RLG00000030731

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0014784
Physical Location & Seq
Forward (+)
66613928 .. 66615291
1364 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030731

Sequence Viewer

Length: 849 bp
ATGGCAGCGGTGGATGGCCTCGTCGAAGAGCCGGAGACCATGACGACTTTGTTGTGTAGATCGAGGCATGTCTCCAAGTCGTCACTGGCGATTGTGAGGTATGCAACGACAGCGGTTTGTCAGTCGCGCCTTGCCTTTAGGTCGTCGCCGGCGAGCAACGGCATCGAAGGTGAAGATGGTGGTGCAAGATCTGATAGCGCCGTGCTGGTACTCGGGGGAATCAAAGGCGGAGACAACGACGTGAAGGCGGTGGAACTCGAATTGGAGCAGCAGAGAAATAGAAGAGGAGCTTTCTCGTTGAAATTGGCGAGGAGCCTGACCTGCCGCCTCGTCCAAACGGCGTCACCGACGTCTTCACCGTCGGAGAAGAGCAAGCAGCGGCAATCGAGCTCGGGTCGAGCGGCTCATGTGATGGCTATGGCTTTGGCTATTTCTCCAACCTTTTGTTGCAGGCCATCAAACGGTTCAAAGATTGTCAAATCGTGCTCCAATATTAGTAGTGATAGCAAAACTTACACATCCCAAATCGGCACGAAGAAGCGATGCTTGAGGTGCAACACCCTCTACACAGACGAGGATAATTCCCCCACTGCTTGCTCCTTCCATGGCCACAGTACTGGAGAGAAGGGATTATTTGCATTGGCTCCACCACACCAAGGAATTGATGGAGAGTGGAGTGACAGGTCTGGAGTAATTGTGTATAGATGGAATGAGAAGAACAAGAGACCAAACACTGGAAGTGGGAATTGGAAGAAACGATGGAGTTGTTGTCAAGAGTATGATCAGGATGCCACACCCTGTCAAAGAGGATGGCATGTTTCCTATGATGATGGCTTCACTCTATATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

283

Amino Acids

30.72

Weight (kDa)

8.99

Isoelectric Point (pI)

