Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0016972

Physical Location & Seq

Genomic Coordinates Forward (+)

7826720 .. 7849367

Gene Structure 22648 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG075500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGACCTCTAGCCCCGACGCCGACGAGCTAGATGAGTTGGAGTGCCAAGTCACCGAAATGGCGGTGAAGATTCAAGAGTACCGAGCCACTGTACCAGAGCAGCTCAAGAACACGCTACCTTCCATTATCGAAGCTCAGAGACCCGTTTCGGCTGATGGGTCGGAGCCTAGGACGTCTGGGGATCCAAATTCGGACAAAATTGTCAGGAAACTGTTGCAACCTAGGGTCTATCTCAAATTGATTAATCTGGGTCTTGAGGTGGCCTTCATCTCTGCTCAACTGAAGCCCCTCAGTTCGGTTCAGAGTTTTCATGCAGATCGAGAAGAAAGAGATCCAAGATTTCAGAACCAACCCATCTTTTTGAACGAAGTTTACGAAAGAGGCGTTGAAGTGGTTCTGTATGAGAAAAAATACTACGGGGGTGATCATGCCAGAACTGTCACATATGATGGTGTTGATTTGGACCTTGGTTTCATGGTCTTCAATCATGTAATGTATCCAAATATGATGGAGTTCTTTGAGAGCCTTGGAGTTGATATGGAGACATGCAACATGTCCTTCTCAGTGAGTTTAGATAAAGGACGGGGCTGTGAATGGGGTAGTCGAAATAGTCTCTCAAGCTTGTTTGCAGAAAAGAAGAACTTGTTCAACCCATACTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006629 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0008825 GO:0009987 GO:0016740 GO:0016741 GO:0030258 GO:0032259 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Amino_oxidase CMAS NAD_binding_8

Protein Analysis

220

Amino Acids

25.07

Weight (kDa)

4.81

Isoelectric Point (pI)

