Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0015745

Physical Location & Seq

Genomic Coordinates Reverse (-)

50711478 .. 50719426

Gene Structure 7949 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00256330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGATGAATGGAGACCCCGAAATGGGGGATATACGATTCTTGACGAAATTCCTAAATATGATCACCCGGATTACTTTGCGGTCAAGATGTATCATGAGGTTGATAGGATGGTTAGAGGGTTAAACCAGAACTACGGTGGAAGGAGAATAGATTATTGGTACAGTATAGGGAATGAGGATGATGGTATAACTAAGATTAAGATAGACAAGGACGCAATTACTATGGCGTCGGGGCAGGAGATTAAAAGATCTATGGACGCCGATTTCCCCGACACTTTCTCTTCTCTCAATACGATTATGACGATATTTGATGGTGGTGATGGAAAGATAGTGGTAAGAACAATTCTAATTCATCACAAATTCTGGTTATTTTCGATTAATTCGGGTCTGGATGTTACAAGAGCAGCCAAGAAAGAGCTTGGGATTGTGATTAGAGAATGGAATGGTGATGGCAGCATACCTAGAAGAGAGGAAGAGTGCAGGTTGATTATAAGAAGGATGGGGGCACAATCTAGAGATGATGATTCTGCAGATGAAGATTATAGGCCATATTTTGAGGATGATGAATATGGGGATTATGATTGGGATGACGATTGGGTGGGAGATATGGAAGATGAATTTGATGTCTTTGGTGAGAGTATTGGACCAAGTACACAAGTAAAAGCTGCTGTTGGAAGTAGTGTTGAGGAAGGGGTACCGAAAAAAAGGGATGAGAAGAAGGCTACCACAGCTAGAGCTGCTCCTACAAATGCAAGAGCTGCTTCTACAAATGCAAGAGCTACTCATTCTACAAATACAAGAGTTGCTACTGTTTCAACCTTAAAAACTGCTCCTCGCTTCAAGCTCAAGAGGTGCTCCTTCAAGCTTGAAAGCAACTATTGCAAAAGGCACAGCTCTTATTTCAAGCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_3 NB-ARC TIR

Protein Analysis

303

Amino Acids

34.64

Weight (kDa)

5.53

Isoelectric Point (pI)