62.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014784)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g00910
malus_domestica MD02G1313500.v1.1
prunus_persica Prupe.2G012100_v2.0.a1 Prupe.2G012100_v2.0.a1
pyrus_communis pycom02g26300
rosa_chinensis RchiOBHm_Chr1g0315801
rosa_laevigata RLG00000030731
rosa_multiflora Rmu_co8267121.1_g000001 Rmu_sc0009816.1_g000004
rosa_roxburghii Rroxscaffold_4G00331430
rosa_rugosa Rorug01G0005600 Rorug01G0005700
rosa_samantha Rh1AG016600 Rh1BG009000 Rh1CG013900 Rh1DG009700
rosa_wichuraiana Rw1G000980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 353
Acc36I ACCTGC 1 cut(s) 329
AccB7I CCANNNNNTGG 1 cut(s) 734
AccBSI CCGCTC 1 cut(s) 401
AccII CGCG 1 cut(s) 127
AciI CCGC 7 cut(s) 8, 113, 228, 248, 325, 379, 401
AcoI YGGCCR 1 cut(s) 607
AcyI GRCGYC 2 cut(s) 341, 350
AfaI GTAC 2 cut(s) 210, 616
AfiI CCNNNNNNNGG 3 cut(s) 461, 656, 734
AgsI TTSAA 2 cut(s) 301, 468
AjiI CACGTC 1 cut(s) 241
AjuI GAANNNNNNNTTGG 2 cut(s) 730, 762
AluBI AGCT 2 cut(s) 290, 390
AluI AGCT 2 cut(s) 290, 390
Alw21I GWGCWC 2 cut(s) 392, 488
Alw26I GTCTC 4 cut(s) 29, 76, 225, 718
Ama87I CYCGRG 2 cut(s) 212, 391
AoxI GGCC 3 cut(s) 16, 452, 607
ApeKI GCWGC 3 cut(s) 5, 268, 376
AspLEI GCGC 2 cut(s) 129, 200
AsuHPI GGTGA 3 cut(s) 182, 336, 348
AvaI CYCGRG 2 cut(s) 212, 391
BalI TGGCCA 1 cut(s) 609
BanII GRGCYC 1 cut(s) 392
BbsI GAAGAC 1 cut(s) 345
Bbv12I GWGCWC 2 cut(s) 392, 488
BbvI GCAGC 3 cut(s) 17, 280, 388
BccI CCATC 9 cut(s) 8, 170, 406, 463, 659, 699, 753, 804, 824
BceAI ACGGC 3 cut(s) 175, 185, 354
BcgI CGANNNNNNTGC 2 cut(s) 145, 179
BclI TGATCA 1 cut(s) 781
BcoDI GTCTC 4 cut(s) 29, 76, 225, 718
BfoI RGCGCY 1 cut(s) 201
BfuAI ACCTGC 1 cut(s) 329
BglII AGATCT 1 cut(s) 188
BisI GCNGC 6 cut(s) 6, 269, 325, 377, 380, 402
BlsI GCNGC 6 cut(s) 7, 270, 326, 378, 381, 403
BmcAI AGTACT 1 cut(s) 616
BmeT110I CYCGRG 2 cut(s) 212, 391
BmgBI CACGTC 1 cut(s) 241
BmiI GGNNCC 2 cut(s) 314, 645
BmsI GCATC 3 cut(s) 171, 533, 778
BpiI GAAGAC 1 cut(s) 345
BpmI CTGGAG 2 cut(s) 639, 708
BpuEI CTTGAG 1 cut(s) 568
BsaHI GRCGYC 2 cut(s) 341, 350
BsaI GGTCTC 2 cut(s) 29, 718
BsaJI CCNNGG 2 cut(s) 604, 655
BsaXI ACNNNNNCTCC 4 cut(s) 681, 711, 754, 784
Bsc4I CCNNNNNNNGG 3 cut(s) 461, 656, 734
Bse118I RCCGGY 1 cut(s) 148
Bse1I ACTGG 3 cut(s) 90, 622, 739
BseDI CCNNGG 2 cut(s) 604, 655
BseGI GGATG 4 cut(s) 19, 518, 793, 815
BseLI CCNNNNNNNGG 3 cut(s) 461, 656, 734
BseNI ACTGG 3 cut(s) 90, 622, 739
BseRI GAGGAG 2 cut(s) 300, 325
BseXI GCAGC 3 cut(s) 17, 280, 388
Bsh1236I CGCG 1 cut(s) 127
BshFI GGCC 3 cut(s) 18, 454, 609
BsiHKAI GWGCWC 2 cut(s) 392, 488
BsiHKCI CYCGRG 2 cut(s) 212, 391
BsiSI CCGG 2 cut(s) 32, 149
BslI CCNNNNNNNGG 3 cut(s) 461, 656, 734
BsmAI GTCTC 4 cut(s) 29, 76, 225, 718
BsnI GGCC 3 cut(s) 18, 454, 609
Bso31I GGTCTC 2 cut(s) 29, 718
BsoBI CYCGRG 2 cut(s) 212, 391
Bsp1286I GDGCHC 2 cut(s) 392, 488
Bsp143I GATC 3 cut(s) 59, 188, 781
Bsp19I CCATGG 1 cut(s) 604
