Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004133.1

Orthogroup ID

OG0016972

Physical Location & Seq

Genomic Coordinates Reverse (-)

61794 .. 67267

Gene Structure 5474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004133.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

atgattagactggagatttgggcaaatccagtggccttcatttctgttcaactgaagcccctcagttcgattcagagttttcatgtagatcgagaagaaagagatccaagatttcagaaccaacccatcttttcaaacaaagtttacgaaagagctgaccaaaggcaactggacaaagacagaagatgttctgatcctctcagtgatactgaaagctactattgcaggcatcaatttccagaaccaagtctctacttctttcgggaagcatcggtcaaagtcgacttcaactactgcactatcaacatcaatcgagagagagagactggggtggatgcccgggcatatcgatggattccgagagcaaagaaaatgcaagaccagatgttggctacctatgatctatctgagctgcaaattgaggatgatggaaattgccagtttcgagcaatagcttatcagtttttcgcaatccagattaccataagcatgttagaaagcaggtttgacgaatctgtgaatgtcaagcaggttcagagcatattgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OTU

Protein Analysis

182

Amino Acids

21.66

Weight (kDa)

5.51

Isoelectric Point (pI)

42.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016972)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0323591 RchiOBHm_Chr1g0333521 RchiOBHm_Chr3g0459541 RchiOBHm_Chr4g0410101 RchiOBHm_Chr4g0410181
rosa_laevigata	RLG00000029555
rosa_multiflora	Rmu_sc0004133.1_g000006
rosa_roxburghii	Rroxscaffold_7G00197180
rosa_rugosa	Rorug06G0282800 Rorug07G0294900
rosa_samantha	Rh4AG165500 Rh4AG182000 Rh4DG177600 Rh6CG075500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	492, 520
AccB7I	CCANNNNNTGG	1 cut(s)	388
AccI	GTMKAC	1 cut(s)	282
AclWI	GGATC	2 cut(s)	98, 188
AcuI	CTGAAG	1 cut(s)	74
AfiI	CCNNNNNNNGG	1 cut(s)	388
AgsI	TTSAA	3 cut(s)	50, 135, 289
AluBI	AGCT	4 cut(s)	155, 216, 412, 455
AluI	AGCT	4 cut(s)	155, 216, 412, 455
Alw26I	GTCTC	2 cut(s)	254, 317
AlwI	GGATC	2 cut(s)	98, 188
Ama87I	CYCGRG	1 cut(s)	339
AoxI	GGCC	1 cut(s)	33
ApeKI	GCWGC	1 cut(s)	412
ArsI	GACNNNNNNTTYG	1 cut(s)	32
Asp700I	GAANNNNTTC	1 cut(s)	187
AsuC2I	CCSGG	2 cut(s)	340, 341
AvaI	CYCGRG	1 cut(s)	339
BbvI	GCAGC	1 cut(s)	399
BccI	CCATC	3 cut(s)	134, 345, 422
BcnI	CCSGG	2 cut(s)	340, 341
BcoDI	GTCTC	2 cut(s)	254, 317
BfuAI	ACCTGC	2 cut(s)	492, 520
BisI	GCNGC	1 cut(s)	413
BlsI	GCNGC	1 cut(s)	414
