Rorug01G0005700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0014784
Physical Location & Seq
Forward (+)
1151857 .. 1156219
4363 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0005700.1

Sequence Viewer

Length: 1536 bp
ATGGCATTTGGAGGTTCTGTGTTCTTGTCTATGCTCCTATCTTTGGCTGCAGCTGCTAGCTTCTCCGTTGGCACTTCCGATGCTTATTATATCCCTTTTAACCGAAGCAGTTTTCCCGCTGGATTCCTTTTTGGTGCTGGTTCAGCTGCTTATCAGTCAGAAGGAGCAGCATTTCTCGATGGAAGGGGACCTAGCATCTGGGATACTTTCGTTAGGAAACATCCAGAAAAAATATGGGATCACAGCACGGGAGACGTAGCTAATGACTTTTATCACCGTTATAAGGAGGATATAAAATTGATGAAGAAAATTGGGTTGGACTCTTTCAGATTCTCAATTTCATGGCCCAGAATACTTCCCAAGGGAAAACTTAGTGGAGGAGTGAACCCACTTGGTGTCAAATTCTACAATAATCTCATCGATGAGCTCGTATCCAATGGAATCAAGCCCTTAGTGACTTTGCTCCATTATGATCCTCCCCAAGCACTTGATGATCTGTATGGCGGGTTCTTAAGCCCTAACATAATAAATGATTATGGAGATTATGTGAATTTGTGCTTCAAGACATTTGGTGATCGAGTGAAGCACTGGGTCACAATGAACGAACCTAACGGATTTGCTATTAATGCCTACAACGGCGGTACCTTTGCACCAGGTCGGTGTTCTAACTATGAGGGAAATTGCACTTCTGGTAACTCTGCGACTGAACCCTACATTGTGGCACACCATTTGCTTCTTGCGCATTCAGCCGCTGTCAAGATATACAAGGACAAATATCAAGCTTCCCAAAAGGGACAGATCGGGATTACCATAGTCACTCACTGGTGGAAACCTAAATTCCCAGAACAGCTGGCTAGCCGGAAAGCCACCCTTAGATCACTTGACTTTATGTTTGGATGGTTTGCGGATCCTATATTTCATGGTGATTATCCGAAGGTCATGCGATCCTTGGTCGGGAATCGATTGCCGAAATTTACAGAAGCTGAATCGAAGCAGATAAAAGGGTCCCTCGATTTTCTTGGGTTAAATTATTACACAACATATTATACAGTAGATGAACCAGCTTCATCCAACTCTGTCAACCATAGTTGGAGTGCAGACAGACAAATCGCTGCTTCTACTACTGATAGAAATGGGGCTCTTATTGGTGCAGCGACTGATCTAGATTGGCTTTTCGTTTATCCAAAAGGGATTAGAGAGACTCTTCTATATATAAAGGAAAAGTACAAGAATCCTAACATTTACATAACTGAAAATGGATATGCATATGGATATAATGCCTCAACGCCAATCCAAGAAGCTCGTAAGGATAATTTGAGAATAAGATACCATCACGACCATCTGTGGTATCTTTTGAAAGCTATAAAGGATGGGGTTAAAGTGCAGGGATACTATGCGTGGTCATTTTGGGATGACTTCGAATGGGATGCTGGTTACACAGTTGGGTTTGGCCTTACATTAGTTGATGTCAAGGATAATCTGAGAAGATACCTCAAATATTCTGCCTATTGGTTCAAGATGTTCCTCCTGCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

511

Amino Acids

57.89

Weight (kDa)

8.67

Isoelectric Point (pI)

24.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_1 PF00232 36 - 507 1e-151 Glycosyl hydrolase family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014784)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g00910
malus_domestica MD02G1313500.v1.1
prunus_persica Prupe.2G012100_v2.0.a1 Prupe.2G012100_v2.0.a1
