 1868, 2243
PstI	CTGCAG	2 cut(s)	2010, 2423
PstNI	CAGNNNCTG	3 cut(s)	1889, 2173, 2435
PsuI	RGATCY	2 cut(s)	478, 1681
PvuII	CAGCTG	2 cut(s)	1324, 1889
RsaI	GTAC	6 cut(s)	457, 1096, 1290, 1462, 1761, 2187
RsaNI	GTAC	6 cut(s)	456, 1095, 1289, 1461, 1760, 2186
RseI	CAYNNNNRTG	3 cut(s)	1296, 1774, 2176
SacI	GAGCTC	1 cut(s)	1965
SaqAI	TTAA	4 cut(s)	449, 1212, 1370, 2069
Sau3AI	GATC	7 cut(s)	32, 478, 1351, 1429, 1681, 1849, 2494
Sau96I	GGNCC	4 cut(s)	105, 500, 1868, 2243
SchI	GAGTC	6 cut(s)	44, 53, 203, 337, 995, 2106
ScrFI	CCNGG	5 cut(s)	47, 1382, 1501, 1676, 2060
SduI	GDGCHC	3 cut(s)	1833, 1965, 2446
SfaNI	GCATC	7 cut(s)	322, 430, 922, 1286, 1547, 1766, 2422
SfcI	CTRYAG	3 cut(s)	762, 2006, 2419
SfuI	TTCGAA	1 cut(s)	2270
SinI	GGWCC	4 cut(s)	105, 500, 1868, 2243
SmiMI	CAYNNNNRTG	3 cut(s)	1296, 1774, 2176
SmlI	CTYRAG	4 cut(s)	1126, 1551, 1950, 2068
SmoI	CTYRAG	4 cut(s)	1126, 1551, 1950, 2068
SphI	GCATGC	2 cut(s)	1444, 2407
SsiI	CCGC	7 cut(s)	41, 141, 270, 535, 1636, 1708, 2000
SspMI	CTAG	2 cut(s)	654, 1406
SstI	GAGCTC	1 cut(s)	1965
StyD4I	CCNGG	5 cut(s)	45, 1380, 1499, 1674, 2058
StyI	CCWWGG	1 cut(s)	1484
TaaI	ACNGT	6 cut(s)	1202, 1450, 2169, 2215, 2293, 2335
TaiI	ACGT	1 cut(s)	1261
TaqI	TCGA	6 cut(s)	99, 1432, 1965, 2223, 2270, 2374
TatI	WGTACW	3 cut(s)	455, 1288, 1460
TauI	GCSGC	3 cut(s)	43, 143, 1710
TfiI	GAWTC	2 cut(s)	5, 1271
Tru1I	TTAA	4 cut(s)	449, 1212, 1370, 2069
Tru9I	TTAA	4 cut(s)	449, 1212, 1370, 2069
TseFI	GTSAC	2 cut(s)	1415, 2169
TseI	GCWGC	9 cut(s)	872, 1253, 1747, 1886, 1889, 2103, 2358, 2418, 2454
Tsp45I	GTSAC	2 cut(s)	1415, 2169
TspGWI	ACGGA	2 cut(s)	118, 731
Van91I	CCANNNNNTGG	1 cut(s)	2435
Vha464I	CTTAAG	1 cut(s)	2068
VneI	GTGCAC	1 cut(s)	1829
VpaK11BI	GGWCC	4 cut(s)	105, 500, 1868, 2243
XapI	RAATTY	3 cut(s)	649, 1819, 1973
XceI	RCATGY	5 cut(s)	1220, 1444, 1773, 1783, 2407
XcmI	CCANNNNNNNNNTGG	2 cut(s)	471, 2335
XspI	CTAG	2 cut(s)	654, 1406
Zsp2I	ATGCAT	2 cut(s)	445, 1781

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.