RLG00000029896

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0015745
Physical Location & Seq
Forward (+)
50970827 .. 50976270
5444 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029896

Sequence Viewer

Length: 417 bp
ATGGTGGTGCTGTTGATCGGAGCGGGTGAGATTGGTGAGAGCGAGAGGGCGGTGGGCGGCCTCGTCATCATCGTCGTCCTCGTGGGCGGCTCGAGGGAAGAGAAGAAGGTGGAGGAGACAGTGGCGCTGACCTATCTTCAATTTGCTTCAAACCTATCTTCCCAAATTCAACGAGGAGGGGACCGGCGGAGAGGTGGGGTGAGACCGAGGGAGGTGAGGCAGTTGACCTTGGAGGGATTGGTGTTGTCTTTGACCTTGAAAAGGACGATATGCTCGACAACGGGGAATGACGACATGGTGATGGTGGCGAATGTGGGGATGCGGGTTTGGGGAAAGAGAGGTGGTGGTGGATTTCTCTTTCAATACTCCGACGCCATTGCTGAAACCCGCAACTCGACCACTTCTGTCTTCAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

139

Amino Acids

14.85

Weight (kDa)

9.42

Isoelectric Point (pI)

35.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 23
AciI CCGC 7 cut(s) 23, 50, 57, 87, 187, 322, 388
AcsI RAATTY 1 cut(s) 165
AcuI CTGAAG 1 cut(s) 394
AcyI GRCGYC 1 cut(s) 372
AfiI CCNNNNNNNGG 1 cut(s) 261
AgsI TTSAA 5 cut(s) 140, 150, 170, 259, 362
AluBI AGCT 1 cut(s) 414
AluI AGCT 1 cut(s) 414
Alw26I GTCTC 2 cut(s) 110, 196
Ama87I CYCGRG 1 cut(s) 91
AoxI GGCC 1 cut(s) 58
ApoI RAATTY 1 cut(s) 165
AspLEI GCGC 1 cut(s) 127
AspS9I GGNCC 1 cut(s) 181
AsuHPI GGTGA 5 cut(s) 38, 47, 211, 226, 310
AvaI CYCGRG 1 cut(s) 91
AvaII GGWCC 1 cut(s) 181
BauI CACGAG 1 cut(s) 80
BbsI GAAGAC 1 cut(s) 400
BccI CCATC 1 cut(s) 295
BcgI CGANNNNNNTGC 2 cut(s) 359, 393
BcoDI GTCTC 2 cut(s) 110, 196
BfoI RGCGCY 1 cut(s) 128
BisI GCNGC 2 cut(s) 58, 88
BlsI GCNGC 2 cut(s) 59, 89
Bme18I GGWCC 1 cut(s) 181
BmeT110I CYCGRG 1 cut(s) 91
BmgT120I GGNCC 1 cut(s) 181
BmiI GGNNCC 1 cut(s) 182
BmsI GCATC 1 cut(s) 309
BpiI GAAGAC 1 cut(s) 400
BsaHI GRCGYC 1 cut(s) 372
BsaI GGTCTC 1 cut(s) 196
BsaJI CCNNGG 2 cut(s) 206, 228
Bsc4I CCNNNNNNNGG 1 cut(s) 261
Bse118I RCCGGY 1 cut(s) 183
Bse3DI GCAATG 1 cut(s) 375
BseDI CCNNGG 2 cut(s) 206, 228
BseGI GGATG 1 cut(s) 324
BseLI CCNNNNNNNGG 1 cut(s) 261
BseMI GCAATG 1 cut(s) 375
BseRI GAGGAG 2 cut(s) 128, 189
BshFI GGCC 1 cut(s) 60
BsiHKCI CYCGRG 1 cut(s) 91
BsiSI CCGG 1 cut(s) 184
BslFI GGGAC 1 cut(s) 194
BslI CCNNNNNNNGG 1 cut(s) 261
BsmAI GTCTC 2 cut(s) 110, 196
BsmFI GGGAC 1 cut(s) 194
BsnI GGCC 1 cut(s) 60
Bso31I GGTCTC 1 cut(s) 196
BsoBI CYCGRG 1 cut(s) 91
Bsp143I GATC 1 cut(s) 15
BspACI CCGC 7 cut(s) 23, 50, 57, 87, 187, 322, 388
BspANI GGCC 1 cut(s) 60
BspLI GGNNCC 1 cut(s) 182
BspTNI GGTCTC 1 cut(s) 196
BsrBI CCGCTC 1 cut(s) 23
BsrDI GCAATG 1 cut(s) 375
BsrFI RCCGGY 1 cut(s) 183
BssAI RCCGGY 1 cut(s) 183
BssECI CCNNGG 2 cut(s) 206, 228
BssMI GATC 1 cut(s) 15
BssNI GRCGYC 1 cut(s) 372
BssSI CACGAG 1 cut(s) 80
BssT1I CCWWGG 1 cut(s) 228
Bst2BI CACGAG 1 cut(s) 80
Bst4CI ACNGT 1 cut(s) 121
Bst6I CTCTTC 1 cut(s) 93
BstACI GRCGYC 1 cut(s) 372
BstENI CCTNNNNNAGG 1 cut(s) 259
BstF5I GGATG 1 cut(s) 324
BstH2I RGCGCY 1 cut(s) 128
BstHHI GCGC 1 cut(s) 127
BstKTI GATC 1 cut(s) 18
BstMAI GTCTC 2 cut(s) 110, 196
