Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0013401

Physical Location & Seq

Genomic Coordinates Forward (+)

41719765 .. 41733005

Gene Structure 13241 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00316800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2574 bp

ATGGAATCAAGGCCGAGGCCAAGCTCCGGCCGATCAACGCCGCTCCGGGACTCCAATGACTCCGACAAGATGGAGGCCACTGGTCTCTGGGACGCCCTCGAATGGACCTTTGAGCCGGTCTCACGCTCCGTTTCACGCGCCGTTTCGCATTTGAGGTTGGATTGCTTGCTTGAAGGTGAGCAAGTTGAAGTTGAGGGATCTGGCGTTGTTCTTATTAATACTGACGAGGCAGGTACCTTGGTAGTCACCAATTTTCGGCTTCTTTTTCTGAGTGAGGACACTAGGAATGTTATTCCGCTTGGCACAATACCTTTGGCAACAATTGAGAAGTTCAACAAAATGGTTGTAAAGAATCAATCAACCCCTCGTCAATCTGACAAAACTCCATCAAGAAGATTGCTTCAGGTCATTGGCAAAGACATGAGGATAATAGTCTTTGGGTTTCGCCCTAAAACAAGGCAGAGACATGAAGTGTTTGATGCATTAGTAAAGTGTACAAAGCCAGCGAGCCTATGGGATCTGTATGCTTTTGTTTCTGGACCTTCCAAATATAGTAACACTAATCCAAAGGTGCGGTTACTAAATGAGTATTTTCGGCTTCTTGGAAAAGGCTCCCGTGCGTCTATGAATATGATTGAAGATGGGTCATTCACTTTGTCAAATGATTTCTGGAGAATAAGTAGTGTAAATTCTAGCTATTCGTTGTGCCAGACTTATCCATTTGCGTTGATAATTCCGAAATCCATTACTGATGAAGAAGTGCTCCAAGCTTCCACCTTCCGTGCAAGAAGTCGGTTGCCTGTAGTTACATGGTGTCATCCAAGAACAGGAGCAGTTCTGGCACGTTCATCCCAACCCTTAGTTGGTATCATGATGAATATGAGGAGCAACACAGATGAAAAGCTCGTTGCTGCCCTTTGCTCTGAACTTGCTGGTAGTGGTGGTAAAAGAAGGAAGCTCTATATAGCTGATGCAAGACCACGAAAAAATGCTTTAGCTAATGGTGCAATGGGAGGTGGTTCTGAGTCATCTTCAAATTACTTTCAGTCTGAGATTGTTTTCTTTGGGATAGACAACATCCATGCGATGAGAGATAGTTTTGCTCGGCTCAGAGATTACTTAGATACTCATGGTACAGCTTCATCGGATGGAATGTCATCTTTCTTGAGGGATGGTGGTTGGAGTTGGGGTGGTGGCAACCTTAGCAGTATGTCTGCTTCAGTGTCAACTCTTGGAGACAGTGGTTGGTTTAAACATGTTCAAAGTGTGTTGGCTGGTTCTGCTTGGATTGCTGCACGCATTGCTCTGGAATCGGCATCGGTGCTTGTACATTGCAGTGATGGATGGGATAGAACTACTCAGCTGGTTTCGCTTGCCATTTTGTTGCTTGATCCATACTATCGGACTTTAAATGGGTTCCAGGCACTCGTTGAGAAAGATTGGCTAGCATTTGGTCACCCATTTGCAGATCGAGTTGGCATGCCAACTGTAACAGGTAGTACAAGCATACCTTCTGAGTTACCAAGGCAGTCTTCTACCGGGAGTATCCAATCATCACCCAATCGCCAGTCAGGAGCATCCTTCACATCTCAAGCTCCTACATCTCATGCACAGACTTCAAACAACTATTCTCCTATATTTTTGCAGTGGGTAGATTGTGTTTCACAGCTATTGCGGATGTATCCTTTTGCTTTTGAGTTCTCTTCGGTTTTCCTGGTGGATCTATTGGATTGTGTTCTGTCTTGCCGCTTTGGAAACTTCTTTTATAATAGTGAAAAGGAGAGGCAGCAGTGTGGGGTACCCGAAGCTTGTGGATGCATGTGGGCGTATTTGGCCGATTTGCGCTCTTTAGATGGAAATTCTCATGTGCACTATAATTATTTCTATGATCCACTGAAACACAATGGTCCACTATTACCTCCAGCAGCCGCTTTAGCACCAACTTTATGGCCACAATTCCATTTGCGATGGGCTTGTCCCTCTGAGGCTCAAGCTGGAGAGCTCGAAGCTGAATTTAGGAAGATGGATGTTAAATTTGCGGAACTGCAGAAGGCAAAGGAAGTGGCAGAAAGGAAAGCTAAAGAAATCACTACTCTCATGGAAACCTTTAGTGCAGATGTGAGACATGAAAAGCAAGTCAGCAGCTCGGCTATGAAGTTGGTCAAGAGGGCAAACAAGGAAAGTGAGGCCATGAAGCGAGCTATACAGTCACTGGGGTGCAAGGTACATTTTTCAAGTACTGGAGATTGCACTGTTGACATCGAAAGTAGTGTAATTGAAGGTCCACAAAAATTAGTTTGTTCTTCTTCGAAAAGACAAGCAGATGGCACACTGCAGAATGATGAGAAATCAGACCTGTCTGTTTCCATTACAGTTATGGCAGATGATGTTGATGGCAGCAATCCAATTGGTCGAGTTTGTGAAACTTTATGCCCATTACGCATGCGAGATGGAGGCTGCAGGTGGCCAGATGCTGGCTGTGCTCAATTGGGCAGCCAATTTGTTGGACTGAAGGCCAACTTTGAGGCATTTGATCAACTTTCAATCTACGATAGTTATTTCCAGCCTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004438 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009987 GO:0009991 GO:0010035 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0023052 GO:0030258 GO:0031410 GO:0031668 GO:0031982 GO:0033554 GO:0034593 GO:0035556 GO:0042221 GO:0042578 GO:0042631 GO:0043226 GO:0043227 GO:0043229 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046486 GO:0046488 GO:0046839 GO:0046856 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0052629 GO:0052744 GO:0052866 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0071704 GO:0080134 GO:0097708 GO:0104004 GO:0106018 GO:1901700 GO:1901701 GO:2000070

