Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0013401

Physical Location & Seq

Genomic Coordinates Reverse (-)

20198024 .. 20199574

Gene Structure 1551 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0114300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGAGGAAGATGAAGTCCAGTCCGAGGAATACGAAGAATTTCCGCCAAACACGCAGGACACTAATGTATCGATGGTTGGTGATAGGCCAAATTGCTTACATTTTAAGGGCAAGCCGTATGAAGATCTTGGGCCTGAAGACATGATAGGTGTGGAGTTTGGATCCGTAAATGAAGTGGACTCATTCTATTCATTTTATTCACTTGCCATGGGTTTTAGCTTCAGAAGGGAAAAGTTGGACAAAGATGCTAGTATCGTTGTGAGAAGGAAGCTGGTTTGTAGTAAGGAAGGGGTTAGAAAGAAAAAATGTCGCACGAAAGAGCAGATTTCAAACTCCTATGTTTCTGTTTCATATAACAAAGCCTCGAAATCATCATTTACTCCATCTGTTGGCATTCCTGCGAAGGAAAAAGCGCCGATTGGTGACCGGTCGGAATCTCATGATAACAGTGGAAATGCCATCAAAAGAAAGGGCATCCGCTCTCACAGAATTACAAGAGGAAATTGCCTTGCCCGTATAACTGTCCGTTTATGCAAGCAAACCAATAAGTTTCGAGCGGTTGAATTTATAACAGAACACAATCATGCCCTTGCTCAATTGGAATTGAAATTGTTCCTAAGATCTAATAGACATGTTTCAGACCATGCTTTGGCTCAAGTGACTTCTCTTAGGAAGGTGTCAGTGACCAGTTGCCGTGCATATGAGTTGTTGGTTCATCAAGCAAGGGACATGAGTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004438 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009987 GO:0009991 GO:0010035 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0023052 GO:0030258 GO:0031410 GO:0031668 GO:0031982 GO:0033554 GO:0034593 GO:0035556 GO:0042221 GO:0042578 GO:0042631 GO:0043226 GO:0043227 GO:0043229 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046486 GO:0046488 GO:0046839 GO:0046856 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0052629 GO:0052744 GO:0052866 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0071704 GO:0080134 GO:0097708 GO:0104004 GO:0106018 GO:1901700 GO:1901701 GO:2000070

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Myotub-related

Protein Analysis

246

Amino Acids

27.92

Weight (kDa)

9.16

Isoelectric Point (pI)

