Rh7AG373900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0015745
Physical Location & Seq
Reverse (-)
48300484 .. 48310626
10143 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG373900.1

Sequence Viewer

Length: 195 bp
ATGGATGAATGGAGACCCCGAAATGGGGGGGATACAGTTGCTGATGAAATTCCTAAATATGGGTTTCTCAGAGAGAGAGACACAGAGGCCCCAGCTTTTGCGATCGCCGCCGTTGAGCTCGAACGGAGGACTCAGGTATGCATCAACGATTCACCACCATACAGCACAGATCAGGGATTTGAATTCGGCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

64

Amino Acids

7.25

Weight (kDa)

4.36

Isoelectric Point (pI)

36.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 108
AcsI RAATTY 2 cut(s) 48, 182
AfiI CCNNNNNNNGG 4 cut(s) 23, 24, 25, 59
AgsI TTSAA 1 cut(s) 182
AluBI AGCT 2 cut(s) 95, 118
AluI AGCT 2 cut(s) 95, 118
Alw21I GWGCWC 1 cut(s) 120
Alw26I GTCTC 2 cut(s) 7, 72
AlwNI CAGNNNCTG 1 cut(s) 41
AoxI GGCC 1 cut(s) 87
ApoI RAATTY 2 cut(s) 48, 182
AsiSI GCGATCGC 1 cut(s) 105
AspS9I GGNCC 1 cut(s) 88
AsuHPI GGTGA 1 cut(s) 144
BanII GRGCYC 1 cut(s) 120
Bbv12I GWGCWC 1 cut(s) 120
BceAI ACGGC 1 cut(s) 95
BciVI GTATCC 1 cut(s) 25
BcoDI GTCTC 2 cut(s) 7, 72
BfuI GTATCC 1 cut(s) 25
BisI GCNGC 1 cut(s) 108
BlsI GCNGC 1 cut(s) 109
BmgT120I GGNCC 1 cut(s) 88
BmiI GGNNCC 1 cut(s) 90
BmsI GCATC 1 cut(s) 150
BsaI GGTCTC 1 cut(s) 7
Bsc4I CCNNNNNNNGG 4 cut(s) 23, 24, 25, 59
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 4 cut(s) 23, 24, 25, 59
BseMII CTCAG 2 cut(s) 82, 146
BseYI CCCAGC 1 cut(s) 91
Bsh1285I CGRYCG 1 cut(s) 105
BshFI GGCC 1 cut(s) 89
BsiEI CGRYCG 1 cut(s) 105
BsiHKAI GWGCWC 1 cut(s) 120
BslI CCNNNNNNNGG 4 cut(s) 23, 24, 25, 59
BsmAI GTCTC 2 cut(s) 7, 72
BsnI GGCC 1 cut(s) 89
Bso31I GGTCTC 1 cut(s) 7
Bsp1286I GDGCHC 1 cut(s) 120
Bsp143I GATC 2 cut(s) 102, 169
BspACI CCGC 1 cut(s) 108
BspANI GGCC 1 cut(s) 89
BspCNI CTCAG 2 cut(s) 81, 145
BspLI GGNNCC 1 cut(s) 90
BspTNI GGTCTC 1 cut(s) 7
BssMI GATC 2 cut(s) 102, 169
Bst4CI ACNGT 1 cut(s) 37
BstDEI CTNAG 2 cut(s) 68, 132
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 2 cut(s) 105, 172
BstMAI GTCTC 2 cut(s) 7, 72
BstMBI GATC 2 cut(s) 102, 169
BstMCI CGRYCG 1 cut(s) 105
BstMWI GCNNNNNNNGC 1 cut(s) 107
BsuI GTATCC 1 cut(s) 25
BsuRI GGCC 1 cut(s) 89
BtsCI GGATG 1 cut(s) 10