pyrus_communis pycom02g26300
rosa_chinensis RchiOBHm_Chr1g0315801
rosa_laevigata RLG00000030731
rosa_multiflora Rmu_co8267121.1_g000001 Rmu_sc0009816.1_g000004
rosa_roxburghii Rroxscaffold_4G00331430
rosa_rugosa Rorug01G0005600 Rorug01G0005700
rosa_samantha Rh1AG016600 Rh1BG009000 Rh1CG013900 Rh1DG009700
rosa_wichuraiana Rw1G000980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 282
Acc16I TGCGCA 1 cut(s) 741
Acc65I GGTACC 1 cut(s) 641
AccB1I GGYRCC 1 cut(s) 641
AciI CCGC 5 cut(s) 117, 504, 639, 750, 905
AclWI GGATC 5 cut(s) 246, 467, 902, 915, 939
AcsI RAATTY 4 cut(s) 401, 550, 836, 971
AdeI CACNNNGTG 1 cut(s) 395
AfaI GTAC 2 cut(s) 643, 1226
AfiI CCNNNNNNNGG 3 cut(s) 43, 283, 954
AflII CTTAAG 1 cut(s) 511
AgsI TTSAA 3 cut(s) 562, 1357, 1516
AjnI CCWGG 1 cut(s) 652
AjuI GAANNNNNNNTTGG 2 cut(s) 299, 331
Alw21I GWGCWC 1 cut(s) 429
Alw26I GTCTC 2 cut(s) 246, 1193
AlwI GGATC 5 cut(s) 246, 467, 902, 915, 939
AlwNI CAGNNNCTG 3 cut(s) 752, 983, 1157
AoxI GGCC 2 cut(s) 344, 1450
ApeKI GCWGC 7 cut(s) 47, 50, 53, 146, 167, 1112, 1151
ApoI RAATTY 4 cut(s) 401, 550, 836, 971
ArsI GACNNNNNNTTYG 2 cut(s) 875, 907
AseI ATTAAT 1 cut(s) 624
Asp718I GGTACC 1 cut(s) 641
AspLEI GCGC 1 cut(s) 742
AspS9I GGNCC 3 cut(s) 188, 345, 1005
AsuHPI GGTGA 3 cut(s) 266, 584, 935
AsuII TTCGAA 1 cut(s) 1419
AsuNHI GCTAGC 2 cut(s) 56, 854
AvaII GGWCC 2 cut(s) 188, 1005
BaeI ACNNNNGTAYC 4 cut(s) 195, 228, 625, 658
BamHI GGATCC 1 cut(s) 907
BanI GGYRCC 1 cut(s) 641
BanII GRGCYC 2 cut(s) 429, 1141
Bbv12I GWGCWC 1 cut(s) 429
BbvI GCAGC 7 cut(s) 34, 40, 62, 133, 179, 1099, 1163
BccI CCATC 5 cut(s) 173, 891, 1338, 1347, 1364
BceAI ACGGC 1 cut(s) 652
BcgI CGANNNNNNTGC 4 cut(s) 922, 956, 1409, 1443
BciT130I CCWGG 1 cut(s) 654
BciVI GTATCC 3 cut(s) 196, 442, 1382
BcoDI GTCTC 2 cut(s) 246, 1193
BfaI CTAG 4 cut(s) 57, 192, 855, 1163
BfmI CTRYAG 1 cut(s) 48
BfrI CTTAAG 1 cut(s) 511
BfuI GTATCC 3 cut(s) 196, 442, 1382
BisI GCNGC 8 cut(s) 48, 51, 54, 147, 168, 750, 1113, 1152
BlsI GCNGC 8 cut(s) 49, 52, 55, 148, 169, 751, 1114, 1153
Bme1390I CCNGG 1 cut(s) 654
Bme18I GGWCC 2 cut(s) 188, 1005
BmgT120I GGNCC 3 cut(s) 188, 345, 1005
BmiI GGNNCC 5 cut(s) 189, 643, 909, 1006, 1007
