Rh1CG013900

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
Physical Location & Seq
Reverse (-)
2179441 .. 2180687
1247 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG013900.1

Sequence Viewer

Length: 393 bp
ATGGCTGTGGCTTTGGCTATTTCTCCAACCTTTTGTTGCAGGCCATCAAACGGTTCAAAGATCGTCAAATCGTGCTCCAATATTAGTAGTGATAGCAAAACTTACACATCCCAAATCGGAACGAAGAAGCAATGCTTGAGGTGCAACACCCTCTACACAGACGAGGATAATTCCCCTACTGCTTGCTTCTTCCATGGCCACAGTACTGGAGAGAAGGGATTATTTGCATTGGCTCCACCACACCAAGGAATTGATGGAGAGTGGAGTGAAAGGTCTGGAGTAATTGTGTATAGATGGAATGAGAAGAACAAGAGACCAAACACTGGAAGTGGGAATTGGAAGAAAAGATGGAGCTGTTGTCAAGAGTATGATCAAGATGCCACACCCTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

130

Amino Acids

14.42

Weight (kDa)

8.59

Isoelectric Point (pI)

57.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014784)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 323
AcoI YGGCCR 1 cut(s) 196
AfaI GTAC 1 cut(s) 205
AfiI CCNNNNNNNGG 3 cut(s) 50, 245, 323
AgsI TTSAA 1 cut(s) 57
AjuI GAANNNNNNNTTGG 2 cut(s) 319, 351
AluBI AGCT 1 cut(s) 354
AluI AGCT 1 cut(s) 354
Alw21I GWGCWC 1 cut(s) 77
Alw26I GTCTC 1 cut(s) 307
AoxI GGCC 2 cut(s) 41, 196
BalI TGGCCA 1 cut(s) 198
Bbv12I GWGCWC 1 cut(s) 77
BccI CCATC 4 cut(s) 52, 248, 288, 342
BclI TGATCA 1 cut(s) 370
BcoDI GTCTC 1 cut(s) 307
BmcAI AGTACT 1 cut(s) 205
BmiI GGNNCC 1 cut(s) 234
BmsI GCATC 1 cut(s) 367
BpmI CTGGAG 2 cut(s) 228, 297
BpuEI CTTGAG 1 cut(s) 157
BsaI GGTCTC 1 cut(s) 307
BsaJI CCNNGG 2 cut(s) 193, 244
BsaXI ACNNNNNCTCC 4 cut(s) 270, 300, 343, 373
Bsc4I CCNNNNNNNGG 3 cut(s) 50, 245, 323
Bse1I ACTGG 2 cut(s) 211, 328
Bse3DI GCAATG 1 cut(s) 137
BseDI CCNNGG 2 cut(s) 193, 244
BseGI GGATG 1 cut(s) 107
BseLI CCNNNNNNNGG 3 cut(s) 50, 245, 323
BseMI GCAATG 1 cut(s) 137
BseNI ACTGG 2 cut(s) 211, 328
BshFI GGCC 2 cut(s) 43, 198
BsiHKAI GWGCWC 1 cut(s) 77
BslI CCNNNNNNNGG 3 cut(s) 50, 245, 323
BsmAI GTCTC 1 cut(s) 307
BsnI GGCC 2 cut(s) 43, 198
Bso31I GGTCTC 1 cut(s) 307
Bsp1286I GDGCHC 1 cut(s) 77
Bsp143I GATC 2 cut(s) 60, 370
Bsp19I CCATGG 1 cut(s) 193
BspANI GGCC 2 cut(s) 43, 198
BspLI GGNNCC 1 cut(s) 234
BspTNI GGTCTC 1 cut(s) 307
BsrDI GCAATG 1 cut(s) 137
BsrI ACTGG 2 cut(s) 211, 328
BssECI CCNNGG 2 cut(s) 193, 244
BssMI GATC 2 cut(s) 60, 370
BssT1I CCWWGG 2 cut(s) 193, 244
Bst4CI ACNGT 2 cut(s) 53, 203
BstC8I GCNNGC 2 cut(s) 41, 184
BstDSI CCRYGG 1 cut(s) 193
BstF5I GGATG 1 cut(s) 107
BstKTI GATC 2 cut(s) 63, 373
BstMAI GTCTC 1 cut(s) 307
BstMBI GATC 2 cut(s) 60, 370