CaiI CAGNNNCTG 1 cut(s) 41
Cfr13I GGNCC 1 cut(s) 88
CviJI RGCY 3 cut(s) 89, 95, 118
CviKI_1 RGCY 3 cut(s) 89, 95, 118
DdeI CTNAG 2 cut(s) 68, 132
DpnI GATC 2 cut(s) 104, 171
DpnII GATC 2 cut(s) 102, 169
Ecl136II GAGCTC 1 cut(s) 118
Eco24I GRGCYC 1 cut(s) 120
Eco31I GGTCTC 1 cut(s) 7
Eco53kI GAGCTC 1 cut(s) 118
EcoICRI GAGCTC 1 cut(s) 118
EcoO109I RGGNCCY 1 cut(s) 88
EcoRI GAATTC 1 cut(s) 182
EcoT22I ATGCAT 1 cut(s) 143
EcoT38I GRGCYC 1 cut(s) 120
FaiI YATR 3 cut(s) 60, 139, 160
Fnu4HI GCNGC 1 cut(s) 108
FokI GGATG 1 cut(s) 17
FriOI GRGCYC 1 cut(s) 120
Fsp4HI GCNGC 1 cut(s) 108
GluI GCNGC 1 cut(s) 108
GsaI CCCAGC 1 cut(s) 95
HaeIII GGCC 1 cut(s) 89
HinfI GANTC 2 cut(s) 130, 149
HphI GGTGA 1 cut(s) 144
Hpy188I TCNGA 1 cut(s) 71
HpyCH4III ACNGT 1 cut(s) 37
HpyCH4V TGCA 1 cut(s) 141
HpyF10VI GCNNNNNNNGC 1 cut(s) 107
HpyF3I CTNAG 2 cut(s) 68, 132
Kzo9I GATC 2 cut(s) 102, 169
LpnPI CCDG 3 cut(s) 105, 119, 158
LweI GCATC 1 cut(s) 150
MalI GATC 2 cut(s) 104, 171
MboI GATC 2 cut(s) 102, 169
MhlI GDGCHC 1 cut(s) 120
MluCI AATT 2 cut(s) 48, 182
MlyI GAGTC 1 cut(s) 124
MnlI CCTC 2 cut(s) 79, 120
Mph1103I ATGCAT 1 cut(s) 143
MwoI GCNNNNNNNGC 1 cut(s) 107
NdeII GATC 2 cut(s) 102, 169
NlaIV GGNNCC 1 cut(s) 90
NsiI ATGCAT 1 cut(s) 143
PfeI GAWTC 1 cut(s) 149
PkrI GCNGC 1 cut(s) 109
Ple19I CGATCG 1 cut(s) 105
PleI GAGTC 1 cut(s) 124
PpsI GAGTC 1 cut(s) 124
Psp124BI GAGCTC 1 cut(s) 120
PspFI CCCAGC 1 cut(s) 91
PspN4I GGNNCC 1 cut(s) 90
PspPI GGNCC 1 cut(s) 88
PstNI CAGNNNCTG 1 cut(s) 41
PvuI CGATCG 1 cut(s) 105
RgaI GCGATCGC 1 cut(s) 105
SacI GAGCTC 1 cut(s) 120
SatI GCNGC 1 cut(s) 108
Sau3AI GATC 2 cut(s) 102, 169
Sau96I GGNCC 1 cut(s) 88
SchI GAGTC 1 cut(s) 124
SduI GDGCHC 1 cut(s) 120
SetI ASST 3 cut(s) 97, 120, 138
SfaAI GCGATCGC 1 cut(s) 105
SfaNI GCATC 1 cut(s) 150
SgeI CNNG 5 cut(s) 30, 104, 131, 146, 185
SgfI GCGATCGC 1 cut(s) 105
Sse9I AATT 2 cut(s) 48, 182
SsiI CCGC 1 cut(s) 108
SstI GAGCTC 1 cut(s) 120
TaaI ACNGT 1 cut(s) 37
TaqI TCGA 1 cut(s) 120
TasI AATT 2 cut(s) 48, 182
TauI GCSGC 1 cut(s) 110
TfiI GAWTC 1 cut(s) 149
TspDTI ATGAA 2 cut(s) 21, 60
TspGWI ACGGA 1 cut(s) 139
XapI RAATTY 2 cut(s) 48, 182
Zsp2I ATGCAT 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.