BstMBI GATC 1 cut(s) 15
BstV2I GAAGAC 1 cut(s) 400
BsuRI GGCC 1 cut(s) 60
BtsCI GGATG 1 cut(s) 324
BtsIMutI CAGTG 1 cut(s) 126
CfoI GCGC 1 cut(s) 127
Cfr10I RCCGGY 1 cut(s) 183
Cfr13I GGNCC 1 cut(s) 181
CseI GACGC 1 cut(s) 380
CviAII CATG 1 cut(s) 295
CviJI RGCY 3 cut(s) 60, 90, 414
CviKI_1 RGCY 3 cut(s) 60, 90, 414
DpnI GATC 1 cut(s) 17
DpnII GATC 1 cut(s) 15
Eam1104I CTCTTC 1 cut(s) 93
EarI CTCTTC 1 cut(s) 93
EciI GGCGGA 1 cut(s) 202
Eco130I CCWWGG 1 cut(s) 228
Eco31I GGTCTC 1 cut(s) 196
Eco47I GGWCC 1 cut(s) 181
Eco57I CTGAAG 1 cut(s) 394
Eco88I CYCGRG 1 cut(s) 91
EcoNI CCTNNNNNAGG 1 cut(s) 259
EcoT14I CCWWGG 1 cut(s) 228
ErhI CCWWGG 1 cut(s) 228
FaeI CATG 1 cut(s) 298
FaiI YATR 2 cut(s) 271, 296
FaqI GGGAC 1 cut(s) 194
FatI CATG 1 cut(s) 294
FauI CCCGC 3 cut(s) 16, 315, 395
Fnu4HI GCNGC 2 cut(s) 58, 88
FokI GGATG 1 cut(s) 331
Fsp4HI GCNGC 2 cut(s) 58, 88
GlaI GCGC 1 cut(s) 126
GluI GCNGC 2 cut(s) 58, 88
HaeII RGCGCY 1 cut(s) 128
HaeIII GGCC 1 cut(s) 60
HapII CCGG 1 cut(s) 184
HgaI GACGC 1 cut(s) 380
HhaI GCGC 1 cut(s) 127
Hin1I GRCGYC 1 cut(s) 372
Hin1II CATG 1 cut(s) 298
Hin6I GCGC 1 cut(s) 125
HinP1I GCGC 1 cut(s) 125
HincII GTYRAC 1 cut(s) 225
HindII GTYRAC 1 cut(s) 225
HpaII CCGG 1 cut(s) 184
HphI GGTGA 5 cut(s) 38, 47, 211, 226, 310
Hpy166II GTNNAC 1 cut(s) 225
Hpy188I TCNGA 2 cut(s) 20, 370
Hpy8I GTNNAC 1 cut(s) 225
Hpy99I CGWCG 2 cut(s) 77, 374
HpyAV CCTTC 1 cut(s) 100
HpyCH4III ACNGT 1 cut(s) 121
Hsp92I GRCGYC 1 cut(s) 372
Hsp92II CATG 1 cut(s) 298
HspAI GCGC 1 cut(s) 125
Kzo9I GATC 1 cut(s) 15
LmnI GCTCC 1 cut(s) 20
LpnPI CCDG 1 cut(s) 197
LweI GCATC 1 cut(s) 309
MalI GATC 1 cut(s) 17
MbiI CCGCTC 1 cut(s) 23
MboI GATC 1 cut(s) 15
MboII GAAGA 5 cut(s) 110, 115, 128, 150, 400
MluCI AATT 2 cut(s) 140, 165
MmeI TCCRAC 1 cut(s) 393
MslI CAYNNNNRTG 1 cut(s) 299
MspA1I CMGCKG 1 cut(s) 414
MspI CCGG 1 cut(s) 184
NdeII GATC 1 cut(s) 15
NlaIII CATG 1 cut(s) 298
NlaIV GGNNCC 1 cut(s) 182
PaeR7I CTCGAG 1 cut(s) 91
PcsI WCGNNNNNNNCGW 3 cut(s) 69, 78, 272
PkrI GCNGC 2 cut(s) 59, 89
PspN4I GGNNCC 1 cut(s) 182
PspPI GGNCC 1 cut(s) 181
PspXI VCTCGAGB 1 cut(s) 91
PvuII CAGCTG 1 cut(s) 414
RseI CAYNNNNRTG 1 cut(s) 299
SatI GCNGC 2 cut(s) 58, 88
Sau3AI GATC 1 cut(s) 15
Sau96I GGNCC 1 cut(s) 181
SetI ASST 9 cut(s) 111, 134, 156, 196, 216, 230, 257, 343, 416
SfaNI GCATC 1 cut(s) 309
Sfr274I CTCGAG 1 cut(s) 91
SinI GGWCC 1 cut(s) 181
SlaI CTCGAG 1 cut(s) 91
SmiMI CAYNNNNRTG 1 cut(s) 299
SmlI CTYRAG 1 cut(s) 91
SmoI CTYRAG 1 cut(s) 91
Sse9I AATT 2 cut(s) 140, 165
SsiI CCGC 7 cut(s) 23, 50, 57, 87, 187, 322, 388
StyI CCWWGG 1 cut(s) 228
TaaI ACNGT 1 cut(s) 121
TaqI TCGA 3 cut(s) 92, 275, 395
TaqII GACCGA 1 cut(s) 220
TasI AATT 2 cut(s) 140, 165
TauI GCSGC 2 cut(s) 60, 90
TscAI CASTG 1 cut(s) 126
TspRI CASTG 1 cut(s) 126
VpaK11BI GGWCC 1 cut(s) 181
XagI CCTNNNNNAGG 1 cut(s) 259
XapI RAATTY 1 cut(s) 165
XhoI CTCGAG 1 cut(s) 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.