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Myotub-related

Protein Analysis

857

Amino Acids

94.77

Weight (kDa)

7.48

Isoelectric Point (pI)

51.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myotub-related	PF06602	210 - 596	1.1e-124	Myotubularin-like phosphatase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0013401)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10550 AT5G04540
fragaria_vesca	FvH4_7g06400
malus_domestica	MD02G1244600.v1.1 MD07G1072600.v1.1
prunus_persica	Prupe.2G090700_v2.0.a1 Prupe.2G090700_v2.0.a1
pyrus_communis	pycom02g21050 pycom07g05570
rosa_chinensis	RchiOBHm_Chr1g0334491
rosa_laevigata	RLG00000029449
rosa_roxburghii	Rroxscaffold_4G00316800
rosa_rugosa	Rorug01G0114300
rosa_samantha	Rh1AG139500 Rh1BG105700 Rh1CG131400 Rh1DG143400
rosa_wichuraiana	Rw1G011500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1767
AarI	CACCTGC	1 cut(s)	2451
Acc36I	ACCTGC	2 cut(s)	221, 2451
Acc65I	GGTACC	2 cut(s)	233, 1798
AccB1I	GGYRCC	2 cut(s)	233, 1798
AccB7I	CCANNNNNTGG	1 cut(s)	2474
AccBSI	CCGCTC	1 cut(s)	43
AccII	CGCG	1 cut(s)	138
AciI	CCGC	7 cut(s)	41, 296, 574, 1675, 1747, 1929, 2039
AclWI	GGATC	5 cut(s)	205, 525, 1385, 1728, 1883
AcoI	YGGCCR	4 cut(s)	28, 1833, 1949, 2465
AcsI	RAATTY	4 cut(s)	688, 1858, 2012, 2033
AcuI	CTGAAG	3 cut(s)	386, 1203, 2531
AcyI	GRCGYC	1 cut(s)	93
AfaI	GTAC	8 cut(s)	235, 496, 1135, 1329, 1501, 1800, 2226, 2239
AfiI	CCNNNNNNNGG	6 cut(s)	26, 102, 255, 827, 863, 2474
AflIII	ACRYGT	1 cut(s)	1255
AjnI	CCWGG	2 cut(s)	1419, 1713
AjuI	GAANNNNNNNTTGG	2 cut(s)	1516, 1548
AleI	CACNNNNGTG	1 cut(s)	2215
Alw21I	GWGCWC	4 cut(s)	765, 1872, 2004, 2485
Alw26I	GTCTC	5 cut(s)	89, 124, 457, 1230, 2116
Alw44I	GTGCAC	1 cut(s)	1868
AlwI	GGATC	5 cut(s)	205, 525, 1385, 1728, 1883
AlwNI	CAGNNNCTG	2 cut(s)	2212, 2474
AoxI	GGCC	9 cut(s)	11, 17, 28, 75, 1833, 1949, 2187, 2465, 2514
ApaLI	GTGCAC	1 cut(s)	1868
ApeKI	GCWGC	8 cut(s)	911, 1292, 1786, 1925, 2142, 2397, 2457, 2493
ApoI	RAATTY	4 cut(s)	688, 1858, 2012, 2033
AseI	ATTAAT	1 cut(s)	216
Asp718I	GGTACC	2 cut(s)	233, 1798
AspLEI	GCGC	2 cut(s)	140, 1845
AspS9I	GGNCC	4 cut(s)	105, 539, 1907, 2282
AsuC2I	CCSGG	2 cut(s)	47, 1540
AsuHPI	GGTGA	4 cut(s)	188, 238, 1448, 1548
AsuII	TTCGAA	1 cut(s)	2309
AsuNHI	GCTAGC	1 cut(s)	1444
AvaII	GGWCC	4 cut(s)	105, 539, 1907, 2282