27.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016972)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0323591 RchiOBHm_Chr1g0333521 RchiOBHm_Chr3g0459541 RchiOBHm_Chr4g0410101 RchiOBHm_Chr4g0410181
rosa_laevigata	RLG00000029555
rosa_multiflora	Rmu_sc0004133.1_g000006
rosa_roxburghii	Rroxscaffold_7G00197180
rosa_rugosa	Rorug06G0282800 Rorug07G0294900
rosa_samantha	Rh4AG165500 Rh4AG182000 Rh4DG177600 Rh6CG075500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	200
AatII	GACGTC	1 cut(s)	176
AciI	CCGC	1 cut(s)	62
AclWI	GGATC	3 cut(s)	176, 189, 326
AcsI	RAATTY	1 cut(s)	187
AcuI	CTGAAG	1 cut(s)	302
AcyI	GRCGYC	2 cut(s)	18, 173
AfaI	GTAC	2 cut(s)	80, 93
AfiI	CCNNNNNNNGG	1 cut(s)	295
AflIII	ACRYGT	1 cut(s)	552
AgsI	TTSAA	5 cut(s)	74, 364, 389, 484, 649
AluBI	AGCT	4 cut(s)	28, 103, 134, 621
AluI	AGCT	4 cut(s)	28, 103, 134, 621
Alw26I	GTCTC	3 cut(s)	133, 536, 617
AlwI	GGATC	3 cut(s)	176, 189, 326
AoxI	GGCC	1 cut(s)	261
ApeKI	GCWGC	1 cut(s)	100
ApoI	RAATTY	1 cut(s)	187
AseI	ATTAAT	1 cut(s)	243
Asp700I	GAANNNNTTC	2 cut(s)	393, 644
AspA2I	CCTAGG	2 cut(s)	167, 221
AspS9I	GGNCC	1 cut(s)	463
AsuHPI	GGTGA	3 cut(s)	43, 76, 434
AvaII	GGWCC	1 cut(s)	463
AvrII	CCTAGG	2 cut(s)	167, 221
BamHI	GGATCC	1 cut(s)	181
BbsI	GAAGAC	1 cut(s)	472
BbvI	GCAGC	1 cut(s)	112
BccI	CCATC	4 cut(s)	149, 362, 443, 502
BciVI	GTATCC	1 cut(s)	507
BclI	TGATCA	1 cut(s)	424
BcoDI	GTCTC	3 cut(s)	133, 536, 617
BfaI	CTAG	5 cut(s)	9, 29, 168, 222, 661
BfuI	GTATCC	1 cut(s)	507
BisI	GCNGC	1 cut(s)	101
BlnI	CCTAGG	2 cut(s)	167, 221
BlsI	GCNGC	1 cut(s)	102
Bme18I	GGWCC	1 cut(s)	463
BmgT120I	GGNCC	1 cut(s)	463
BmiI	GGNNCC	2 cut(s)	165, 183
BpiI	GAAGAC	1 cut(s)	472
BpuEI	CTTGAG	3 cut(s)	89, 275, 601
BsaHI	GRCGYC	2 cut(s)	18, 173
BsaI	GGTCTC	1 cut(s)	133
BsaJI	CCNNGG	4 cut(s)	167, 221, 466, 526
Bsc4I	CCNNNNNNNGG	1 cut(s)	295
BseDI	CCNNGG	4 cut(s)	167, 221, 466, 526
BseLI	CCNNNNNNNGG	1 cut(s)	295
BseMII	CTCAG	3 cut(s)	149, 304, 576
BseXI	GCAGC	1 cut(s)	112
BshFI	GGCC	1 cut(s)	263
BslI	CCNNNNNNNGG	1 cut(s)	295
BsmAI	GTCTC	3 cut(s)	133, 536, 617
BsnI	GGCC	1 cut(s)	263
Bso31I	GGTCTC	1 cut(s)	133
Bsp143I	GATC	4 cut(s)	181, 316, 331, 424
BspACI	CCGC	1 cut(s)	62
BspANI	GGCC	1 cut(s)	263
BspCNI	CTCAG	3 cut(s)	148, 303, 575
BspLI	GGNNCC	2 cut(s)	165, 183
BspPI	GGATC	3 cut(s)	176, 189, 326
BspTNI	GGTCTC	1 cut(s)	133
BssECI	CCNNGG	4 cut(s)	167, 221, 466, 526
BssMI	GATC	4 cut(s)	181, 316, 331, 424
BssNI	GRCGYC	2 cut(s)	18, 173
BssT1I	CCWWGG	4 cut(s)	167, 221, 466, 526
Bst4CI	ACNGT	3 cut(s)	91, 213, 439
BstACI	GRCGYC	2 cut(s)	18, 173
BstDEI	CTNAG	3 cut(s)	135, 290, 562
BstKTI	GATC	4 cut(s)	184, 319, 334, 427
BstMAI	GTCTC	3 cut(s)	133, 536, 617
BstMBI	GATC	4 cut(s)	181, 316, 331, 424
BstNSI	RCATGY	2 cut(s)	549, 556
BstV1I	GCAGC	1 cut(s)	112
BstV2I	GAAGAC	1 cut(s)	472
BstX2I	RGATCY	2 cut(s)	181, 331
BstYI	RGATCY	2 cut(s)	181, 331
BsuI	GTATCC	1 cut(s)	507
BsuRI	GGCC	1 cut(s)	263
BtsIMutI	CAGTG	2 cut(s)	87, 570
Cfr13I	GGNCC	1 cut(s)	463
CseI	GACGC	1 cut(s)	26
Csp6I	GTAC	2 cut(s)	79, 92
CviAII	CATG	6 cut(s)	311, 428, 475, 488, 546, 553
CviQI	GTAC	2 cut(s)	79, 92
DdeI	CTNAG	3 cut(s)	135, 290, 562
DpnI	GATC	4 cut(s)	183, 318, 333, 426
DpnII	GATC	4 cut(s)	181, 316, 331, 424
DrdI	GACNNNNNNGTC	1 cut(s)	200
DseDI	GACNNNNNNGTC	1 cut(s)	200
Eco130I	CCWWGG	4 cut(s)	167, 221, 466, 526
Eco31I	GGTCTC	1 cut(s)	133
