Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0016972

Physical Location & Seq

Genomic Coordinates Reverse (-)

40259290 .. 40267126

Gene Structure 7837 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029555

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1608 bp

ATGTGCTATACAATTATTTTACTAGAGTTTAATCTGTACAAGATCCTAACTTTGTTTGAATTTGAAGTTAAAGATCGCGACTTTATCCTTGACAGGAGATCAATCAGGGAAATTTTGACAGTAAATACAATAGACTGTGGCACACTGGTCAAGTCTCTATCAGCATACATAACAACTGCAACTCGACCCACCTGGGCTCCTGCAAAAGATGGTAATGAACAAGGTAGTACTTGGATTTTCGTCCTATCCCAAAATCACTCATCAAGGGCAGCAGCTCAAGAGGAAGAAGGAGAGTACTCAATTCAATTGGGATTATATACAACATTAAAAGATCAGTTTATAGGCTCATATGTGTCTAGAAGGAAGGATGAGACTTGGCCCCTCAGTTCGATTCAGAGTTTTCATGCAAATCGAGAAGAAAGAGATCCAAGATTTCAGAACCAACCCATGTTTTCGAACGAAGTTTACAAAAGAGCTGACCAAAGGCAACTGGACAAAGACAGAAGATGTTCTGATCCTCACAGTGATACTGAAAGCTACTATTGCAGGCATCAATTCCTAGCTTTATCCATCGTTTCTGGCAATTTACAATTTTGCCATGTACCCTCAATATATAATCCAAAGTACCAAGTCTCTGCTTCTTTCGGGGAGCATCGGTCAAAGTCGACTTCGACTGCTGCACTGTTGCAGAAATCTGGCATCAACATCAATCGAGAAAGAGACTGGGTCTACCTTAATAGTAGCTTTCCAATTCGAGAAGCCTCCTCTACTGTTAAGCGATATCAGGCTTATCCATCACAATCAACATCACTGAAGACTGGGTTGGCTACATGTGATCTATCTGAGCTGCAAATTGAGGGTGATGGAAATTGCCAGTTTCGAGCAATAGCTGATCAGTTGTTTTGCAATCCAGATTACCATAAGCATGTTAGAAACCAGTTCATCATACCTCCTCTGATAACATATCTGATTCACATTTTCTACGAGTCTGATTCTCCGGTTGATTATCCAGGTGCATCCCTGGGTTCATTTGTACTCGTACTACTTGTTGCTGCAGTTTATCGTGTCTACAGTTCTGACAGGAAAGAAAAAGAGAATCAATTAAAGCTTGAAGGAAAACTTTCTGCTGAATGTTTTGTTGCGGTGAAAGTCCTCAATAATACCACGGGGAATGGGGAAGAGTTTGTAAATGAAGAAGGAACAACAGGACATATCCACCATGTCAATGTGGTTCGATTGGTTGGATTCTGCGCAGATGGATTTAGACGAGCTCTTGTGTATGACTTCTTACCTAATGGTTCACTACAAGATTTCTTATCATTAGCAGACAATAATAATTCTTTCCTGGGTTGGGGTAAGTTGCAAGTTATTTCTCTTGGAATAGCAAAAGGAATTGAATATCTGCACCAAGGATGCAATCAACGGATCCAACATTTTGATATCAAACCCCATAATGTTTTGCTAGACCATAACTTCAACGCAAAGATTTCTGATTTTGGTTTGGCCAAGTTATGTTCCAAGGATCAAACTATAGTGTCAATGACTACCGCCAGGGGAACGATGGGGTACATTGTACCTGAAGTGTTCTCCAGAACTTCGGAAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind Pkinase

Protein Analysis

536

Amino Acids

60.76

Weight (kDa)

6.47

Isoelectric Point (pI)

