Rh7DG451900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0015745
Physical Location & Seq
Reverse (-)
64310120 .. 64310332
213 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG451900.1

Sequence Viewer

Length: 213 bp
ATGGAGATCTGCAGTGACTCGGAGATCACTGCGGCGTTGACCCGGTGGCTGAAGGCGAAGAGGGAAGATCGGGTGCGGAAGAGGGGACCGGCGGAGAGGTGGAGCGTGAGACCAAGAGAGGTGAGGTCGTTGACCTTGGAGGGGTCAATGTCGTCTTTGACGACGATGTGTTCGACGACGGGGGATGATGACATGGTGACGGTGGCAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

70

Amino Acids

7.89

Weight (kDa)

7.8

Isoelectric Point (pI)

64.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 32, 76, 92
AcuI CTGAAG 1 cut(s) 71
AfiI CCNNNNNNNGG 1 cut(s) 141
Alw26I GTCTC 1 cut(s) 103
ArsI GACNNNNNNTTYG 2 cut(s) 154, 186
AspS9I GGNCC 1 cut(s) 86
AsuC2I CCSGG 1 cut(s) 43
AsuHPI GGTGA 2 cut(s) 133, 208
AvaII GGWCC 1 cut(s) 86
BcnI CCSGG 1 cut(s) 43
BcoDI GTCTC 1 cut(s) 103
BfmI CTRYAG 1 cut(s) 10
BglII AGATCT 1 cut(s) 6
BisI GCNGC 1 cut(s) 33
BlsI GCNGC 1 cut(s) 34
Bme1390I CCNGG 1 cut(s) 43
Bme18I GGWCC 1 cut(s) 86
BmgT120I GGNCC 1 cut(s) 86
BmiI GGNNCC 1 cut(s) 87
BmrFI CCNGG 1 cut(s) 43
BpuMI CCSGG 1 cut(s) 43
BsaI GGTCTC 1 cut(s) 103
BsaJI CCNNGG 1 cut(s) 135
Bsc4I CCNNNNNNNGG 1 cut(s) 141
Bse118I RCCGGY 1 cut(s) 88
BseDI CCNNGG 1 cut(s) 135
BseGI GGATG 1 cut(s) 190
BseLI CCNNNNNNNGG 1 cut(s) 141
BsiSI CCGG 2 cut(s) 43, 89
BslFI GGGAC 1 cut(s) 99
BslI CCNNNNNNNGG 1 cut(s) 141
BsmAI GTCTC 1 cut(s) 103
BsmFI GGGAC 1 cut(s) 99
Bso31I GGTCTC 1 cut(s) 103
Bsp143I GATC 3 cut(s) 6, 24, 67
BspACI CCGC 3 cut(s) 32, 76, 92
BspLI GGNNCC 1 cut(s) 87
BspMAI CTGCAG 1 cut(s) 14
BspTNI GGTCTC 1 cut(s) 103
BsrFI RCCGGY 1 cut(s) 88
BssAI RCCGGY 1 cut(s) 88
BssECI CCNNGG 1 cut(s) 135
BssMI GATC 3 cut(s) 6, 24, 67
BssT1I CCWWGG 1 cut(s) 135
Bst4CI ACNGT 1 cut(s) 202
Bst6I CTCTTC 2 cut(s) 53, 74
BstF5I GGATG 1 cut(s) 190
BstKTI GATC 3 cut(s) 9, 27, 70
BstMAI GTCTC 1 cut(s) 103
BstMBI GATC 3 cut(s) 6, 24, 67
BstSCI CCNGG 1 cut(s) 41
BstSFI CTRYAG 1 cut(s) 10
BstX2I RGATCY 1 cut(s) 6
BstYI RGATCY 1 cut(s) 6
BtsCI GGATG 1 cut(s) 190
BtsI GCAGTG 2 cut(s) 19, 27
BtsIMutI CAGTG 2 cut(s) 19, 27
Cfr10I RCCGGY 1 cut(s) 88
Cfr13I GGNCC 1 cut(s) 86
CviAII CATG 1 cut(s) 193
CviJI RGCY 1 cut(s) 49