40.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAR1	PF03101	61 - 112	5.7e-07	FAR1 DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0013401)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10550 AT5G04540
fragaria_vesca	FvH4_7g06400
malus_domestica	MD02G1244600.v1.1 MD07G1072600.v1.1
prunus_persica	Prupe.2G090700_v2.0.a1 Prupe.2G090700_v2.0.a1
pyrus_communis	pycom02g21050 pycom07g05570
rosa_chinensis	RchiOBHm_Chr1g0334491
rosa_laevigata	RLG00000029449
rosa_roxburghii	Rroxscaffold_4G00316800
rosa_rugosa	Rorug01G0114300
rosa_samantha	Rh1AG139500 Rh1BG105700 Rh1CG131400 Rh1DG143400
rosa_wichuraiana	Rw1G011500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	569
AccB7I	CCANNNNNTGG	2 cut(s)	389, 649
AccBSI	CCGCTC	2 cut(s)	480, 557
AciI	CCGC	3 cut(s)	44, 478, 557
AclWI	GGATC	2 cut(s)	156, 169
AcsI	RAATTY	2 cut(s)	38, 563
AcuI	CTGAAG	2 cut(s)	156, 205
AfiI	CCNNNNNNNGG	3 cut(s)	25, 389, 649
AflIII	ACRYGT	1 cut(s)	631
AgeI	ACCGGT	1 cut(s)	426
AgsI	TTSAA	3 cut(s)	330, 563, 607
AluBI	AGCT	2 cut(s)	219, 271
AluI	AGCT	2 cut(s)	219, 271
AlwI	GGATC	2 cut(s)	156, 169
AoxI	GGCC	2 cut(s)	86, 131
ApoI	RAATTY	2 cut(s)	38, 563
AsiGI	ACCGGT	1 cut(s)	426
Asp700I	GAANNNNTTC	2 cut(s)	39, 611
AspLEI	GCGC	1 cut(s)	415
AspS9I	GGNCC	1 cut(s)	131
AsuHPI	GGTGA	2 cut(s)	92, 434
BaeI	ACNNNNGTAYC	2 cut(s)	51, 84
BamHI	GGATCC	1 cut(s)	161
BbsI	GAAGAC	1 cut(s)	144
BccI	CCATC	3 cut(s)	67, 391, 467
BceAI	ACGGC	2 cut(s)	100, 678
BfaI	CTAG	1 cut(s)	249
BfoI	RGCGCY	1 cut(s)	416
BglII	AGATCT	2 cut(s)	124, 620
BmgT120I	GGNCC	1 cut(s)	131
BmiI	GGNNCC	1 cut(s)	163
BmsI	GCATC	2 cut(s)	235, 483
BpiI	GAAGAC	1 cut(s)	144
BpuEI	CTTGAG	1 cut(s)	639
Bsa29I	ATCGAT	1 cut(s)	71
BsaJI	CCNNGG	2 cut(s)	24, 207
BsaWI	WCCGGW	1 cut(s)	426
Bsc4I	CCNNNNNNNGG	3 cut(s)	25, 389, 649
Bse118I	RCCGGY	1 cut(s)	426
Bse1I	ACTGG	2 cut(s)	19, 687
BseCI	ATCGAT	1 cut(s)	71
BseDI	CCNNGG	2 cut(s)	24, 207
BseGI	GGATG	1 cut(s)	474
BseLI	CCNNNNNNNGG	3 cut(s)	25, 389, 649
BseNI	ACTGG	2 cut(s)	19, 687
Bsh1285I	CGRYCG	1 cut(s)	431
BshFI	GGCC	2 cut(s)	88, 133
BshTI	ACCGGT	1 cut(s)	426
BshVI	ATCGAT	1 cut(s)	71
BsiEI	CGRYCG	1 cut(s)	431
BsiSI	CCGG	1 cut(s)	427
BslI	CCNNNNNNNGG	3 cut(s)	25, 389, 649
BsmI	GAATGC	1 cut(s)	393
BsnI	GGCC	2 cut(s)	88, 133
Bsp143I	GATC	3 cut(s)	124, 161, 620
Bsp19I	CCATGG	1 cut(s)	207
BspACI	CCGC	3 cut(s)	44, 478, 557
BspANI	GGCC	2 cut(s)	88, 133
BspDI	ATCGAT	1 cut(s)	71
BspHI	TCATGA	1 cut(s)	439
