Rorug01G0005600

Thylakoid lumenal 19 kDa protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0005710
Physical Location & Seq
Forward (+)
1085798 .. 1091363
5566 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0005600.1

Sequence Viewer

Length: 1560 bp
ATGGGTGGTCGTCCTCTGCTCTTCTTCATCTTGATCTTGATCTGCCTCATACTCACTGCTCTTGTTGGCTCATCAGCAAGCAATGAGGCGGCTGCTGCTGCTGCTCCTCGTCATTATTCGATTCCATTCAATAGAAGTAGCTTCCCAGTTAGTTTCATCTTTGGAGCTGGTTCTGCTGCTTATCAGACTGAAGGAGCAGCACATATCCATGGAAAGGGACCAAGCATATGGGACACTTTCACTACAAAACATCAAGAAAAAATAACTGATGGTAGCAACGGGGATGTAGCAGATGACTTTTACCATCGTTATGAGGAAGATGTGAAATTGATGAAAAAAGTCGGTTTAGACTCCTTCAGATTTTCAATCTCATGGTCAAGATTACTACCTAAGGGAAAAGTCAAAGGTGGAGTGAACCAAGAAGGCGTAAAATTCTACAACAATCTGATAAATGAGCTCTTGTCGAATGGAATAATACCTTTTGTGACGCTTTTCCACTGGGATCTACCACAGGCTCTTGAAGATGAGTATGGTGGATTTTTAAATCATAAGATTGTTGGTGATTTTCAAGATTATGCGGATTTTTGTTTCAAAACATTTGGTGACCGAGTTAAGCATTGGATCACTCTGAACGAGCCAGTTACATTCTGTGTCAACGGGTACAATGGTGGAACCAATGCACCTGGTCGATGCTCTAACTATGTCGGAAATTGCACCGCCGGTAACTCTGCCACAGAGCCTTACATTGTAGGCCATCATCTGCTGCTTGCTCACGCGCACTCTGCAAATTTATACAAGAAGAAGTATCAGGCTTCTCAAAAAGGGCAAATCGGGATTTCGGTTGTGACATACTGGTATTTAGCAAAATCGGAAACTGCTGCAAGCAAGAGGGCAGCTTCTAGGTCTCTTGATTTTGTTTTTGGATGGTTTGCTCATCCCGTTACATTCGGTGACTATCCTCAAACCATGAGAGCTTCTGTGGGTGATCGGTTGCCTAAATTCAGTAAAGAAGAAACTAAGCTCCTAAAAGGGTCTCTAGATTTCCTTGGTGTCAATTACTACACAAGTAGTTATGCAGATGTTTCCTCACTCTCCACTAGTAATGTCAACCAAAGTTTCTTCGGAGACATGCATACTTCTCTCTCTACTGAGAAAAATGGGGTTCCTTTGGGTTCAGCGACTGCTTTGAGCTGGCTTTACATCTATCCAAAGGGAATTCGAGAGCTTATGCTATACATAAAAGAAAAGTACAATGATCCCGAGATTTACATTACTGAAAATGGTGTTGGCGAGGCAAATAATAGCTCCCAGCCCCTCAACGATGCCCTCAAGGATAGTACAAGGATAAGATACCATTCTCTCCATCTTTCATATCTTTTGAAGTCCATCAAGGAGGGGGTGAAGGTGAGGGGATACTTCGCATGGTCATTTCTTGATGTTTATGAATGGGATTCAGGCTACACAGTTCGATTTGGACTCACCTACGTCGATTACAAGAATAACTTGAAGAGGTATCTCAAGTACTCTGCATACTGGTTCAAGATGTTCCTCCTCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PsbP

Protein Analysis

519

Amino Acids

58.28

Weight (kDa)

8.8

Isoelectric Point (pI)