33.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015745)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0495271
rosa_laevigata	RLG00000029896 RLG00000035709
rosa_multiflora	Rmu_co8111490.1_g000001
rosa_roxburghii	Rroxscaffold_3G00229120 Rroxscaffold_3G00256330
rosa_samantha	Rh2AG271500 Rh2CG211000 Rh2DG214000 Rh4DG098900 Rh7AG293800 Rh7AG334500 Rh7AG373900 Rh7CG352200 Rh7CG392200 Rh7DG451900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	491
Acc36I	ACCTGC	1 cut(s)	471
Acc65I	GGTACC	1 cut(s)	694
AccB1I	GGYRCC	1 cut(s)	694
AciI	CCGC	1 cut(s)	80
AcsI	RAATTY	3 cut(s)	48, 359, 617
AcyI	GRCGYC	2 cut(s)	227, 258
AfaI	GTAC	3 cut(s)	161, 652, 696
AfiI	CCNNNNNNNGG	3 cut(s)	23, 24, 25
AgsI	TTSAA	5 cut(s)	816, 841, 862, 869, 904
AjuI	GAANNNNNNNTTGG	2 cut(s)	139, 171
Alw21I	GWGCWC	1 cut(s)	857
Alw26I	GTCTC	1 cut(s)	7
AoxI	GGCC	1 cut(s)	545
ApeKI	GCWGC	5 cut(s)	404, 453, 665, 737, 758
ApoI	RAATTY	3 cut(s)	48, 359, 617
AseI	ATTAAT	1 cut(s)	378
Asp718I	GGTACC	1 cut(s)	694
AspS9I	GGNCC	1 cut(s)	644
AsuC2I	CCSGG	1 cut(s)	68
AsuHPI	GGTGA	4 cut(s)	56, 329, 458, 644
AvaII	GGWCC	1 cut(s)	644
BaeGI	GKGCMC	1 cut(s)	508
BanI	GGYRCC	1 cut(s)	694
Bbv12I	GWGCWC	1 cut(s)	857
BbvI	GCAGC	5 cut(s)	416, 465, 652, 724, 745
BccI	CCATC	6 cut(s)	103, 176, 305, 314, 443, 493
BclI	TGATCA	1 cut(s)	61
BcnI	CCSGG	1 cut(s)	68
BcoDI	GTCTC	1 cut(s)	7
BfaI	CTAG	4 cut(s)	462, 513, 732, 910
BfmI	CTRYAG	1 cut(s)	528
BfuAI	ACCTGC	1 cut(s)	471
BglII	AGATCT	1 cut(s)	248
BisI	GCNGC	5 cut(s)	405, 454, 666, 738, 759
BlsI	GCNGC	5 cut(s)	406, 455, 667, 739, 760
Bme1390I	CCNGG	1 cut(s)	68
Bme18I	GGWCC	1 cut(s)	644
BmgT120I	GGNCC	1 cut(s)	644
BmiI	GGNNCC	1 cut(s)	696
BmrFI	CCNGG	1 cut(s)	68
BpuEI	CTTGAG	1 cut(s)	830
BpuMI	CCSGG	1 cut(s)	68
BsaHI	GRCGYC	2 cut(s)	227, 258
BsaI	GGTCTC	1 cut(s)	7
Bsc4I	CCNNNNNNNGG	3 cut(s)	23, 24, 25
BseGI	GGATG	8 cut(s)	10, 114, 184, 397, 504, 565, 592, 715
BseLI	CCNNNNNNNGG	3 cut(s)	23, 24, 25
BseRI	GAGGAG	1 cut(s)	822
BseSI	GKGCMC	1 cut(s)	508
BseXI	GCAGC	5 cut(s)	416, 465, 652, 724, 745
BsgI	GTGCAG	1 cut(s)	499
BshFI	GGCC	1 cut(s)	547
BshNI	GGYRCC	1 cut(s)	694
BsiHKAI	GWGCWC	1 cut(s)	857
BsiSI	CCGG	1 cut(s)	68
BslI	CCNNNNNNNGG	3 cut(s)	23, 24, 25
BsmAI	GTCTC	1 cut(s)	7
BsnI	GGCC	1 cut(s)	547
Bso31I	GGTCTC	1 cut(s)	7