BaeGI	GKGCMC	1 cut(s)	1872
BaeI	ACNNNNGTAYC	2 cut(s)	225, 258
BalI	TGGCCA	2 cut(s)	1951, 2467
BanI	GGYRCC	2 cut(s)	233, 1798
BanII	GRGCYC	1 cut(s)	2004
BarI	GAAGNNNNNNTAC	2 cut(s)	1201, 1233
BbsI	GAAGAC	1 cut(s)	1524
Bbv12I	GWGCWC	4 cut(s)	765, 1872, 2004, 2485
BbvI	GCAGC	8 cut(s)	898, 1279, 1798, 1937, 2154, 2409, 2444, 2505
BceAI	ACGGC	1 cut(s)	125
BciT130I	CCWGG	2 cut(s)	1421, 1715
BciVI	GTATCC	2 cut(s)	1556, 1692
BclI	TGATCA	1 cut(s)	2533
BcnI	CCSGG	2 cut(s)	47, 1540
BcoDI	GTCTC	5 cut(s)	89, 124, 457, 1230, 2116
BfaI	CTAG	3 cut(s)	282, 693, 1445
BfmI	CTRYAG	4 cut(s)	801, 2045, 2333, 2458
BfuAI	ACCTGC	2 cut(s)	221, 2451
BfuI	GTATCC	2 cut(s)	1556, 1692
BmcAI	AGTACT	1 cut(s)	2239
Bme1390I	CCNGG	4 cut(s)	47, 1421, 1540, 1715
Bme18I	GGWCC	4 cut(s)	105, 539, 1907, 2282
BmgT120I	GGNCC	4 cut(s)	105, 539, 1907, 2282
BmiI	GGNNCC	4 cut(s)	235, 613, 1418, 1800
BmrFI	CCNGG	4 cut(s)	47, 1421, 1540, 1715
BmrI	ACTGGG	1 cut(s)	2222
BmsI	GCATC	6 cut(s)	469, 961, 1325, 1586, 1805, 2461
BmtI	GCTAGC	1 cut(s)	1448
BmuI	ACTGGG	1 cut(s)	2222
BpiI	GAAGAC	1 cut(s)	1524
BplI	GAGNNNNNCTC	2 cut(s)	104, 136
BpmI	CTGGAG	4 cut(s)	691, 1905, 2016, 2262
Bpu10I	CCTNAGC	1 cut(s)	1202
Bpu14I	TTCGAA	1 cut(s)	2309
BpuEI	CTTGAG	3 cut(s)	1186, 1575, 1974
BpuMI	CCSGG	2 cut(s)	47, 1540
BsaHI	GRCGYC	1 cut(s)	93
BsaI	GGTCTC	2 cut(s)	89, 124
BsaJI	CCNNGG	3 cut(s)	14, 237, 1523
BsaXI	ACNNNNNCTCC	4 cut(s)	664, 694, 1174, 1204
Bsc4I	CCNNNNNNNGG	6 cut(s)	26, 102, 255, 827, 863, 2474
Bse118I	RCCGGY	1 cut(s)	115
Bse1I	ACTGG	4 cut(s)	85, 1567, 2217, 2245
Bse3DI	GCAATG	3 cut(s)	1014, 1299, 1330
BseBI	CCWGG	2 cut(s)	1421, 1715
BseDI	CCNNGG	3 cut(s)	14, 237, 1523
BseLI	CCNNNNNNNGG	6 cut(s)	26, 102, 255, 827, 863, 2474
BseMI	GCAATG	3 cut(s)	1014, 1299, 1330
BseMII	CTCAG	7 cut(s)	260, 1014, 1041, 1123, 1373, 1506, 1974
BseNI	ACTGG	4 cut(s)	85, 1567, 2217, 2245
BseRI	GAGGAG	1 cut(s)	898
BseSI	GKGCMC	1 cut(s)	1872
BseX3I	CGGCCG	1 cut(s)	28
BseXI	GCAGC	8 cut(s)	898, 1279, 1798, 1937, 2154, 2409, 2444, 2505
BsgI	GTGCAG	2 cut(s)	1278, 2133
Bsh1236I	CGCG	1 cut(s)	138
Bsh1285I	CGRYCG	1 cut(s)	31
BshFI	GGCC	9 cut(s)	13, 19, 30, 77, 1835, 1951, 2189, 2467, 2516
BshNI	GGYRCC	2 cut(s)	233, 1798
BsiEI	CGRYCG	1 cut(s)	31
BsiHKAI	GWGCWC	4 cut(s)	765, 1872, 2004, 2485
BsiSI	CCGG	4 cut(s)	27, 46, 116, 1539