BmrFI CCNGG 1 cut(s) 654
BmrI ACTGGG 1 cut(s) 598
BmsI GCATC 3 cut(s) 70, 204, 1417
BmtI GCTAGC 2 cut(s) 60, 858
BmuI ACTGGG 1 cut(s) 598
Bpu14I TTCGAA 1 cut(s) 1419
Bsa29I ATCGAT 2 cut(s) 420, 961
BsaJI CCNNGG 2 cut(s) 360, 948
BsaXI ACNNNNNCTCC 3 cut(s) 33, 531, 561
Bsc4I CCNNNNNNNGG 3 cut(s) 43, 283, 954
Bse1I ACTGG 2 cut(s) 593, 827
BseBI CCWGG 1 cut(s) 654
BseCI ATCGAT 2 cut(s) 420, 961
BseDI CCNNGG 2 cut(s) 360, 948
BseGI GGATG 6 cut(s) 220, 902, 1067, 1375, 1417, 1432
BseLI CCNNNNNNNGG 3 cut(s) 43, 283, 954
BseMII CTCAG 1 cut(s) 1472
BseNI ACTGG 2 cut(s) 593, 827
BseRI GAGGAG 1 cut(s) 393
BseXI GCAGC 7 cut(s) 34, 40, 62, 133, 179, 1099, 1163
BsgI GTGCAG 4 cut(s) 1116, 1170, 1403, 1514
BshFI GGCC 2 cut(s) 346, 1452
BshNI GGYRCC 1 cut(s) 641
BshVI ATCGAT 2 cut(s) 420, 961
BsiHKAI GWGCWC 1 cut(s) 429
BsiSI CCGG 1 cut(s) 859
BslFI GGGAC 3 cut(s) 201, 807, 991
BslI CCNNNNNNNGG 3 cut(s) 43, 283, 954
BsmAI GTCTC 2 cut(s) 246, 1193
BsmBI CGTCTC 1 cut(s) 246
BsmFI GGGAC 3 cut(s) 201, 807, 991
BsmI GAATGC 1 cut(s) 742
BsnI GGCC 2 cut(s) 346, 1452
Bsp119I TTCGAA 1 cut(s) 1419
Bsp1286I GDGCHC 2 cut(s) 429, 1141
Bsp143I GATC 9 cut(s) 238, 472, 493, 574, 798, 875, 907, 944, 1159
BspACI CCGC 5 cut(s) 117, 504, 639, 750, 905
BspANI GGCC 2 cut(s) 346, 1452
BspCNI CTCAG 1 cut(s) 1473
BspDI ATCGAT 2 cut(s) 420, 961
BspLI GGNNCC 5 cut(s) 189, 643, 909, 1006, 1007
BspMAI CTGCAG 1 cut(s) 52
BspOI GCTAGC 2 cut(s) 60, 858
BspPI GGATC 5 cut(s) 246, 467, 902, 915, 939
BspT104I TTCGAA 1 cut(s) 1419
BspT107I GGYRCC 1 cut(s) 641
BspTI CTTAAG 1 cut(s) 511
BsrI ACTGG 2 cut(s) 593, 827
BssECI CCNNGG 2 cut(s) 360, 948
BssMI GATC 9 cut(s) 238, 472, 493, 574, 798, 875, 907, 944, 1159
BssT1I CCWWGG 2 cut(s) 360, 948
Bst2UI CCWGG 1 cut(s) 654
Bst4CI ACNGT 3 cut(s) 278, 1051, 1441
Bst6I CTCTTC 1 cut(s) 1209
BstAFI CTTAAG 1 cut(s) 511
BstBI TTCGAA 1 cut(s) 1419
BstC8I GCNNGC 3 cut(s) 58, 852, 856
BstDEI CTNAG 4 cut(s) 371, 451, 872, 1481
BstF5I GGATG 6 cut(s) 220, 902, 1067, 1375, 1417, 1432
BstHHI GCGC 1 cut(s) 742
BstKTI GATC 9 cut(s) 241, 475, 496, 577, 801, 878, 910, 947, 1162
BstMAI GTCTC 2 cut(s) 246, 1193
BstMBI GATC 9 cut(s) 238, 472, 493, 574, 798, 875, 907, 944, 1159