Bsp1286I	GDGCHC	2 cut(s)	508, 857
Bsp143I	GATC	2 cut(s)	61, 248
BspACI	CCGC	1 cut(s)	80
BspANI	GGCC	1 cut(s)	547
BspHI	TCATGA	1 cut(s)	94
BspLI	GGNNCC	1 cut(s)	696
BspMAI	CTGCAG	1 cut(s)	532
BspMI	ACCTGC	1 cut(s)	471
BspT107I	GGYRCC	1 cut(s)	694
BspTNI	GGTCTC	1 cut(s)	7
BssMI	GATC	2 cut(s)	61, 248
BssNI	GRCGYC	2 cut(s)	227, 258
Bst4CI	ACNGT	3 cut(s)	137, 164, 811
Bst6I	CTCTTC	3 cut(s)	286, 460, 468
BstACI	GRCGYC	2 cut(s)	227, 258
BstAPI	GCANNNNNTGC	2 cut(s)	758, 879
BstDEI	CTNAG	1 cut(s)	192
BstF5I	GGATG	8 cut(s)	10, 114, 184, 397, 504, 565, 592, 715
BstKTI	GATC	2 cut(s)	64, 251
BstMAI	GTCTC	1 cut(s)	7
BstMBI	GATC	2 cut(s)	61, 248
BstMWI	GCNNNNNNNGC	4 cut(s)	728, 737, 758, 879
BstSCI	CCNGG	1 cut(s)	66
BstSFI	CTRYAG	1 cut(s)	528
BstSLI	GKGCMC	1 cut(s)	508
BstV1I	GCAGC	5 cut(s)	416, 465, 652, 724, 745
BstX2I	RGATCY	1 cut(s)	248
BstYI	RGATCY	1 cut(s)	248
BsuRI	GGCC	1 cut(s)	547
BtsCI	GGATG	8 cut(s)	10, 114, 184, 397, 504, 565, 592, 715
BveI	ACCTGC	1 cut(s)	471
CciI	TCATGA	1 cut(s)	94
Cfr13I	GGNCC	1 cut(s)	644
CseI	GACGC	3 cut(s)	216, 221, 266
Csp6I	GTAC	3 cut(s)	160, 651, 695
CviAII	CATG	1 cut(s)	95
CviQI	GTAC	3 cut(s)	160, 651, 695
DdeI	CTNAG	1 cut(s)	192
DpnI	GATC	2 cut(s)	63, 250
DpnII	GATC	2 cut(s)	61, 248
Eam1104I	CTCTTC	3 cut(s)	286, 460, 468
EarI	CTCTTC	3 cut(s)	286, 460, 468
Eco31I	GGTCTC	1 cut(s)	7
Eco47I	GGWCC	1 cut(s)	644
FaeI	CATG	1 cut(s)	98
FalI	AAGNNNNNCTT	2 cut(s)	745, 777
FatI	CATG	1 cut(s)	94
FbaI	TGATCA	1 cut(s)	61
Fnu4HI	GCNGC	5 cut(s)	405, 454, 666, 738, 759
FokI	GGATG	8 cut(s)	17, 121, 191, 404, 511, 572, 599, 722
Fsp4HI	GCNGC	5 cut(s)	405, 454, 666, 738, 759
FspBI	CTAG	4 cut(s)	462, 513, 732, 910
GluI	GCNGC	5 cut(s)	405, 454, 666, 738, 759
HaeIII	GGCC	1 cut(s)	547
HapII	CCGG	1 cut(s)	68
HgaI	GACGC	3 cut(s)	216, 221, 266
Hin1I	GRCGYC	2 cut(s)	227, 258
Hin1II	CATG	1 cut(s)	98
HindIII	AAGCTT	1 cut(s)	863
HinfI	GANTC	2 cut(s)	37, 524
HpaII	CCGG	1 cut(s)	68
HphI	GGTGA	4 cut(s)	56, 329, 458, 644
Hpy166II	GTNNAC	1 cut(s)	653
Hpy188III	TCNNGA	6 cut(s)	41, 85, 95, 389, 513, 847
Hpy8I	GTNNAC	1 cut(s)	653
Hpy99I	CGWCG	1 cut(s)	232
HpyAV	CCTTC	5 cut(s)	135, 489, 683, 712, 868
HpyCH4III	ACNGT	3 cut(s)	137, 164, 811
HpyCH4V	TGCA	5 cut(s)	480, 530, 752, 773, 882
HpyF10VI	GCNNNNNNNGC	4 cut(s)	728, 737, 758, 879