BslFI	GGGAC	3 cut(s)	62, 104, 1962
BslI	CCNNNNNNNGG	6 cut(s)	26, 102, 255, 827, 863, 2474
BsmAI	GTCTC	5 cut(s)	89, 124, 457, 1230, 2116
BsmFI	GGGAC	3 cut(s)	62, 104, 1962
BsnI	GGCC	9 cut(s)	13, 19, 30, 77, 1835, 1951, 2189, 2467, 2516
Bso31I	GGTCTC	2 cut(s)	89, 124
Bsp119I	TTCGAA	1 cut(s)	2309
Bsp1286I	GDGCHC	4 cut(s)	765, 1872, 2004, 2485
Bsp1407I	TGTACA	2 cut(s)	494, 1327
Bsp143I	GATC	8 cut(s)	32, 197, 517, 1390, 1468, 1720, 1888, 2533
BspACI	CCGC	7 cut(s)	41, 296, 574, 1675, 1747, 1929, 2039
BspANI	GGCC	9 cut(s)	13, 19, 30, 77, 1835, 1951, 2189, 2467, 2516
BspCNI	CTCAG	7 cut(s)	261, 1015, 1042, 1122, 1372, 1507, 1975
BspFNI	CGCG	1 cut(s)	138
BspHI	TCATGA	1 cut(s)	870
BspLI	GGNNCC	4 cut(s)	235, 613, 1418, 1800
BspMAI	CTGCAG	3 cut(s)	2049, 2337, 2462
BspMI	ACCTGC	2 cut(s)	221, 2451
BspOI	GCTAGC	1 cut(s)	1448
BspPI	GGATC	5 cut(s)	205, 525, 1385, 1728, 1883
BspT104I	TTCGAA	1 cut(s)	2309
BspT107I	GGYRCC	2 cut(s)	233, 1798
BspTNI	GGTCTC	2 cut(s)	89, 124
BsrBI	CCGCTC	1 cut(s)	43
BsrDI	GCAATG	3 cut(s)	1014, 1299, 1330
BsrFI	RCCGGY	1 cut(s)	115
BsrGI	TGTACA	2 cut(s)	494, 1327
BsrI	ACTGG	4 cut(s)	85, 1567, 2217, 2245
BssAI	RCCGGY	1 cut(s)	115
BssECI	CCNNGG	3 cut(s)	14, 237, 1523
BssMI	GATC	8 cut(s)	32, 197, 517, 1390, 1468, 1720, 1888, 2533
BssNI	GRCGYC	1 cut(s)	93
BssT1I	CCWWGG	2 cut(s)	237, 1523
Bst2UI	CCWGG	2 cut(s)	1421, 1715
Bst4CI	ACNGT	5 cut(s)	1241, 1489, 2208, 2254, 2374
Bst6I	CTCTTC	1 cut(s)	1708
BstACI	GRCGYC	1 cut(s)	93
BstAPI	GCANNNNNTGC	1 cut(s)	1301
BstAUI	TGTACA	2 cut(s)	494, 1327
BstBI	TTCGAA	1 cut(s)	2309
BstEII	GGTNACC	1 cut(s)	1454
BstFNI	CGCG	1 cut(s)	138
BstHHI	GCGC	2 cut(s)	140, 1845
BstKTI	GATC	8 cut(s)	35, 200, 520, 1393, 1471, 1723, 1891, 2536
BstMAI	GTCTC	5 cut(s)	89, 124, 457, 1230, 2116
BstMBI	GATC	8 cut(s)	32, 197, 517, 1390, 1468, 1720, 1888, 2533
BstMCI	CGRYCG	1 cut(s)	31
BstNI	CCWGG	2 cut(s)	1421, 1715
BstNSI	RCATGY	4 cut(s)	1259, 1483, 1822, 2446
BstPI	GGTNACC	1 cut(s)	1454
BstSCI	CCNGG	4 cut(s)	45, 1419, 1538, 1713
BstSFI	CTRYAG	4 cut(s)	801, 2045, 2333, 2458
BstSLI	GKGCMC	1 cut(s)	1872
BstUI	CGCG	1 cut(s)	138
BstV1I	GCAGC	8 cut(s)	898, 1279, 1798, 1937, 2154, 2409, 2444, 2505
BstV2I	GAAGAC	1 cut(s)	1524
BstX2I	RGATCY	3 cut(s)	197, 517, 1720
BstXI	CCANNNNNNTGG	2 cut(s)	1947, 2504
BstYI	RGATCY	3 cut(s)	197, 517, 1720