34.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	375 - 531	2.3e-24	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	376 - 531	3.9e-27	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016972)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0323591 RchiOBHm_Chr1g0333521 RchiOBHm_Chr3g0459541 RchiOBHm_Chr4g0410101 RchiOBHm_Chr4g0410181
rosa_laevigata	RLG00000029555
rosa_multiflora	Rmu_sc0004133.1_g000006
rosa_roxburghii	Rroxscaffold_7G00197180
rosa_rugosa	Rorug06G0282800 Rorug07G0294900
rosa_samantha	Rh4AG165500 Rh4AG182000 Rh4DG177600 Rh6CG075500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1252
AccI	GTMKAC	3 cut(s)	665, 729, 1068
AccII	CGCG	1 cut(s)	78
AciI	CCGC	2 cut(s)	1142, 1548
AclWI	GGATC	6 cut(s)	37, 419, 509, 1420, 1433, 1530
AcoI	YGGCCR	1 cut(s)	1503
AcsI	RAATTY	2 cut(s)	59, 111
AcuI	CTGAAG	2 cut(s)	833, 1599
AfaI	GTAC	9 cut(s)	38, 229, 296, 603, 626, 1035, 1041, 1568, 1575
AfiI	CCNNNNNNNGG	1 cut(s)	1351
AflIII	ACRYGT	1 cut(s)	830
AgsI	TTSAA	6 cut(s)	59, 65, 305, 1112, 1397, 1477
AjnI	CCWGG	5 cut(s)	191, 1009, 1020, 1344, 1550
AjuI	GAANNNNNNNTTGG	2 cut(s)	806, 838
AluBI	AGCT	9 cut(s)	275, 476, 537, 563, 744, 847, 890, 1108, 1271
AluI	AGCT	9 cut(s)	275, 476, 537, 563, 744, 847, 890, 1108, 1271
Alw21I	GWGCWC	1 cut(s)	1273
Alw26I	GTCTC	4 cut(s)	159, 365, 637, 714
AlwI	GGATC	6 cut(s)	37, 419, 509, 1420, 1433, 1530
AoxI	GGCC	2 cut(s)	377, 1503
ApeKI	GCWGC	5 cut(s)	269, 272, 677, 847, 1052
ApoI	RAATTY	2 cut(s)	59, 111
Asp700I	GAANNNNTTC	2 cut(s)	508, 1120
AspLEI	GCGC	1 cut(s)	1253
AspS9I	GGNCC	1 cut(s)	378
AsuHPI	GGTGA	2 cut(s)	872, 1156
AsuII	TTCGAA	1 cut(s)	455
BalI	TGGCCA	1 cut(s)	1505
BamHI	GGATCC	1 cut(s)	1425
BanII	GRGCYC	2 cut(s)	199, 1273
BbsI	GAAGAC	1 cut(s)	821
Bbv12I	GWGCWC	1 cut(s)	1273
BbvI	GCAGC	5 cut(s)	281, 284, 664, 834, 1039
BccI	CCATC	6 cut(s)	203, 578, 802, 857, 1250, 1555
BciT130I	CCWGG	5 cut(s)	193, 1011, 1022, 1346, 1552
BclI	TGATCA	1 cut(s)	892
BcoDI	GTCTC	4 cut(s)	159, 365, 637, 714
BfaI	CTAG	4 cut(s)	23, 357, 560, 1463
BfmI	CTRYAG	3 cut(s)	1053, 1069, 1530