BspACI CCGC 7 cut(s) 8, 113, 228, 248, 325, 379, 401
BspANI GGCC 3 cut(s) 18, 454, 609
BspFNI CGCG 1 cut(s) 127
BspLI GGNNCC 2 cut(s) 314, 645
BspMI ACCTGC 1 cut(s) 329
BspQI GCTCTTC 2 cut(s) 21, 362
BspTNI GGTCTC 2 cut(s) 29, 718
BsrBI CCGCTC 1 cut(s) 401
BsrFI RCCGGY 1 cut(s) 148
BsrI ACTGG 3 cut(s) 90, 622, 739
BssAI RCCGGY 1 cut(s) 148
BssECI CCNNGG 2 cut(s) 604, 655
BssMI GATC 3 cut(s) 59, 188, 781
BssNI GRCGYC 2 cut(s) 341, 350
BssT1I CCWWGG 2 cut(s) 604, 655
Bst4CI ACNGT 3 cut(s) 360, 464, 614
Bst6I CTCTTC 3 cut(s) 21, 277, 362
BstACI GRCGYC 2 cut(s) 341, 350
BstC8I GCNNGC 5 cut(s) 150, 154, 374, 452, 595
BstDSI CCRYGG 1 cut(s) 604
BstF5I GGATG 4 cut(s) 19, 518, 793, 815
BstFNI CGCG 1 cut(s) 127
BstH2I RGCGCY 1 cut(s) 201
BstHHI GCGC 2 cut(s) 129, 200
BstKTI GATC 3 cut(s) 62, 191, 784
BstMAI GTCTC 4 cut(s) 29, 76, 225, 718
BstMBI GATC 3 cut(s) 59, 188, 781
BstMWI GCNNNNNNNGC 3 cut(s) 110, 321, 552
BstNSI RCATGY 2 cut(s) 71, 818
BstUI CGCG 1 cut(s) 127
BstV1I GCAGC 3 cut(s) 17, 280, 388
BstV2I GAAGAC 1 cut(s) 345
BstX2I RGATCY 1 cut(s) 188
BstXI CCANNNNNNTGG 1 cut(s) 617
BstYI RGATCY 1 cut(s) 188
BsuRI GGCC 3 cut(s) 18, 454, 609
BtgI CCRYGG 1 cut(s) 604
BtgZI GCGATG 1 cut(s) 556
BtrI CACGTC 1 cut(s) 241
BtsCI GGATG 4 cut(s) 19, 518, 793, 815
BtsI GCAGTG 1 cut(s) 588
BtsIMutI CAGTG 3 cut(s) 83, 588, 732
BveI ACCTGC 1 cut(s) 329
Cac8I GCNNGC 5 cut(s) 150, 154, 374, 452, 595
CfoI GCGC 2 cut(s) 129, 200
Cfr10I RCCGGY 1 cut(s) 148
CseI GACGC 1 cut(s) 330
Csp6I GTAC 2 cut(s) 209, 615
CviAII CATG 5 cut(s) 40, 68, 407, 605, 815
CviQI GTAC 2 cut(s) 209, 615
DpnI GATC 3 cut(s) 61, 190, 783
DpnII GATC 3 cut(s) 59, 188, 781
EaeI YGGCCR 1 cut(s) 607
Eam1104I CTCTTC 3 cut(s) 21, 277, 362
EarI CTCTTC 3 cut(s) 21, 277, 362
EciI GGCGGA 1 cut(s) 243
Ecl136II GAGCTC 1 cut(s) 390
Eco130I CCWWGG 2 cut(s) 604, 655
Eco24I GRGCYC 1 cut(s) 392
Eco31I GGTCTC 2 cut(s) 29, 718
Eco53kI GAGCTC 1 cut(s) 390
Eco88I CYCGRG 2 cut(s) 212, 391
EcoICRI GAGCTC 1 cut(s) 390
EcoT14I CCWWGG 2 cut(s) 604, 655
EcoT38I GRGCYC 1 cut(s) 392
ErhI CCWWGG 2 cut(s) 604, 655
FaeI CATG 5 cut(s) 43, 71, 410, 608, 818
FalI AAGNNNNNCTT 4 cut(s) 274, 306, 530, 562
FatI CATG 5 cut(s) 39, 67, 406, 604, 814
FbaI TGATCA 1 cut(s) 781
Fnu4HI GCNGC 6 cut(s) 6, 269, 325, 377, 380, 402
FokI GGATG 4 cut(s) 26, 505, 800, 822
FriOI GRGCYC 1 cut(s) 392
Fsp4HI GCNGC 6 cut(s) 6, 269, 325, 377, 380, 402
GlaI GCGC 2 cut(s) 128, 199
GluI GCNGC 6 cut(s) 6, 269, 325, 377, 380, 402
GsuI CTGGAG 2 cut(s) 639, 708
HaeII RGCGCY 1 cut(s) 201
HaeIII GGCC 3 cut(s) 18, 454, 609
HapII CCGG 2 cut(s) 32, 149
HgaI GACGC 1 cut(s) 330
HhaI GCGC 2 cut(s) 129, 200
Hin1I GRCGYC 2 cut(s) 341, 350
Hin1II CATG 5 cut(s) 43, 71, 410, 608, 818
Hin6I GCGC 2 cut(s) 127, 198
HinP1I GCGC 2 cut(s) 127, 198
HinfI GANTC 1 cut(s) 219
HpaII CCGG 2 cut(s) 32, 149
HphI GGTGA 3 cut(s) 182, 336, 348
Hpy188I TCNGA 2 cut(s) 193, 364
Hpy188III TCNNGA 3 cut(s) 687, 773, 785
Hpy99I CGWCG 5 cut(s) 26, 148, 242, 352, 364