BspLI	GGNNCC	1 cut(s)	163
BspPI	GGATC	2 cut(s)	156, 169
BsrBI	CCGCTC	2 cut(s)	480, 557
BsrFI	RCCGGY	1 cut(s)	426
BsrI	ACTGG	2 cut(s)	19, 687
BssAI	RCCGGY	1 cut(s)	426
BssECI	CCNNGG	2 cut(s)	24, 207
BssMI	GATC	3 cut(s)	124, 161, 620
BssT1I	CCWWGG	1 cut(s)	207
Bst4CI	ACNGT	2 cut(s)	449, 523
BstC8I	GCNNGC	2 cut(s)	113, 536
BstDEI	CTNAG	2 cut(s)	617, 668
BstDSI	CCRYGG	1 cut(s)	207
BstEII	GGTNACC	1 cut(s)	422
BstF5I	GGATG	1 cut(s)	474
BstH2I	RGCGCY	1 cut(s)	416
BstHHI	GCGC	1 cut(s)	415
BstKTI	GATC	3 cut(s)	127, 164, 623
BstMBI	GATC	3 cut(s)	124, 161, 620
BstMCI	CGRYCG	1 cut(s)	431
BstMWI	GCNNNNNNNGC	1 cut(s)	52
BstNSI	RCATGY	1 cut(s)	635
BstPI	GGTNACC	1 cut(s)	422
BstV2I	GAAGAC	1 cut(s)	144
BstX2I	RGATCY	3 cut(s)	124, 161, 620
BstYI	RGATCY	3 cut(s)	124, 161, 620
Bsu15I	ATCGAT	1 cut(s)	71
BsuRI	GGCC	2 cut(s)	88, 133
BsuTUI	ATCGAT	1 cut(s)	71
BtgI	CCRYGG	1 cut(s)	207
BtsCI	GGATG	1 cut(s)	474
BtsIMutI	CAGTG	2 cut(s)	454, 687
Cac8I	GCNNGC	2 cut(s)	113, 536
CciI	TCATGA	1 cut(s)	439
CfoI	GCGC	1 cut(s)	415
Cfr10I	RCCGGY	1 cut(s)	426
Cfr13I	GGNCC	1 cut(s)	131
ClaI	ATCGAT	1 cut(s)	71
CspAI	ACCGGT	1 cut(s)	426
CviAII	CATG	7 cut(s)	142, 208, 440, 584, 632, 644, 730
CviJI	RGCY	7 cut(s)	88, 115, 133, 219, 271, 362, 653
CviKI_1	RGCY	7 cut(s)	88, 115, 133, 219, 271, 362, 653
DdeI	CTNAG	2 cut(s)	617, 668
DpnI	GATC	3 cut(s)	126, 163, 622
DpnII	GATC	3 cut(s)	124, 161, 620
EciI	GGCGGA	1 cut(s)	33
Eco130I	CCWWGG	1 cut(s)	207
Eco57I	CTGAAG	2 cut(s)	156, 205
Eco91I	GGTNACC	1 cut(s)	422
EcoO65I	GGTNACC	1 cut(s)	422
EcoT14I	CCWWGG	1 cut(s)	207
ErhI	CCWWGG	1 cut(s)	207
FaeI	CATG	7 cut(s)	145, 211, 443, 587, 635, 647, 733
FatI	CATG	7 cut(s)	141, 207, 439, 583, 631, 643, 729
FauNDI	CATATG	1 cut(s)	700
FokI	GGATG	1 cut(s)	461
FspBI	CTAG	1 cut(s)	249
GlaI	GCGC	1 cut(s)	414
HaeII	RGCGCY	1 cut(s)	416
HaeIII	GGCC	2 cut(s)	88, 133
HapII	CCGG	1 cut(s)	427
HhaI	GCGC	1 cut(s)	415
Hin1II	CATG	7 cut(s)	145, 211, 443, 587, 635, 647, 733
Hin6I	GCGC	1 cut(s)	413
HinP1I	GCGC	1 cut(s)	413
HinfI	GANTC	2 cut(s)	179, 434
HpaII	CCGG	1 cut(s)	427
HphI	GGTGA	2 cut(s)	92, 434
Hpy166II	GTNNAC	1 cut(s)	178
Hpy188I	TCNGA	4 cut(s)	25, 224, 433, 640
Hpy188III	TCNNGA	1 cut(s)	440
Hpy8I	GTNNAC	1 cut(s)	178
HpyAV	CCTTC	5 cut(s)	219, 258, 281, 397, 667
HpyCH4III	ACNGT	2 cut(s)	449, 523
HpyCH4V	TGCA	2 cut(s)	534, 698
HpyF10VI	GCNNNNNNNGC	1 cut(s)	52
HpyF3I	CTNAG	2 cut(s)	617, 668
Hsp92II	CATG	7 cut(s)	145, 211, 443, 587, 635, 647, 733