BisI	GCNGC	5 cut(s)	270, 273, 678, 848, 1053
BlsI	GCNGC	5 cut(s)	271, 274, 679, 849, 1054
BmcAI	AGTACT	2 cut(s)	229, 296
Bme1390I	CCNGG	5 cut(s)	193, 1011, 1022, 1346, 1552
BmgT120I	GGNCC	1 cut(s)	378
BmiI	GGNNCC	3 cut(s)	198, 380, 1427
BmrFI	CCNGG	5 cut(s)	193, 1011, 1022, 1346, 1552
BmrI	ACTGGG	2 cut(s)	733, 828
BmsI	GCATC	5 cut(s)	559, 661, 708, 1025, 1403
BmuI	ACTGGG	2 cut(s)	733, 828
BpiI	GAAGAC	1 cut(s)	821
BpmI	CTGGAG	1 cut(s)	1573
Bpu14I	TTCGAA	1 cut(s)	455
BpuEI	CTTGAG	1 cut(s)	261
BsaJI	CCNNGG	8 cut(s)	192, 1020, 1021, 1164, 1345, 1408, 1518, 1551
BsaWI	WCCGGW	1 cut(s)	997
BsaXI	ACNNNNNCTCC	4 cut(s)	181, 211, 641, 671
Bsc4I	CCNNNNNNNGG	1 cut(s)	1351
Bse1I	ACTGG	6 cut(s)	150, 495, 728, 823, 874, 937
BseBI	CCWGG	5 cut(s)	193, 1011, 1022, 1346, 1552
BseDI	CCNNGG	8 cut(s)	192, 1020, 1021, 1164, 1345, 1408, 1518, 1551
BseGI	GGATG	3 cut(s)	373, 1016, 1418
BseLI	CCNNNNNNNGG	1 cut(s)	1351
BseMII	CTCAG	2 cut(s)	397, 834
BseNI	ACTGG	6 cut(s)	150, 495, 728, 823, 874, 937
BseRI	GAGGAG	2 cut(s)	754, 942
BseXI	GCAGC	5 cut(s)	281, 284, 664, 834, 1039
BsgI	GTGCAG	2 cut(s)	663, 1388
Bsh1236I	CGCG	1 cut(s)	78
BshFI	GGCC	2 cut(s)	379, 1505
BsiHKAI	GWGCWC	1 cut(s)	1273
BsiSI	CCGG	1 cut(s)	998
BslI	CCNNNNNNNGG	1 cut(s)	1351
BsmAI	GTCTC	4 cut(s)	159, 365, 637, 714
BsnI	GGCC	2 cut(s)	379, 1505
Bsp119I	TTCGAA	1 cut(s)	455
Bsp1286I	GDGCHC	2 cut(s)	199, 1273
Bsp1407I	TGTACA	1 cut(s)	36
Bsp68I	TCGCGA	1 cut(s)	78
BspACI	CCGC	2 cut(s)	1142, 1548
BspANI	GGCC	2 cut(s)	379, 1505
BspCNI	CTCAG	2 cut(s)	396, 835
BspFNI	CGCG	1 cut(s)	78
BspLI	GGNNCC	3 cut(s)	198, 380, 1427
BspMAI	CTGCAG	1 cut(s)	1057
BspPI	GGATC	6 cut(s)	37, 419, 509, 1420, 1433, 1530
BspT104I	TTCGAA	1 cut(s)	455
BsrGI	TGTACA	1 cut(s)	36
BsrI	ACTGG	6 cut(s)	150, 495, 728, 823, 874, 937
BssECI	CCNNGG	8 cut(s)	192, 1020, 1021, 1164, 1345, 1408, 1518, 1551
BssT1I	CCWWGG	2 cut(s)	1408, 1518
Bst2UI	CCWGG	5 cut(s)	193, 1011, 1022, 1346, 1552
Bst4CI	ACNGT	6 cut(s)	121, 137, 524, 684, 772, 1073
Bst6I	CTCTTC	1 cut(s)	1173
BstAUI	TGTACA	1 cut(s)	36
BstBI	TTCGAA	1 cut(s)	455
BstC8I	GCNNGC	1 cut(s)	548