HpyAV CCTTC 4 cut(s) 161, 238, 610, 619
HpyCH4III ACNGT 3 cut(s) 360, 464, 614
HpyCH4IV ACGT 2 cut(s) 240, 350
HpyCH4V TGCA 5 cut(s) 104, 185, 450, 555, 638
HpyF10VI GCNNNNNNNGC 3 cut(s) 110, 321, 552
HpySE526I ACGT 2 cut(s) 240, 350
Hsp92I GRCGYC 2 cut(s) 341, 350
Hsp92II CATG 5 cut(s) 43, 71, 410, 608, 818
HspAI GCGC 2 cut(s) 127, 198
KroI GCCGGC 1 cut(s) 148
KroNI GCCGGC 1 cut(s) 150
Ksp22I TGATCA 1 cut(s) 781
Kzo9I GATC 3 cut(s) 59, 188, 781
LguI GCTCTTC 2 cut(s) 21, 362
LmnI GCTCC 6 cut(s) 265, 287, 312, 491, 602, 649
Lsp1109I GCAGC 3 cut(s) 17, 280, 388
LweI GCATC 3 cut(s) 171, 533, 778
MaeII ACGT 2 cut(s) 240, 350
MaeIII GTNAC 3 cut(s) 81, 342, 677
MalI GATC 3 cut(s) 61, 190, 783
MbiI CCGCTC 1 cut(s) 401
MboI GATC 3 cut(s) 59, 188, 781
MboII GAAGA 8 cut(s) 38, 185, 294, 345, 379, 547, 727, 763
MflI RGATCY 1 cut(s) 188
MhlI GDGCHC 2 cut(s) 392, 488
MlsI TGGCCA 1 cut(s) 609
MluCI AATT 6 cut(s) 260, 302, 580, 660, 693, 745
MluNI TGGCCA 1 cut(s) 609
MmeI TCCRAC 2 cut(s) 342, 461
Mox20I TGGCCA 1 cut(s) 609
MreI CGCCGGCG 1 cut(s) 148
MroNI GCCGGC 1 cut(s) 148
MscI TGGCCA 1 cut(s) 609
Msp20I TGGCCA 1 cut(s) 609
MspA1I CMGCKG 3 cut(s) 8, 113, 379
MspI CCGG 2 cut(s) 32, 149
MvnI CGCG 1 cut(s) 127
MwoI GCNNNNNNNGC 3 cut(s) 110, 321, 552
NaeI GCCGGC 1 cut(s) 150
NcoI CCATGG 1 cut(s) 604
NdeII GATC 3 cut(s) 59, 188, 781
NgoMIV GCCGGC 1 cut(s) 148
NlaIII CATG 5 cut(s) 43, 71, 410, 608, 818
NlaIV GGNNCC 2 cut(s) 314, 645
NmuCI GTSAC 3 cut(s) 81, 342, 677
NspI RCATGY 2 cut(s) 71, 818
PciSI GCTCTTC 2 cut(s) 21, 362
PcsI WCGNNNNNNNCGW 4 cut(s) 86, 149, 344, 356
PdiI GCCGGC 1 cut(s) 150
PfeI GAWTC 1 cut(s) 219
PflMI CCANNNNNTGG 1 cut(s) 734
PkrI GCNGC 6 cut(s) 7, 270, 326, 378, 381, 403
Psp124BI GAGCTC 1 cut(s) 392
PspN4I GGNNCC 2 cut(s) 314, 645
PsuI RGATCY 1 cut(s) 188
RsaI GTAC 2 cut(s) 210, 616
RsaNI GTAC 2 cut(s) 209, 615
SacI GAGCTC 1 cut(s) 392
SapI GCTCTTC 2 cut(s) 21, 362
SatI GCNGC 6 cut(s) 6, 269, 325, 377, 380, 402
Sau3AI GATC 3 cut(s) 59, 188, 781
ScaI AGTACT 1 cut(s) 616
SduI GDGCHC 2 cut(s) 392, 488
SfaNI GCATC 3 cut(s) 171, 533, 778
SgrAI CRCCGGYG 1 cut(s) 148
SmlI CTYRAG 1 cut(s) 547
SmoI CTYRAG 1 cut(s) 547
Sse9I AATT 6 cut(s) 260, 302, 580, 660, 693, 745
SsiI CCGC 7 cut(s) 8, 113, 228, 248, 325, 379, 401
SspI AATATT 1 cut(s) 493
SstI GAGCTC 1 cut(s) 392
StyI CCWWGG 2 cut(s) 604, 655
TaaI ACNGT 3 cut(s) 360, 464, 614
TaiI ACGT 2 cut(s) 243, 353
TaqI TCGA 6 cut(s) 24, 62, 165, 258, 386, 397
TasI AATT 6 cut(s) 260, 302, 580, 660, 693, 745
TatI WGTACW 1 cut(s) 614
TauI GCSGC 3 cut(s) 327, 382, 404
TfiI GAWTC 1 cut(s) 219
TscAI CASTG 3 cut(s) 90, 595, 739
TseFI GTSAC 3 cut(s) 81, 342, 677
TseI GCWGC 3 cut(s) 5, 268, 376
Tsp45I GTSAC 3 cut(s) 81, 342, 677
TspRI CASTG 3 cut(s) 90, 595, 739
Van91I CCANNNNNTGG 1 cut(s) 734
XceI RCATGY 2 cut(s) 71, 818
XcmI CCANNNNNNNNNTGG 2 cut(s) 82, 662
ZraI GACGTC 1 cut(s) 351
ZrmI AGTACT 1 cut(s) 616
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.