Bme1390I	CCNGG	2 cut(s)	340, 341
BmeT110I	CYCGRG	1 cut(s)	339
BmrFI	CCNGG	2 cut(s)	340, 341
BmrI	ACTGGG	1 cut(s)	336
BmsI	GCATC	3 cut(s)	238, 278, 325
BmuI	ACTGGG	1 cut(s)	336
BpmI	CTGGAG	1 cut(s)	32
BpuMI	CCSGG	2 cut(s)	340, 341
Bsa29I	ATCGAT	1 cut(s)	349
BsaJI	CCNNGG	1 cut(s)	339
Bsc4I	CCNNNNNNNGG	1 cut(s)	388
Bse1I	ACTGG	5 cut(s)	15, 29, 174, 331, 439
BseCI	ATCGAT	1 cut(s)	349
BseDI	CCNNGG	1 cut(s)	339
BseGI	GGATG	2 cut(s)	340, 430
BseLI	CCNNNNNNNGG	1 cut(s)	388
BseMII	CTCAG	3 cut(s)	76, 214, 399
BseNI	ACTGG	5 cut(s)	15, 29, 174, 331, 439
BseXI	GCAGC	1 cut(s)	399
BsgI	GTGCAG	1 cut(s)	280
BshFI	GGCC	1 cut(s)	35
BshVI	ATCGAT	1 cut(s)	349
BsiHKCI	CYCGRG	1 cut(s)	339
BsiSI	CCGG	1 cut(s)	340
BslI	CCNNNNNNNGG	1 cut(s)	388
BsmAI	GTCTC	2 cut(s)	254, 317
BsnI	GGCC	1 cut(s)	35
BsoBI	CYCGRG	1 cut(s)	339
Bsp143I	GATC	4 cut(s)	88, 103, 193, 400
BspANI	GGCC	1 cut(s)	35
BspCNI	CTCAG	3 cut(s)	75, 213, 400
BspDI	ATCGAT	1 cut(s)	349
BspMI	ACCTGC	2 cut(s)	492, 520
BspPI	GGATC	2 cut(s)	98, 188
BsrI	ACTGG	5 cut(s)	15, 29, 174, 331, 439
BssECI	CCNNGG	1 cut(s)	339
BssMI	GATC	4 cut(s)	88, 103, 193, 400
BstC8I	GCNNGC	1 cut(s)	227
BstDEI	CTNAG	3 cut(s)	62, 200, 408
BstF5I	GGATG	2 cut(s)	340, 430
BstKTI	GATC	4 cut(s)	91, 106, 196, 403
BstMAI	GTCTC	2 cut(s)	254, 317
BstMBI	GATC	4 cut(s)	88, 103, 193, 400
BstMWI	GCNNNNNNNGC	1 cut(s)	222
BstNSI	RCATGY	1 cut(s)	493
BstSCI	CCNGG	2 cut(s)	338, 339
BstV1I	GCAGC	1 cut(s)	399
BstX2I	RGATCY	1 cut(s)	103
BstYI	RGATCY	1 cut(s)	103
Bsu15I	ATCGAT	1 cut(s)	349
BsuRI	GGCC	1 cut(s)	35
BsuTUI	ATCGAT	1 cut(s)	349
BtsCI	GGATG	2 cut(s)	340, 430
BtsIMutI	CAGTG	2 cut(s)	36, 208
BveI	ACCTGC	2 cut(s)	492, 520
Cac8I	GCNNGC	1 cut(s)	227
Cfr9I	CCCGGG	1 cut(s)	339
ClaI	ATCGAT	1 cut(s)	349
CspCI	CAANNNNNGTGG	2 cut(s)	12, 47
CviAII	CATG	2 cut(s)	83, 490
CviJI	RGCY	7 cut(s)	35, 58, 155, 216, 392, 412, 455
CviKI_1	RGCY	7 cut(s)	35, 58, 155, 216, 392, 412, 455
DdeI	CTNAG	3 cut(s)	62, 200, 408
DpnI	GATC	4 cut(s)	90, 105, 195, 402
DpnII	GATC	4 cut(s)	88, 103, 193, 400
Eco57I	CTGAAG	1 cut(s)	74
Eco88I	CYCGRG	1 cut(s)	339
FaeI	CATG	2 cut(s)	86, 493
FaiI	YATR	6 cut(s)	84, 346, 399, 485, 491, 542
FatI	CATG	2 cut(s)	82, 489
FblI	GTMKAC	1 cut(s)	282
Fnu4HI	GCNGC	1 cut(s)	413