BstDEI	CTNAG	2 cut(s)	383, 843
BstDSI	CCRYGG	1 cut(s)	1164
BstF5I	GGATG	3 cut(s)	373, 1016, 1418
BstFNI	CGCG	1 cut(s)	78
BstHHI	GCGC	1 cut(s)	1253
BstMAI	GTCTC	4 cut(s)	159, 365, 637, 714
BstMWI	GCNNNNNNNGC	1 cut(s)	543
BstNI	CCWGG	5 cut(s)	193, 1011, 1022, 1346, 1552
BstNSI	RCATGY	2 cut(s)	834, 929
BstSCI	CCNGG	5 cut(s)	191, 1009, 1020, 1344, 1550
BstSFI	CTRYAG	3 cut(s)	1053, 1069, 1530
BstUI	CGCG	1 cut(s)	78
BstV1I	GCAGC	5 cut(s)	281, 284, 664, 834, 1039
BstV2I	GAAGAC	1 cut(s)	821
BstX2I	RGATCY	3 cut(s)	42, 424, 1425
BstYI	RGATCY	3 cut(s)	42, 424, 1425
BsuRI	GGCC	2 cut(s)	379, 1505
BtgI	CCRYGG	1 cut(s)	1164
BtsCI	GGATG	3 cut(s)	373, 1016, 1418
BtsIMutI	CAGTG	4 cut(s)	143, 529, 680, 809
BtuMI	TCGCGA	1 cut(s)	78
Cac8I	GCNNGC	1 cut(s)	548
CfoI	GCGC	1 cut(s)	1253
Cfr13I	GGNCC	1 cut(s)	378
Csp6I	GTAC	9 cut(s)	37, 228, 295, 602, 625, 1034, 1040, 1567, 1574
CviAII	CATG	6 cut(s)	404, 448, 599, 831, 926, 1220
CviQI	GTAC	9 cut(s)	37, 228, 295, 602, 625, 1034, 1040, 1567, 1574
DdeI	CTNAG	2 cut(s)	383, 843
EaeI	YGGCCR	1 cut(s)	1503
Eam1104I	CTCTTC	1 cut(s)	1173
EarI	CTCTTC	1 cut(s)	1173
Ecl136II	GAGCTC	1 cut(s)	1271
Eco130I	CCWWGG	2 cut(s)	1408, 1518
Eco24I	GRGCYC	2 cut(s)	199, 1273
Eco32I	GATATC	2 cut(s)	782, 1441
Eco53kI	GAGCTC	1 cut(s)	1271
Eco57I	CTGAAG	2 cut(s)	833, 1599
EcoICRI	GAGCTC	1 cut(s)	1271
EcoRII	CCWGG	5 cut(s)	191, 1009, 1020, 1344, 1550
EcoRV	GATATC	2 cut(s)	782, 1441
EcoT14I	CCWWGG	2 cut(s)	1408, 1518
EcoT38I	GRGCYC	2 cut(s)	199, 1273
ErhI	CCWWGG	2 cut(s)	1408, 1518
FaeI	CATG	6 cut(s)	407, 451, 602, 834, 929, 1223
FalI	AAGNNNNNCTT	2 cut(s)	1104, 1136
FatI	CATG	6 cut(s)	403, 447, 598, 830, 925, 1219
FauNDI	CATATG	1 cut(s)	349
FbaI	TGATCA	1 cut(s)	892
FblI	GTMKAC	3 cut(s)	665, 729, 1068
Fnu4HI	GCNGC	5 cut(s)	270, 273, 678, 848, 1053
FokI	GGATG	3 cut(s)	380, 1003, 1425
FriOI	GRGCYC	2 cut(s)	199, 1273
Fsp4HI	GCNGC	5 cut(s)	270, 273, 678, 848, 1053
FspBI	CTAG	4 cut(s)	23, 357, 560, 1463
FspI	TGCGCA	1 cut(s)	1252
GlaI	GCGC	1 cut(s)	1252
GluI	GCNGC	5 cut(s)	270, 273, 678, 848, 1053
GsuI	CTGGAG	1 cut(s)	1573