CviKI_1 RGCY 1 cut(s) 49
DpnI GATC 3 cut(s) 8, 26, 69
DpnII GATC 3 cut(s) 6, 24, 67
Eam1104I CTCTTC 2 cut(s) 53, 74
EarI CTCTTC 2 cut(s) 53, 74
EciI GGCGGA 1 cut(s) 107
Eco130I CCWWGG 1 cut(s) 135
Eco31I GGTCTC 1 cut(s) 103
Eco47I GGWCC 1 cut(s) 86
Eco57I CTGAAG 1 cut(s) 71
EcoT14I CCWWGG 1 cut(s) 135
ErhI CCWWGG 1 cut(s) 135
FaeI CATG 1 cut(s) 196
FaiI YATR 1 cut(s) 194
FaqI GGGAC 1 cut(s) 99
FatI CATG 1 cut(s) 192
Fnu4HI GCNGC 1 cut(s) 33
FokI GGATG 1 cut(s) 197
Fsp4HI GCNGC 1 cut(s) 33
GluI GCNGC 1 cut(s) 33
HapII CCGG 2 cut(s) 43, 89
Hin1II CATG 1 cut(s) 196
HincII GTYRAC 2 cut(s) 39, 132
HindII GTYRAC 2 cut(s) 39, 132
HinfI GANTC 1 cut(s) 17
HpaII CCGG 2 cut(s) 43, 89
HphI GGTGA 2 cut(s) 133, 208
Hpy166II GTNNAC 2 cut(s) 39, 132
Hpy188I TCNGA 1 cut(s) 22
Hpy8I GTNNAC 2 cut(s) 39, 132
Hpy99I CGWCG 3 cut(s) 166, 178, 181
HpyAV CCTTC 1 cut(s) 46
HpyCH4III ACNGT 1 cut(s) 202
HpyCH4V TGCA 1 cut(s) 12
Hsp92II CATG 1 cut(s) 196
Kzo9I GATC 3 cut(s) 6, 24, 67
LmnI GCTCC 1 cut(s) 102
LpnPI CCDG 2 cut(s) 56, 102
MaeIII GTNAC 2 cut(s) 14, 196
MalI GATC 3 cut(s) 8, 26, 69
MboI GATC 3 cut(s) 6, 24, 67
MboII GAAGA 3 cut(s) 70, 77, 91
MflI RGATCY 1 cut(s) 6
MluCI AATT 1 cut(s) 208
MlyI GAGTC 1 cut(s) 11
MnlI CCTC 6 cut(s) 54, 75, 90, 112, 117, 133
MspI CCGG 2 cut(s) 43, 89
MspR9I CCNGG 1 cut(s) 43
NciI CCSGG 1 cut(s) 43
NdeII GATC 3 cut(s) 6, 24, 67
NlaIII CATG 1 cut(s) 196
NlaIV GGNNCC 1 cut(s) 87
NmuCI GTSAC 2 cut(s) 14, 196
PcsI WCGNNNNNNNCGW 2 cut(s) 158, 170
PkrI GCNGC 1 cut(s) 34
PleI GAGTC 1 cut(s) 11
PpsI GAGTC 1 cut(s) 11
PspN4I GGNNCC 1 cut(s) 87
PspPI GGNCC 1 cut(s) 86
PstI CTGCAG 1 cut(s) 14
PsuI RGATCY 1 cut(s) 6
SatI GCNGC 1 cut(s) 33
Sau3AI GATC 3 cut(s) 6, 24, 67
Sau96I GGNCC 1 cut(s) 86
SchI GAGTC 1 cut(s) 11
ScrFI CCNGG 1 cut(s) 43
SetI ASST 4 cut(s) 101, 123, 128, 137
SfcI CTRYAG 1 cut(s) 10
SinI GGWCC 1 cut(s) 86
Sse9I AATT 1 cut(s) 208
SsiI CCGC 3 cut(s) 32, 76, 92
StyD4I CCNGG 1 cut(s) 41
StyI CCWWGG 1 cut(s) 135
TaaI ACNGT 1 cut(s) 202
TaqI TCGA 1 cut(s) 173
TasI AATT 1 cut(s) 208
TauI GCSGC 1 cut(s) 35
TscAI CASTG 2 cut(s) 19, 34
TseFI GTSAC 2 cut(s) 14, 196
Tsp45I GTSAC 2 cut(s) 14, 196
TspRI CASTG 2 cut(s) 19, 34
VpaK11BI GGWCC 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.