BstZI	CGGCCG	1 cut(s)	28
BsuI	GTATCC	2 cut(s)	1556, 1692
BsuRI	GGCC	9 cut(s)	13, 19, 30, 77, 1835, 1951, 2189, 2467, 2516
BtgZI	GCGATG	2 cut(s)	1100, 1981
BtsI	GCAGTG	4 cut(s)	1342, 1652, 1796, 2330
BveI	ACCTGC	2 cut(s)	221, 2451
CaiI	CAGNNNCTG	2 cut(s)	2212, 2474
CciI	TCATGA	1 cut(s)	870
CfoI	GCGC	2 cut(s)	140, 1845
Cfr10I	RCCGGY	1 cut(s)	115
Cfr13I	GGNCC	4 cut(s)	105, 539, 1907, 2282
CseI	GACGC	2 cut(s)	101, 609
Csp6I	GTAC	8 cut(s)	234, 495, 1134, 1328, 1500, 1799, 2225, 2238
CspCI	CAANNNNNGTGG	2 cut(s)	2043, 2078
CviQI	GTAC	8 cut(s)	234, 495, 1134, 1328, 1500, 1799, 2225, 2238
DpnI	GATC	8 cut(s)	34, 199, 519, 1392, 1470, 1722, 1890, 2535
DpnII	GATC	8 cut(s)	32, 197, 517, 1390, 1468, 1720, 1888, 2533
DraI	TTTAAA	2 cut(s)	1252, 1410
EaeI	YGGCCR	4 cut(s)	28, 1833, 1949, 2465
EagI	CGGCCG	1 cut(s)	28
Eam1104I	CTCTTC	1 cut(s)	1708
EarI	CTCTTC	1 cut(s)	1708
Ecl136II	GAGCTC	1 cut(s)	2002
EclXI	CGGCCG	1 cut(s)	28
Eco130I	CCWWGG	2 cut(s)	237, 1523
Eco24I	GRGCYC	1 cut(s)	2004
Eco31I	GGTCTC	2 cut(s)	89, 124
Eco47I	GGWCC	4 cut(s)	105, 539, 1907, 2282
Eco52I	CGGCCG	1 cut(s)	28
Eco53kI	GAGCTC	1 cut(s)	2002
Eco57I	CTGAAG	3 cut(s)	386, 1203, 2531
Eco91I	GGTNACC	1 cut(s)	1454
EcoICRI	GAGCTC	1 cut(s)	2002
EcoO65I	GGTNACC	1 cut(s)	1454
EcoRII	CCWGG	2 cut(s)	1419, 1713
EcoT14I	CCWWGG	2 cut(s)	237, 1523
EcoT22I	ATGCAT	2 cut(s)	484, 1820
EcoT38I	GRGCYC	1 cut(s)	2004
ErhI	CCWWGG	2 cut(s)	237, 1523
FalI	AAGNNNNNCTT	6 cut(s)	1495, 1527, 1516, 1548, 2504, 2536
FaqI	GGGAC	3 cut(s)	62, 104, 1962
FbaI	TGATCA	1 cut(s)	2533
FriOI	GRGCYC	1 cut(s)	2004
FspBI	CTAG	3 cut(s)	282, 693, 1445
GlaI	GCGC	2 cut(s)	139, 1844
GsuI	CTGGAG	4 cut(s)	691, 1905, 2016, 2262
HaeIII	GGCC	9 cut(s)	13, 19, 30, 77, 1835, 1951, 2189, 2467, 2516
HapII	CCGG	4 cut(s)	27, 46, 116, 1539
HgaI	GACGC	2 cut(s)	101, 609
HhaI	GCGC	2 cut(s)	140, 1845
Hin1I	GRCGYC	1 cut(s)	93
Hin6I	GCGC	2 cut(s)	138, 1843
HinP1I	GCGC	2 cut(s)	138, 1843
HincII	GTYRAC	2 cut(s)	1227, 2257
HindII	GTYRAC	2 cut(s)	1227, 2257
HindIII	AAGCTT	2 cut(s)	768, 1806
HinfI	GANTC	6 cut(s)	5, 50, 59, 352, 1025, 1310
HpaII	CCGG	4 cut(s)	27, 46, 116, 1539
HphI	GGTGA	4 cut(s)	188, 238, 1448, 1548
Hpy166II	GTNNAC	6 cut(s)	495, 1227, 1870, 1910, 2257, 2285
Hpy188III	TCNNGA	8 cut(s)	390, 537, 670, 871, 1165, 1307, 1572, 2164
Hpy8I	GTNNAC	6 cut(s)	495, 1227, 1870, 1910, 2257, 2285