HaeIII	GGCC	2 cut(s)	379, 1505
HapII	CCGG	1 cut(s)	998
HhaI	GCGC	1 cut(s)	1253
Hin1II	CATG	6 cut(s)	407, 451, 602, 834, 929, 1223
Hin6I	GCGC	1 cut(s)	1251
HinP1I	GCGC	1 cut(s)	1251
HincII	GTYRAC	1 cut(s)	666
HindII	GTYRAC	1 cut(s)	666
HindIII	AAGCTT	1 cut(s)	1106
HinfI	GANTC	6 cut(s)	391, 970, 986, 992, 1096, 1245
HpaII	CCGG	1 cut(s)	998
HphI	GGTGA	2 cut(s)	872, 1156
Hpy166II	GTNNAC	5 cut(s)	466, 666, 730, 1069, 1301
Hpy188III	TCNNGA	8 cut(s)	77, 278, 357, 413, 713, 755, 911, 1590
Hpy8I	GTNNAC	5 cut(s)	466, 666, 730, 1069, 1301
HpyAV	CCTTC	5 cut(s)	281, 354, 358, 1106, 1190
HpyCH4III	ACNGT	6 cut(s)	121, 137, 524, 684, 772, 1073
HpyF10VI	GCNNNNNNNGC	1 cut(s)	543
HpyF3I	CTNAG	2 cut(s)	383, 843
Hsp92II	CATG	6 cut(s)	407, 451, 602, 834, 929, 1223
HspAI	GCGC	1 cut(s)	1251
Ksp22I	TGATCA	1 cut(s)	892
LmnI	GCTCC	2 cut(s)	202, 649
Lsp1109I	GCAGC	5 cut(s)	281, 284, 664, 834, 1039
LweI	GCATC	5 cut(s)	559, 661, 708, 1025, 1403
MaeI	CTAG	4 cut(s)	23, 357, 560, 1463
MboII	GAAGA	6 cut(s)	296, 428, 516, 826, 1190, 1205
MfeI	CAATTG	1 cut(s)	305
MflI	RGATCY	3 cut(s)	42, 424, 1425
MhlI	GDGCHC	2 cut(s)	199, 1273
MlsI	TGGCCA	1 cut(s)	1505
MluNI	TGGCCA	1 cut(s)	1505
MlyI	GAGTC	1 cut(s)	995
MmeI	TCCRAC	2 cut(s)	1222, 1453
Mox20I	TGGCCA	1 cut(s)	1505
MroXI	GAANNNNTTC	2 cut(s)	508, 1120
MscI	TGGCCA	1 cut(s)	1505
MseI	TTAA	6 cut(s)	30, 69, 326, 735, 774, 1103
MslI	CAYNNNNRTG	2 cut(s)	924, 1224
Msp20I	TGGCCA	1 cut(s)	1505
MspI	CCGG	1 cut(s)	998
MspR9I	CCNGG	5 cut(s)	193, 1011, 1022, 1346, 1552
MunI	CAATTG	1 cut(s)	305
MvaI	CCWGG	5 cut(s)	193, 1011, 1022, 1346, 1552
MvnI	CGCG	1 cut(s)	78
MwoI	GCNNNNNNNGC	1 cut(s)	543
NdeI	CATATG	1 cut(s)	349
NlaIII	CATG	6 cut(s)	407, 451, 602, 834, 929, 1223
NlaIV	GGNNCC	3 cut(s)	198, 380, 1427
NruI	TCGCGA	1 cut(s)	78
NsbI	TGCGCA	1 cut(s)	1252
NspI	RCATGY	2 cut(s)	834, 929
NspV	TTCGAA	1 cut(s)	455
PasI	CCCWGGG	1 cut(s)	1021
PciI	ACATGT	1 cut(s)	830
PdmI	GAANNNNTTC	2 cut(s)	508, 1120
PfeI	GAWTC	5 cut(s)	391, 970, 992, 1096, 1245
PflFI	GACNNNGTC	1 cut(s)	725
PkrI	GCNGC	5 cut(s)	271, 274, 679, 849, 1054
PleI	GAGTC	1 cut(s)	994