BstMWI GCNNNNNNNGC 1 cut(s) 141
BstXI CCANNNNNNTGG 1 cut(s) 206
BsuRI GGCC 2 cut(s) 43, 198
BtgI CCRYGG 1 cut(s) 193
BtsCI GGATG 1 cut(s) 107
BtsIMutI CAGTG 1 cut(s) 321
Cac8I GCNNGC 2 cut(s) 41, 184
Csp6I GTAC 1 cut(s) 204
CviAII CATG 1 cut(s) 194
CviJI RGCY 7 cut(s) 5, 11, 17, 43, 198, 233, 354
CviKI_1 RGCY 7 cut(s) 5, 11, 17, 43, 198, 233, 354
CviQI GTAC 1 cut(s) 204
DpnI GATC 2 cut(s) 62, 372
DpnII GATC 2 cut(s) 60, 370
EaeI YGGCCR 1 cut(s) 196
Eco130I CCWWGG 2 cut(s) 193, 244
Eco31I GGTCTC 1 cut(s) 307
EcoT14I CCWWGG 2 cut(s) 193, 244
ErhI CCWWGG 2 cut(s) 193, 244
FaeI CATG 1 cut(s) 197
FaiI YATR 3 cut(s) 195, 291, 369
FalI AAGNNNNNCTT 2 cut(s) 119, 151
FatI CATG 1 cut(s) 193
FbaI TGATCA 1 cut(s) 370
FokI GGATG 1 cut(s) 94
GsuI CTGGAG 2 cut(s) 228, 297
HaeIII GGCC 2 cut(s) 43, 198
Hin1II CATG 1 cut(s) 197
Hpy188I TCNGA 1 cut(s) 119
Hpy188III TCNNGA 3 cut(s) 276, 362, 374
HpyAV CCTTC 1 cut(s) 208
HpyCH4III ACNGT 2 cut(s) 53, 203
HpyCH4V TGCA 3 cut(s) 39, 144, 227
HpyF10VI GCNNNNNNNGC 1 cut(s) 141
Hsp92II CATG 1 cut(s) 197
Ksp22I TGATCA 1 cut(s) 370
Kzo9I GATC 2 cut(s) 60, 370
LmnI GCTCC 3 cut(s) 80, 238, 351
LpnPI CCDG 4 cut(s) 25, 192, 261, 309
LweI GCATC 1 cut(s) 367
MalI GATC 2 cut(s) 62, 372
MboI GATC 2 cut(s) 60, 370
MboII GAAGA 4 cut(s) 136, 181, 316, 352
MhlI GDGCHC 1 cut(s) 77
MlsI TGGCCA 1 cut(s) 198
MluCI AATT 4 cut(s) 169, 249, 282, 334
MluNI TGGCCA 1 cut(s) 198
MmeI TCCRAC 1 cut(s) 50
MnlI CCTC 3 cut(s) 132, 157, 161
Mox20I TGGCCA 1 cut(s) 198
MscI TGGCCA 1 cut(s) 198
MseI TTAA 1 cut(s) 391
Msp20I TGGCCA 1 cut(s) 198
MwoI GCNNNNNNNGC 1 cut(s) 141
NcoI CCATGG 1 cut(s) 193
NdeII GATC 2 cut(s) 60, 370
NlaIII CATG 1 cut(s) 197
NlaIV GGNNCC 1 cut(s) 234
PflMI CCANNNNNTGG 1 cut(s) 323
PspN4I GGNNCC 1 cut(s) 234
RsaI GTAC 1 cut(s) 205
RsaNI GTAC 1 cut(s) 204
SaqAI TTAA 1 cut(s) 391
Sau3AI GATC 2 cut(s) 60, 370
ScaI AGTACT 1 cut(s) 205
SduI GDGCHC 1 cut(s) 77
SetI ASST 4 cut(s) 32, 143, 275, 356
SfaNI GCATC 1 cut(s) 367
SmlI CTYRAG 1 cut(s) 136
SmoI CTYRAG 1 cut(s) 136
Sse9I AATT 4 cut(s) 169, 249, 282, 334
SspI AATATT 1 cut(s) 82
StyI CCWWGG 2 cut(s) 193, 244
TaaI ACNGT 2 cut(s) 53, 203
TasI AATT 4 cut(s) 169, 249, 282, 334
TatI WGTACW 1 cut(s) 203
Tru1I TTAA 1 cut(s) 391
Tru9I TTAA 1 cut(s) 391
TscAI CASTG 1 cut(s) 328
TspRI CASTG 1 cut(s) 328
Van91I CCANNNNNTGG 1 cut(s) 323
XcmI CCANNNNNNNNNTGG 1 cut(s) 251
ZrmI AGTACT 1 cut(s) 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.