HpyAV	CCTTC	9 cut(s)	167, 552, 787, 945, 1521, 1591, 2044, 2273, 2506
HpyCH4III	ACNGT	5 cut(s)	1241, 1489, 2208, 2254, 2374
HpyCH4IV	ACGT	1 cut(s)	844
HpySE526I	ACGT	1 cut(s)	844
Hsp92I	GRCGYC	1 cut(s)	93
HspAI	GCGC	2 cut(s)	138, 1843
KpnI	GGTACC	2 cut(s)	237, 1802
Ksp22I	TGATCA	1 cut(s)	2533
Kzo9I	GATC	8 cut(s)	32, 197, 517, 1390, 1468, 1720, 1888, 2533
LmnI	GCTCC	9 cut(s)	29, 48, 131, 617, 768, 830, 885, 1574, 1600
Lsp1109I	GCAGC	8 cut(s)	898, 1279, 1798, 1937, 2154, 2409, 2444, 2505
LweI	GCATC	6 cut(s)	469, 961, 1325, 1586, 1805, 2461
MaeI	CTAG	3 cut(s)	282, 693, 1445
MaeII	ACGT	1 cut(s)	844
MaeIII	GTNAC	8 cut(s)	244, 554, 576, 805, 1454, 1489, 1518, 2208
MalI	GATC	8 cut(s)	34, 199, 519, 1392, 1470, 1722, 1890, 2535
MbiI	CCGCTC	1 cut(s)	43
MboI	GATC	8 cut(s)	32, 197, 517, 1390, 1468, 1720, 1888, 2533
MboII	GAAGA	9 cut(s)	405, 650, 767, 1023, 1524, 1695, 2032, 2295, 2298
MfeI	CAATTG	3 cut(s)	321, 2406, 2486
MflI	RGATCY	3 cut(s)	197, 517, 1720
MhlI	GDGCHC	4 cut(s)	765, 1872, 2004, 2485
MlsI	TGGCCA	2 cut(s)	1951, 2467
MluNI	TGGCCA	2 cut(s)	1951, 2467
MlyI	GAGTC	3 cut(s)	44, 53, 1034
MmeI	TCCRAC	4 cut(s)	87, 138, 1160, 2485
Mox20I	TGGCCA	2 cut(s)	1951, 2467
Mph1103I	ATGCAT	2 cut(s)	484, 1820
MscI	TGGCCA	2 cut(s)	1951, 2467
MseI	TTAA	4 cut(s)	216, 1251, 1409, 2031
MslI	CAYNNNNRTG	2 cut(s)	1335, 2215
Msp20I	TGGCCA	2 cut(s)	1951, 2467
MspA1I	CMGCKG	1 cut(s)	1363
MspI	CCGG	4 cut(s)	27, 46, 116, 1539
MspR9I	CCNGG	4 cut(s)	47, 1421, 1540, 1715
MssI	GTTTAAAC	1 cut(s)	1252
MunI	CAATTG	3 cut(s)	321, 2406, 2486
MvaI	CCWGG	2 cut(s)	1421, 1715
MvnI	CGCG	1 cut(s)	138
NciI	CCSGG	2 cut(s)	47, 1540
NdeII	GATC	8 cut(s)	32, 197, 517, 1390, 1468, 1720, 1888, 2533
NheI	GCTAGC	1 cut(s)	1444
NlaIV	GGNNCC	4 cut(s)	235, 613, 1418, 1800
NmeAIII	GCCGAG	3 cut(s)	39, 1084, 2126
NmuCI	GTSAC	3 cut(s)	244, 1454, 2208
NsiI	ATGCAT	2 cut(s)	484, 1820
NspI	RCATGY	4 cut(s)	1259, 1483, 1822, 2446
NspV	TTCGAA	1 cut(s)	2309
OliI	CACNNNNGTG	1 cut(s)	2215
PaeI	GCATGC	2 cut(s)	1483, 2446
PagI	TCATGA	1 cut(s)	870
PaqCI	CACCTGC	1 cut(s)	2451
PciI	ACATGT	1 cut(s)	1255
PfeI	GAWTC	3 cut(s)	5, 352, 1310
PflMI	CCANNNNNTGG	1 cut(s)	2474
PfoI	TCCNGGA	1 cut(s)	45
PleI	GAGTC	3 cut(s)	44, 53, 1033
PmeI	GTTTAAAC	1 cut(s)	1252
PpsI	GAGTC	3 cut(s)	44, 53, 1033
PscI	ACATGT	1 cut(s)	1255