PpsI	GAGTC	1 cut(s)	994
PscI	ACATGT	1 cut(s)	830
Psp124BI	GAGCTC	1 cut(s)	1273
Psp6I	CCWGG	5 cut(s)	191, 1009, 1020, 1344, 1550
PspGI	CCWGG	5 cut(s)	191, 1009, 1020, 1344, 1550
PspN4I	GGNNCC	3 cut(s)	198, 380, 1427
PspPI	GGNCC	1 cut(s)	378
PsrI	GAACNNNNNNTAC	2 cut(s)	449, 481
PstI	CTGCAG	1 cut(s)	1057
PsuI	RGATCY	3 cut(s)	42, 424, 1425
PsyI	GACNNNGTC	1 cut(s)	725
RruI	TCGCGA	1 cut(s)	78
RsaI	GTAC	9 cut(s)	38, 229, 296, 603, 626, 1035, 1041, 1568, 1575
RsaNI	GTAC	9 cut(s)	37, 228, 295, 602, 625, 1034, 1040, 1567, 1574
RseI	CAYNNNNRTG	2 cut(s)	924, 1224
SacI	GAGCTC	1 cut(s)	1273
SalI	GTCGAC	1 cut(s)	664
SaqAI	TTAA	6 cut(s)	30, 69, 326, 735, 774, 1103
SatI	GCNGC	5 cut(s)	270, 273, 678, 848, 1053
Sau96I	GGNCC	1 cut(s)	378
ScaI	AGTACT	2 cut(s)	229, 296
SchI	GAGTC	1 cut(s)	995
ScrFI	CCNGG	5 cut(s)	193, 1011, 1022, 1346, 1552
SduI	GDGCHC	2 cut(s)	199, 1273
SfaNI	GCATC	5 cut(s)	559, 661, 708, 1025, 1403
SfcI	CTRYAG	3 cut(s)	1053, 1069, 1530
SfuI	TTCGAA	1 cut(s)	455
SmiMI	CAYNNNNRTG	2 cut(s)	924, 1224
SmlI	CTYRAG	1 cut(s)	276
SmoI	CTYRAG	1 cut(s)	276
SsiI	CCGC	2 cut(s)	1142, 1548
SspMI	CTAG	4 cut(s)	23, 357, 560, 1463
SstI	GAGCTC	1 cut(s)	1273
StyD4I	CCNGG	5 cut(s)	191, 1009, 1020, 1344, 1550
StyI	CCWWGG	2 cut(s)	1408, 1518
TaaI	ACNGT	6 cut(s)	121, 137, 524, 684, 772, 1073
TaqII	GACCGA	1 cut(s)	645
TatI	WGTACW	4 cut(s)	36, 227, 294, 1033
TfiI	GAWTC	5 cut(s)	391, 970, 992, 1096, 1245
Tru1I	TTAA	6 cut(s)	30, 69, 326, 735, 774, 1103
Tru9I	TTAA	6 cut(s)	30, 69, 326, 735, 774, 1103
TscAI	CASTG	4 cut(s)	150, 529, 687, 816
TseI	GCWGC	5 cut(s)	269, 272, 677, 847, 1052
TspDTI	ATGAA	5 cut(s)	231, 392, 931, 1017, 1206
TspGWI	ACGGA	1 cut(s)	1438
TspRI	CASTG	4 cut(s)	150, 529, 687, 816
Tth111I	GACNNNGTC	1 cut(s)	725
XapI	RAATTY	2 cut(s)	59, 111
XbaI	TCTAGA	1 cut(s)	356
XceI	RCATGY	2 cut(s)	834, 929
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1558
XmiI	GTMKAC	3 cut(s)	665, 729, 1068
XmnI	GAANNNNTTC	2 cut(s)	508, 1120
XspI	CTAG	4 cut(s)	23, 357, 560, 1463
ZrmI	AGTACT	2 cut(s)	229, 296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.