BstMWI GCNNNNNNNGC 5 cut(s) 53, 143, 626, 739, 746
BstNI CCWGG 1 cut(s) 654
BstSCI CCNGG 1 cut(s) 652
BstSFI CTRYAG 1 cut(s) 48
BstV1I GCAGC 7 cut(s) 34, 40, 62, 133, 179, 1099, 1163
BstX2I RGATCY 1 cut(s) 907
BstYI RGATCY 1 cut(s) 907
Bsu15I ATCGAT 2 cut(s) 420, 961
BsuI GTATCC 3 cut(s) 196, 442, 1382
BsuRI GGCC 2 cut(s) 346, 1452
BsuTUI ATCGAT 2 cut(s) 420, 961
BtsCI GGATG 6 cut(s) 220, 902, 1067, 1375, 1417, 1432
BtsIMutI CAGTG 3 cut(s) 586, 820, 1531
Cac8I GCNNGC 3 cut(s) 58, 852, 856
CaiI CAGNNNCTG 3 cut(s) 752, 983, 1157
CfoI GCGC 1 cut(s) 742
Cfr13I GGNCC 3 cut(s) 188, 345, 1005
ClaI ATCGAT 2 cut(s) 420, 961
CsiI ACCWGGT 1 cut(s) 652
Csp6I GTAC 2 cut(s) 642, 1225
CviAII CATG 3 cut(s) 342, 920, 940
CviQI GTAC 2 cut(s) 642, 1225
DdeI CTNAG 4 cut(s) 371, 451, 872, 1481
DpnI GATC 9 cut(s) 240, 474, 495, 576, 800, 877, 909, 946, 1161
DpnII GATC 9 cut(s) 238, 472, 493, 574, 798, 875, 907, 944, 1159
DraIII CACNNNGTG 1 cut(s) 395
Eam1104I CTCTTC 1 cut(s) 1209
EarI CTCTTC 1 cut(s) 1209
Ecl136II GAGCTC 1 cut(s) 427
Eco130I CCWWGG 2 cut(s) 360, 948
Eco24I GRGCYC 2 cut(s) 429, 1141
Eco47I GGWCC 2 cut(s) 188, 1005
Eco53kI GAGCTC 1 cut(s) 427
EcoICRI GAGCTC 1 cut(s) 427
EcoO109I RGGNCCY 2 cut(s) 188, 1005
EcoRII CCWGG 1 cut(s) 652
EcoT14I CCWWGG 2 cut(s) 360, 948
EcoT22I ATGCAT 1 cut(s) 1267
EcoT38I GRGCYC 2 cut(s) 429, 1141
ErhI CCWWGG 2 cut(s) 360, 948
Esp3I CGTCTC 1 cut(s) 246
FaeI CATG 3 cut(s) 345, 923, 943
FalI AAGNNNNNCTT 2 cut(s) 855, 887
FaqI GGGAC 3 cut(s) 201, 807, 991
FatI CATG 3 cut(s) 341, 919, 939
FauI CCCGC 2 cut(s) 124, 497
FauNDI CATATG 1 cut(s) 1267
Fnu4HI GCNGC 8 cut(s) 48, 51, 54, 147, 168, 750, 1113, 1152
FokI GGATG 6 cut(s) 207, 909, 1054, 1382, 1424, 1439
FriOI GRGCYC 2 cut(s) 429, 1141
Fsp4HI GCNGC 8 cut(s) 48, 51, 54, 147, 168, 750, 1113, 1152
FspBI CTAG 4 cut(s) 57, 192, 855, 1163
FspI TGCGCA 1 cut(s) 741
GlaI GCGC 1 cut(s) 741
GluI GCNGC 8 cut(s) 48, 51, 54, 147, 168, 750, 1113, 1152
HaeIII GGCC 2 cut(s) 346, 1452
HapII CCGG 1 cut(s) 859
HhaI GCGC 1 cut(s) 742
Hin1II CATG 3 cut(s) 345, 923, 943
Hin6I GCGC 1 cut(s) 740
HinP1I GCGC 1 cut(s) 740
HincII GTYRAC 1 cut(s) 1081
HindII GTYRAC 1 cut(s) 1081