PshBI	ATTAAT	1 cut(s)	216
PsiI	TTATAA	1 cut(s)	1767
Psp124BI	GAGCTC	1 cut(s)	2004
Psp6I	CCWGG	2 cut(s)	1419, 1713
PspEI	GGTNACC	1 cut(s)	1454
PspGI	CCWGG	2 cut(s)	1419, 1713
PspN4I	GGNNCC	4 cut(s)	235, 613, 1418, 1800
PspPI	GGNCC	4 cut(s)	105, 539, 1907, 2282
PstI	CTGCAG	3 cut(s)	2049, 2337, 2462
PstNI	CAGNNNCTG	2 cut(s)	2212, 2474
PsuI	RGATCY	3 cut(s)	197, 517, 1720
PvuII	CAGCTG	1 cut(s)	1363
RsaI	GTAC	8 cut(s)	235, 496, 1135, 1329, 1501, 1800, 2226, 2239
RsaNI	GTAC	8 cut(s)	234, 495, 1134, 1328, 1500, 1799, 2225, 2238
RseI	CAYNNNNRTG	2 cut(s)	1335, 2215
SacI	GAGCTC	1 cut(s)	2004
SaqAI	TTAA	4 cut(s)	216, 1251, 1409, 2031
Sau3AI	GATC	8 cut(s)	32, 197, 517, 1390, 1468, 1720, 1888, 2533
Sau96I	GGNCC	4 cut(s)	105, 539, 1907, 2282
ScaI	AGTACT	1 cut(s)	2239
SchI	GAGTC	3 cut(s)	44, 53, 1034
ScrFI	CCNGG	4 cut(s)	47, 1421, 1540, 1715
SduI	GDGCHC	4 cut(s)	765, 1872, 2004, 2485
SfaNI	GCATC	6 cut(s)	469, 961, 1325, 1586, 1805, 2461
SfcI	CTRYAG	4 cut(s)	801, 2045, 2333, 2458
SfuI	TTCGAA	1 cut(s)	2309
SinI	GGWCC	4 cut(s)	105, 539, 1907, 2282
SmiMI	CAYNNNNRTG	2 cut(s)	1335, 2215
SmlI	CTYRAG	3 cut(s)	1165, 1590, 1989
SmoI	CTYRAG	3 cut(s)	1165, 1590, 1989
SphI	GCATGC	2 cut(s)	1483, 2446
SsiI	CCGC	7 cut(s)	41, 296, 574, 1675, 1747, 1929, 2039
SspMI	CTAG	3 cut(s)	282, 693, 1445
SstI	GAGCTC	1 cut(s)	2004
StyD4I	CCNGG	4 cut(s)	45, 1419, 1538, 1713
StyI	CCWWGG	2 cut(s)	237, 1523
TaaI	ACNGT	5 cut(s)	1241, 1489, 2208, 2254, 2374
TaiI	ACGT	1 cut(s)	847
TaqI	TCGA	6 cut(s)	99, 1471, 2004, 2262, 2309, 2413
TatI	WGTACW	4 cut(s)	494, 1327, 1499, 2237
TauI	GCSGC	3 cut(s)	43, 1749, 1931
TfiI	GAWTC	3 cut(s)	5, 352, 1310
Tru1I	TTAA	4 cut(s)	216, 1251, 1409, 2031
Tru9I	TTAA	4 cut(s)	216, 1251, 1409, 2031
TseFI	GTSAC	3 cut(s)	244, 1454, 2208
TseI	GCWGC	8 cut(s)	911, 1292, 1786, 1925, 2142, 2397, 2457, 2493
Tsp45I	GTSAC	3 cut(s)	244, 1454, 2208
TspGWI	ACGGA	2 cut(s)	118, 770
Van91I	CCANNNNNTGG	1 cut(s)	2474
VneI	GTGCAC	1 cut(s)	1868
VpaK11BI	GGWCC	4 cut(s)	105, 539, 1907, 2282
VspI	ATTAAT	1 cut(s)	216
XapI	RAATTY	4 cut(s)	688, 1858, 2012, 2033
XceI	RCATGY	4 cut(s)	1259, 1483, 1822, 2446
XcmI	CCANNNNNNNNNTGG	3 cut(s)	510, 860, 2374
XspI	CTAG	3 cut(s)	282, 693, 1445
ZrmI	AGTACT	1 cut(s)	2239
Zsp2I	ATGCAT	2 cut(s)	484, 1820

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.