HspAI	GCGC	1 cut(s)	413
Kzo9I	GATC	3 cut(s)	124, 161, 620
LpnPI	CCDG	7 cut(s)	32, 41, 147, 257, 411, 440, 700
LweI	GCATC	2 cut(s)	235, 483
MaeI	CTAG	1 cut(s)	249
MaeIII	GTNAC	3 cut(s)	422, 658, 682
MalI	GATC	3 cut(s)	126, 163, 622
MbiI	CCGCTC	2 cut(s)	480, 557
MboI	GATC	3 cut(s)	124, 161, 620
MboII	GAAGA	4 cut(s)	20, 47, 134, 149
MfeI	CAATTG	1 cut(s)	596
MflI	RGATCY	3 cut(s)	124, 161, 620
MluCI	AATT	8 cut(s)	38, 91, 489, 502, 563, 596, 602, 608
MlyI	GAGTC	1 cut(s)	173
MmeI	TCCRAC	2 cut(s)	216, 411
MnlI	CCTC	3 cut(s)	19, 373, 491
MroXI	GAANNNNTTC	2 cut(s)	39, 611
MseI	TTAA	1 cut(s)	105
MslI	CAYNNNNRTG	1 cut(s)	582
MspI	CCGG	1 cut(s)	427
MunI	CAATTG	1 cut(s)	596
Mva1269I	GAATGC	1 cut(s)	393
MwoI	GCNNNNNNNGC	1 cut(s)	52
NcoI	CCATGG	1 cut(s)	207
NdeI	CATATG	1 cut(s)	700
NdeII	GATC	3 cut(s)	124, 161, 620
NlaIII	CATG	7 cut(s)	145, 211, 443, 587, 635, 647, 733
NlaIV	GGNNCC	1 cut(s)	163
NmuCI	GTSAC	3 cut(s)	422, 658, 682
NspI	RCATGY	1 cut(s)	635
PagI	TCATGA	1 cut(s)	439
PciI	ACATGT	1 cut(s)	631
PctI	GAATGC	1 cut(s)	393
PdmI	GAANNNNTTC	2 cut(s)	39, 611
PfeI	GAWTC	1 cut(s)	434
PflMI	CCANNNNNTGG	2 cut(s)	389, 649
PinAI	ACCGGT	1 cut(s)	426
PleI	GAGTC	1 cut(s)	173
PpsI	GAGTC	1 cut(s)	173
PscI	ACATGT	1 cut(s)	631
PsiI	TTATAA	1 cut(s)	569
PspEI	GGTNACC	1 cut(s)	422
PspN4I	GGNNCC	1 cut(s)	163
PspPI	GGNCC	1 cut(s)	131
PsuI	RGATCY	3 cut(s)	124, 161, 620
RseI	CAYNNNNRTG	1 cut(s)	582
SaqAI	TTAA	1 cut(s)	105
Sau3AI	GATC	3 cut(s)	124, 161, 620
Sau96I	GGNCC	1 cut(s)	131
SchI	GAGTC	1 cut(s)	173
SetI	ASST	4 cut(s)	151, 221, 273, 678
SfaNI	GCATC	2 cut(s)	235, 483
SmiMI	CAYNNNNRTG	1 cut(s)	582
SmlI	CTYRAG	1 cut(s)	654
SmoI	CTYRAG	1 cut(s)	654
Sse9I	AATT	8 cut(s)	38, 91, 489, 502, 563, 596, 602, 608
SsiI	CCGC	3 cut(s)	44, 478, 557
SspMI	CTAG	1 cut(s)	249
StyI	CCWWGG	1 cut(s)	207
TaaI	ACNGT	2 cut(s)	449, 523
TaqI	TCGA	3 cut(s)	71, 365, 553
TasI	AATT	8 cut(s)	38, 91, 489, 502, 563, 596, 602, 608
TfiI	GAWTC	1 cut(s)	434
Tru1I	TTAA	1 cut(s)	105
Tru9I	TTAA	1 cut(s)	105
TscAI	CASTG	2 cut(s)	454, 687
TseFI	GTSAC	3 cut(s)	422, 658, 682
Tsp45I	GTSAC	3 cut(s)	422, 658, 682
TspDTI	ATGAA	6 cut(s)	27, 135, 180, 186, 339, 704
TspGWI	ACGGA	2 cut(s)	154, 515
TspRI	CASTG	2 cut(s)	454, 687
Van91I	CCANNNNNTGG	2 cut(s)	389, 649
XapI	RAATTY	2 cut(s)	38, 563
XceI	RCATGY	1 cut(s)	635
XmnI	GAANNNNTTC	2 cut(s)	39, 611
XspI	CTAG	1 cut(s)	249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.