Eco47I	GGWCC	1 cut(s)	463
Eco57I	CTGAAG	1 cut(s)	302
EcoT14I	CCWWGG	4 cut(s)	167, 221, 466, 526
ErhI	CCWWGG	4 cut(s)	167, 221, 466, 526
FaeI	CATG	6 cut(s)	314, 431, 478, 491, 549, 556
FalI	AAGNNNNNCTT	2 cut(s)	626, 658
FatI	CATG	6 cut(s)	310, 427, 474, 487, 545, 552
FauNDI	CATATG	1 cut(s)	445
FbaI	TGATCA	1 cut(s)	424
Fnu4HI	GCNGC	1 cut(s)	101
Fsp4HI	GCNGC	1 cut(s)	101
FspBI	CTAG	5 cut(s)	9, 29, 168, 222, 661
GluI	GCNGC	1 cut(s)	101
HaeIII	GGCC	1 cut(s)	263
HgaI	GACGC	1 cut(s)	26
Hin1I	GRCGYC	2 cut(s)	18, 173
Hin1II	CATG	6 cut(s)	314, 431, 478, 491, 549, 556
HindIII	AAGCTT	1 cut(s)	619
HinfI	GANTC	1 cut(s)	70
HphI	GGTGA	3 cut(s)	43, 76, 434
Hpy166II	GTNNAC	1 cut(s)	373
Hpy188I	TCNGA	5 cut(s)	138, 163, 193, 303, 345
Hpy188III	TCNNGA	5 cut(s)	74, 106, 205, 254, 320
Hpy8I	GTNNAC	1 cut(s)	373
Hpy99I	CGWCG	2 cut(s)	20, 26
HpyAV	CCTTC	3 cut(s)	129, 274, 568
HpyCH4III	ACNGT	3 cut(s)	91, 213, 439
HpyCH4IV	ACGT	1 cut(s)	173
HpyCH4V	TGCA	4 cut(s)	217, 314, 549, 629
HpyF3I	CTNAG	3 cut(s)	135, 290, 562
HpySE526I	ACGT	1 cut(s)	173
Hsp92I	GRCGYC	2 cut(s)	18, 173
Hsp92II	CATG	6 cut(s)	314, 431, 478, 491, 549, 556
Ksp22I	TGATCA	1 cut(s)	424
Kzo9I	GATC	4 cut(s)	181, 316, 331, 424
LmnI	GCTCC	1 cut(s)	163
LpnPI	CCDG	5 cut(s)	108, 162, 190, 233, 445
Lsp1109I	GCAGC	1 cut(s)	112
MaeI	CTAG	5 cut(s)	9, 29, 168, 222, 661
MaeII	ACGT	1 cut(s)	173
MaeIII	GTNAC	2 cut(s)	49, 439
MalI	GATC	4 cut(s)	183, 318, 333, 426
MboI	GATC	4 cut(s)	181, 316, 331, 424
MboII	GAAGA	4 cut(s)	79, 335, 472, 649
MflI	RGATCY	2 cut(s)	181, 331
MluCI	AATT	3 cut(s)	187, 198, 236
MmeI	TCCRAC	2 cut(s)	18, 141
MnlI	CCTC	4 cut(s)	16, 250, 299, 374
MroXI	GAANNNNTTC	2 cut(s)	393, 644
MseI	TTAA	1 cut(s)	243
MslI	CAYNNNNRTG	1 cut(s)	56
NdeI	CATATG	1 cut(s)	445
NdeII	GATC	4 cut(s)	181, 316, 331, 424
NlaIII	CATG	6 cut(s)	314, 431, 478, 491, 549, 556
NlaIV	GGNNCC	2 cut(s)	165, 183
NmuCI	GTSAC	2 cut(s)	49, 439
NspI	RCATGY	2 cut(s)	549, 556
PciI	ACATGT	1 cut(s)	552
PcsI	WCGNNNNNNNCGW	2 cut(s)	372, 381
PdmI	GAANNNNTTC	2 cut(s)	393, 644
PfeI	GAWTC	1 cut(s)	70
PkrI	GCNGC	1 cut(s)	102
PscI	ACATGT	1 cut(s)	552
PshBI	ATTAAT	1 cut(s)	243
PspN4I	GGNNCC	2 cut(s)	165, 183
PspPI	GGNCC	1 cut(s)	463
PsrI	GAACNNNNNNTAC	2 cut(s)	356, 388
PsuI	RGATCY	2 cut(s)	181, 331
RsaI	GTAC	2 cut(s)	80, 93
RsaNI	GTAC	2 cut(s)	79, 92
RseI	CAYNNNNRTG	1 cut(s)	56
SaqAI	TTAA	1 cut(s)	243
SatI	GCNGC	1 cut(s)	101
Sau3AI	GATC	4 cut(s)	181, 316, 331, 424
Sau96I	GGNCC	1 cut(s)	463
SinI	GGWCC	1 cut(s)	463
SmiMI	CAYNNNNRTG	1 cut(s)	56
SmlI	CTYRAG	3 cut(s)	104, 254, 616
SmoI	CTYRAG	3 cut(s)	104, 254, 616
Sse9I	AATT	3 cut(s)	187, 198, 236
SsiI	CCGC	1 cut(s)	62
SspMI	CTAG	5 cut(s)	9, 29, 168, 222, 661
StyI	CCWWGG	4 cut(s)	167, 221, 466, 526
TaaI	ACNGT	3 cut(s)	91, 213, 439
TaiI	ACGT	1 cut(s)	176
TaqI	TCGA	3 cut(s)	129, 319, 604
TasI	AATT	3 cut(s)	187, 198, 236
TfiI	GAWTC	1 cut(s)	70
Tru1I	TTAA	1 cut(s)	243
Tru9I	TTAA	1 cut(s)	243
TscAI	CASTG	2 cut(s)	94, 570
TseFI	GTSAC	2 cut(s)	49, 439
TseI	GCWGC	1 cut(s)	100
Tsp45I	GTSAC	2 cut(s)	49, 439
TspDTI	ATGAA	3 cut(s)	256, 299, 463
TspRI	CASTG	2 cut(s)	94, 570
VpaK11BI	GGWCC	1 cut(s)	463
VspI	ATTAAT	1 cut(s)	243
XapI	RAATTY	1 cut(s)	187
XceI	RCATGY	2 cut(s)	549, 556
XmaJI	CCTAGG	2 cut(s)	167, 221
XmnI	GAANNNNTTC	2 cut(s)	393, 644
XspI	CTAG	5 cut(s)	9, 29, 168, 222, 661
ZraI	GACGTC	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.