HindIII AAGCTT 1 cut(s) 780
HinfI GANTC 8 cut(s) 123, 320, 330, 441, 958, 986, 1201, 1231
HpaII CCGG 1 cut(s) 859
HphI GGTGA 3 cut(s) 266, 584, 935
Hpy166II GTNNAC 2 cut(s) 385, 1081
Hpy188I TCNGA 5 cut(s) 79, 160, 329, 933, 1482
Hpy188III TCNNGA 9 cut(s) 176, 224, 562, 757, 802, 955, 1163, 1334, 1516
Hpy8I GTNNAC 2 cut(s) 385, 1081
HpyAV CCTTC 3 cut(s) 155, 177, 928
HpyCH4III ACNGT 3 cut(s) 278, 1051, 1441
HpyCH4IV ACGT 1 cut(s) 255
HpyCH4V TGCA 8 cut(s) 50, 650, 684, 1097, 1151, 1265, 1384, 1531
HpyF10VI GCNNNNNNNGC 5 cut(s) 53, 143, 626, 739, 746
HpyF3I CTNAG 4 cut(s) 371, 451, 872, 1481
HpySE526I ACGT 1 cut(s) 255
Hsp92II CATG 3 cut(s) 345, 923, 943
HspAI GCGC 1 cut(s) 740
KflI GGGWCCC 1 cut(s) 1005
KpnI GGTACC 1 cut(s) 645
Kzo9I GATC 9 cut(s) 238, 472, 493, 574, 798, 875, 907, 944, 1159
LmnI GCTCC 3 cut(s) 39, 164, 468
Lsp1109I GCAGC 7 cut(s) 34, 40, 62, 133, 179, 1099, 1163
LweI GCATC 3 cut(s) 70, 204, 1417
MabI ACCWGGT 1 cut(s) 652
MaeI CTAG 4 cut(s) 57, 192, 855, 1163
MaeII ACGT 1 cut(s) 255
MaeIII GTNAC 5 cut(s) 454, 592, 692, 814, 1433
MalI GATC 9 cut(s) 240, 474, 495, 576, 800, 877, 909, 946, 1161
MboI GATC 9 cut(s) 238, 472, 493, 574, 798, 875, 907, 944, 1159
MboII GAAGA 3 cut(s) 316, 1196, 1497
MflI RGATCY 1 cut(s) 907
MhlI GDGCHC 2 cut(s) 429, 1141
MlyI GAGTC 2 cut(s) 314, 1195
MmeI TCCRAC 3 cut(s) 297, 1070, 1095
MnlI CCTC 9 cut(s) 5, 280, 371, 486, 667, 1019, 1291, 1502, 1535
Mph1103I ATGCAT 1 cut(s) 1267
MseI TTAA 5 cut(s) 99, 512, 624, 1025, 1377
MspA1I CMGCKG 5 cut(s) 53, 119, 146, 752, 850
MspCI CTTAAG 1 cut(s) 511
MspI CCGG 1 cut(s) 859
MspR9I CCNGG 1 cut(s) 654
Mva1269I GAATGC 1 cut(s) 742
MvaI CCWGG 1 cut(s) 654
MwoI GCNNNNNNNGC 5 cut(s) 53, 143, 626, 739, 746
NdeI CATATG 1 cut(s) 1267
NdeII GATC 9 cut(s) 238, 472, 493, 574, 798, 875, 907, 944, 1159
NheI GCTAGC 2 cut(s) 56, 854
NlaIII CATG 3 cut(s) 345, 923, 943
NlaIV GGNNCC 5 cut(s) 189, 643, 909, 1006, 1007
NmuCI GTSAC 3 cut(s) 454, 592, 814
NsbI TGCGCA 1 cut(s) 741
NsiI ATGCAT 1 cut(s) 1267
NspV TTCGAA 1 cut(s) 1419
PcsI WCGNNNNNNNCGW 1 cut(s) 426
PctI GAATGC 1 cut(s) 742
PfeI GAWTC 6 cut(s) 123, 330, 441, 958, 986, 1231
PkrI GCNGC 8 cut(s) 49, 52, 55, 148, 169, 751, 1114, 1153