HpyF3I	CTNAG	1 cut(s)	192
Hsp92I	GRCGYC	2 cut(s)	227, 258
Hsp92II	CATG	1 cut(s)	98
KpnI	GGTACC	1 cut(s)	698
Ksp22I	TGATCA	1 cut(s)	61
Kzo9I	GATC	2 cut(s)	61, 248
LmnI	GCTCC	3 cut(s)	745, 835, 860
LpnPI	CCDG	6 cut(s)	81, 140, 221, 349, 374, 466
Lsp1109I	GCAGC	5 cut(s)	416, 465, 652, 724, 745
MaeI	CTAG	4 cut(s)	462, 513, 732, 910
MaeIII	GTNAC	1 cut(s)	394
MalI	GATC	2 cut(s)	63, 250
MboI	GATC	2 cut(s)	61, 248
MboII	GAAGA	6 cut(s)	273, 477, 485, 548, 623, 727
MflI	RGATCY	1 cut(s)	248
MhlI	GDGCHC	2 cut(s)	508, 857
MluCI	AATT	7 cut(s)	48, 216, 342, 348, 359, 379, 617
MmeI	TCCRAC	1 cut(s)	652
MnlI	CCTC	8 cut(s)	91, 110, 169, 463, 550, 679, 843, 843
MseI	TTAA	5 cut(s)	122, 198, 243, 378, 821
MspI	CCGG	1 cut(s)	68
MspR9I	CCNGG	1 cut(s)	68
MwoI	GCNNNNNNNGC	4 cut(s)	728, 737, 758, 879
NciI	CCSGG	1 cut(s)	68
NdeII	GATC	2 cut(s)	61, 248
NlaIII	CATG	1 cut(s)	98
NlaIV	GGNNCC	1 cut(s)	696
PagI	TCATGA	1 cut(s)	94
PcsI	WCGNNNNNNNCGW	1 cut(s)	299
PfeI	GAWTC	2 cut(s)	37, 524
PkrI	GCNGC	5 cut(s)	406, 455, 667, 739, 760
PshBI	ATTAAT	1 cut(s)	378
PsiI	TTATAA	1 cut(s)	491
PspN4I	GGNNCC	1 cut(s)	696
PspPI	GGNCC	1 cut(s)	644
PstI	CTGCAG	1 cut(s)	532
PsuI	RGATCY	1 cut(s)	248
RsaI	GTAC	3 cut(s)	161, 652, 696
RsaNI	GTAC	3 cut(s)	160, 651, 695
SaqAI	TTAA	5 cut(s)	122, 198, 243, 378, 821
SatI	GCNGC	5 cut(s)	405, 454, 666, 738, 759
Sau3AI	GATC	2 cut(s)	61, 248
Sau96I	GGNCC	1 cut(s)	644
ScrFI	CCNGG	1 cut(s)	68
SduI	GDGCHC	2 cut(s)	508, 857
SfcI	CTRYAG	1 cut(s)	528
SinI	GGWCC	1 cut(s)	644
SmlI	CTYRAG	1 cut(s)	845
SmoI	CTYRAG	1 cut(s)	845
Sse9I	AATT	7 cut(s)	48, 216, 342, 348, 359, 379, 617
SsiI	CCGC	1 cut(s)	80
SspMI	CTAG	4 cut(s)	462, 513, 732, 910
StyD4I	CCNGG	1 cut(s)	66
TaaI	ACNGT	3 cut(s)	137, 164, 811
TaqI	TCGA	1 cut(s)	374
TasI	AATT	7 cut(s)	48, 216, 342, 348, 359, 379, 617
TatI	WGTACW	1 cut(s)	650
TfiI	GAWTC	2 cut(s)	37, 524
Tru1I	TTAA	5 cut(s)	122, 198, 243, 378, 821
Tru9I	TTAA	5 cut(s)	122, 198, 243, 378, 821
TseI	GCWGC	5 cut(s)	404, 453, 665, 737, 758
TspDTI	ATGAA	5 cut(s)	21, 341, 549, 579, 630
VpaK11BI	GGWCC	1 cut(s)	644
VspI	ATTAAT	1 cut(s)	378
XapI	RAATTY	3 cut(s)	48, 359, 617
XbaI	TCTAGA	1 cut(s)	512
XcmI	CCANNNNNNNNNTGG	1 cut(s)	134
XspI	CTAG	4 cut(s)	462, 513, 732, 910

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.