FokI	GGATG	2 cut(s)	347, 437
Fsp4HI	GCNGC	1 cut(s)	413
GluI	GCNGC	1 cut(s)	413
GsuI	CTGGAG	1 cut(s)	32
HaeIII	GGCC	1 cut(s)	35
HapII	CCGG	1 cut(s)	340
Hin1II	CATG	2 cut(s)	86, 493
HincII	GTYRAC	1 cut(s)	283
HindII	GTYRAC	1 cut(s)	283
HinfI	GANTC	3 cut(s)	70, 355, 512
HpaII	CCGG	1 cut(s)	340
Hpy166II	GTNNAC	2 cut(s)	145, 283
Hpy188I	TCNGA	6 cut(s)	75, 117, 193, 360, 409, 537
Hpy188III	TCNNGA	5 cut(s)	92, 239, 263, 314, 475
Hpy8I	GTNNAC	2 cut(s)	145, 283
HpyAV	CCTTC	1 cut(s)	46
HpyCH4V	TGCA	4 cut(s)	225, 297, 376, 415
HpyF10VI	GCNNNNNNNGC	1 cut(s)	222
HpyF3I	CTNAG	3 cut(s)	62, 200, 408
Hsp92II	CATG	2 cut(s)	86, 493
Kzo9I	GATC	4 cut(s)	88, 103, 193, 400
Lsp1109I	GCAGC	1 cut(s)	399
LweI	GCATC	3 cut(s)	238, 278, 325
MalI	GATC	4 cut(s)	90, 105, 195, 402
MboI	GATC	4 cut(s)	88, 103, 193, 400
MboII	GAAGA	2 cut(s)	107, 195
MflI	RGATCY	1 cut(s)	103
MluCI	AATT	3 cut(s)	233, 417, 433
MnlI	CCTC	3 cut(s)	71, 207, 415
MroXI	GAANNNNTTC	1 cut(s)	187
MslI	CAYNNNNRTG	2 cut(s)	349, 488
MspI	CCGG	1 cut(s)	340
MspR9I	CCNGG	2 cut(s)	340, 341
MwoI	GCNNNNNNNGC	1 cut(s)	222
NciI	CCSGG	2 cut(s)	340, 341
NdeII	GATC	4 cut(s)	88, 103, 193, 400
NlaIII	CATG	2 cut(s)	86, 493
NspI	RCATGY	1 cut(s)	493
PdmI	GAANNNNTTC	1 cut(s)	187
PfeI	GAWTC	3 cut(s)	70, 355, 512
PflMI	CCANNNNNTGG	1 cut(s)	388
PkrI	GCNGC	1 cut(s)	414
PsuI	RGATCY	1 cut(s)	103
RseI	CAYNNNNRTG	2 cut(s)	349, 488
SalI	GTCGAC	1 cut(s)	281
SatI	GCNGC	1 cut(s)	413
Sau3AI	GATC	4 cut(s)	88, 103, 193, 400
ScrFI	CCNGG	2 cut(s)	340, 341
SetI	ASST	7 cut(s)	157, 218, 398, 414, 457, 506, 534
SfaNI	GCATC	3 cut(s)	238, 278, 325
SmaI	CCCGGG	1 cut(s)	341
SmiMI	CAYNNNNRTG	2 cut(s)	349, 488
SrfI	GCCCGGGC	1 cut(s)	341
Sse9I	AATT	3 cut(s)	233, 417, 433
StyD4I	CCNGG	2 cut(s)	338, 339
TaqI	TCGA	6 cut(s)	68, 91, 282, 313, 349, 445
TaqII	GACCGA	1 cut(s)	262
TasI	AATT	3 cut(s)	233, 417, 433
TfiI	GAWTC	3 cut(s)	70, 355, 512
TscAI	CASTG	2 cut(s)	36, 208
TseI	GCWGC	1 cut(s)	412
TspDTI	ATGAA	2 cut(s)	28, 71
TspMI	CCCGGG	1 cut(s)	339
TspRI	CASTG	2 cut(s)	36, 208
Van91I	CCANNNNNTGG	1 cut(s)	388
XceI	RCATGY	1 cut(s)	493
XmaI	CCCGGG	1 cut(s)	339
XmiI	GTMKAC	1 cut(s)	282
XmnI	GAANNNNTTC	1 cut(s)	187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.