PleI GAGTC 2 cut(s) 314, 1195
PpsI GAGTC 2 cut(s) 314, 1195
PpuMI RGGWCCY 2 cut(s) 188, 1005
PshBI ATTAAT 1 cut(s) 624
PsiI TTATAA 1 cut(s) 282
Psp124BI GAGCTC 1 cut(s) 429
Psp5II RGGWCCY 2 cut(s) 188, 1005
Psp6I CCWGG 1 cut(s) 652
PspGI CCWGG 1 cut(s) 652
PspN4I GGNNCC 5 cut(s) 189, 643, 909, 1006, 1007
PspPI GGNCC 3 cut(s) 188, 345, 1005
PspPPI RGGWCCY 2 cut(s) 188, 1005
PsrI GAACNNNNNNTAC 2 cut(s) 491, 523
PstI CTGCAG 1 cut(s) 52
PstNI CAGNNNCTG 3 cut(s) 752, 983, 1157
PsuI RGATCY 1 cut(s) 907
PvuII CAGCTG 3 cut(s) 53, 146, 850
RsaI GTAC 2 cut(s) 643, 1226
RsaNI GTAC 2 cut(s) 642, 1225
SacI GAGCTC 1 cut(s) 429
SaqAI TTAA 5 cut(s) 99, 512, 624, 1025, 1377
SatI GCNGC 8 cut(s) 48, 51, 54, 147, 168, 750, 1113, 1152
Sau3AI GATC 9 cut(s) 238, 472, 493, 574, 798, 875, 907, 944, 1159
Sau96I GGNCC 3 cut(s) 188, 345, 1005
SchI GAGTC 2 cut(s) 314, 1195
ScrFI CCNGG 1 cut(s) 654
SduI GDGCHC 2 cut(s) 429, 1141
SexAI ACCWGGT 1 cut(s) 652
SfaNI GCATC 3 cut(s) 70, 204, 1417
SfcI CTRYAG 1 cut(s) 48
SfuI TTCGAA 1 cut(s) 1419
SinI GGWCC 2 cut(s) 188, 1005
SmlI CTYRAG 1 cut(s) 511
SmoI CTYRAG 1 cut(s) 511
SsiI CCGC 5 cut(s) 117, 504, 639, 750, 905
SspI AATATT 1 cut(s) 1499
SspMI CTAG 4 cut(s) 57, 192, 855, 1163
SstI GAGCTC 1 cut(s) 429
StyD4I CCNGG 1 cut(s) 652
StyI CCWWGG 2 cut(s) 360, 948
TaaI ACNGT 3 cut(s) 278, 1051, 1441
TaiI ACGT 1 cut(s) 258
TaqI TCGA 7 cut(s) 177, 420, 577, 961, 989, 1011, 1419
TatI WGTACW 1 cut(s) 1224
TauI GCSGC 1 cut(s) 752
TfiI GAWTC 6 cut(s) 123, 330, 441, 958, 986, 1231
Tru1I TTAA 5 cut(s) 99, 512, 624, 1025, 1377
Tru9I TTAA 5 cut(s) 99, 512, 624, 1025, 1377
TscAI CASTG 2 cut(s) 593, 827
TseFI GTSAC 3 cut(s) 454, 592, 814
TseI GCWGC 7 cut(s) 47, 50, 53, 146, 167, 1112, 1151
Tsp45I GTSAC 3 cut(s) 454, 592, 814
TspDTI ATGAA 6 cut(s) 317, 330, 614, 908, 1056, 1071
TspGWI ACGGA 2 cut(s) 55, 627
TspRI CASTG 2 cut(s) 593, 827
Vha464I CTTAAG 1 cut(s) 511
VpaK11BI GGWCC 2 cut(s) 188, 1005
VspI ATTAAT 1 cut(s) 624
XapI RAATTY 4 cut(s) 401, 550, 836, 971
XbaI TCTAGA 1 cut(s) 1162
XcmI CCANNNNNNNNNTGG 1 cut(s) 231
XspI CTAG 4 cut(s) 57, 192, 855, 1163
Zsp2I ATGCAT 1 cut(s) 1267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.