26.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_1 PF00232 46 - 516 5.7e-156 Glycosyl hydrolase family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 776
AciI CCGC 3 cut(s) 89, 578, 717
AclWI GGATC 3 cut(s) 510, 629, 1250
AcsI RAATTY 4 cut(s) 431, 787, 998, 1215
AcuI CTGAAG 2 cut(s) 210, 340
AfaI GTAC 4 cut(s) 662, 1250, 1339, 1523
AfiI CCNNNNNNNGG 1 cut(s) 214
AgsI TTSAA 8 cut(s) 130, 366, 521, 569, 592, 1381, 1507, 1540
AhlI ACTAGT 1 cut(s) 1097
AjnI CCWGG 1 cut(s) 682
AjuI GAANNNNNNNTTGG 2 cut(s) 1269, 1301
AluBI AGCT 9 cut(s) 141, 167, 457, 896, 974, 1021, 1191, 1225, 1305
AluI AGCT 9 cut(s) 141, 167, 457, 896, 974, 1021, 1191, 1225, 1305
Alw21I GWGCWC 1 cut(s) 459
Alw26I GTCTC 3 cut(s) 909, 1038, 1119
AlwI GGATC 3 cut(s) 510, 629, 1250
AlwNI CAGNNNCTG 1 cut(s) 1181
Ama87I CYCGRG 1 cut(s) 1259
AoxI GGCC 1 cut(s) 751
ApeKI GCWGC 9 cut(s) 92, 95, 98, 101, 176, 197, 763, 878, 893
ApoI RAATTY 4 cut(s) 431, 787, 998, 1215
AspLEI GCGC 1 cut(s) 778
AspS9I GGNCC 1 cut(s) 218
AsuHPI GGTGA 7 cut(s) 572, 614, 962, 995, 1411, 1417, 1471
AvaI CYCGRG 1 cut(s) 1259
AvaII GGWCC 1 cut(s) 218
AxyI CCTNAGG 1 cut(s) 390
BaeI ACNNNNGTAYC 2 cut(s) 652, 685
BanII GRGCYC 1 cut(s) 459
Bbv12I GWGCWC 1 cut(s) 459
BbvI GCAGC 9 cut(s) 79, 82, 85, 88, 163, 209, 750, 865, 905
BccI CCATC 6 cut(s) 263, 312, 762, 918, 1371, 1394
BciT130I CCWGG 1 cut(s) 684
BciVI GTATCC 1 cut(s) 1406
BcoDI GTCTC 3 cut(s) 909, 1038, 1119
BcuI ACTAGT 1 cut(s) 1097
BfaI CTAG 3 cut(s) 900, 1037, 1098
BfuI GTATCC 1 cut(s) 1406
BmcAI AGTACT 1 cut(s) 1523
Bme1390I CCNGG 1 cut(s) 684
Bme18I GGWCC 1 cut(s) 218
BmeT110I CYCGRG 1 cut(s) 1259
BmgT120I GGNCC 1 cut(s) 218
BmiI GGNNCC 3 cut(s) 219, 673, 1164
BmrFI CCNGG 1 cut(s) 684
BmrI ACTGGG 2 cut(s) 140, 508
BmsI GCATC 2 cut(s) 680, 1312
BmuI ACTGGG 2 cut(s) 140, 508
BpuEI CTTGAG 2 cut(s) 1313, 1502
BsaBI GATNNNNATC 1 cut(s) 38
BsaI GGTCTC 2 cut(s) 909, 1038
BsaJI CCNNGG 2 cut(s) 208, 1045
Bsc4I CCNNNNNNNGG 1 cut(s) 214
Bse118I RCCGGY 1 cut(s) 719
Bse1I ACTGG 5 cut(s) 146, 503, 638, 857, 1538
Bse21I CCTNAGG 1 cut(s) 390
Bse3DI GCAATG 1 cut(s) 88
Bse8I GATNNNNATC 1 cut(s) 38
BseBI CCWGG 1 cut(s) 684
BseDI CCNNGG 2 cut(s) 208, 1045
BseGI GGATG 3 cut(s) 289, 929, 934
BseJI GATNNNNATC 1 cut(s) 38
BseLI CCNNNNNNNGG 1 cut(s) 214
BseMI GCAATG 1 cut(s) 88
BseMII CTCAG 1 cut(s) 1140
BseNI ACTGG 5 cut(s) 146, 503, 638, 857, 1538
BseRI GAGGAG 2 cut(s) 96, 1541
BseXI GCAGC 9 cut(s) 79, 82, 85, 88, 163, 209, 750, 865, 905
BseYI CCCAGC 1 cut(s) 1308
Bsh1236I CGCG 1 cut(s) 776
BshFI GGCC 1 cut(s) 753
BsiHKAI GWGCWC 1 cut(s) 459
BsiHKCI CYCGRG 1 cut(s) 1259
BsiSI CCGG 1 cut(s) 720
BslFI GGGAC 2 cut(s) 231, 245
BslI CCNNNNNNNGG 1 cut(s) 214
BsmAI GTCTC 3 cut(s) 909, 1038, 1119
BsmFI GGGAC 2 cut(s) 231, 245
BsnI GGCC 1 cut(s) 753
Bso31I GGTCTC 2 cut(s) 909, 1038
BsoBI CYCGRG 1 cut(s) 1259
Bsp1286I GDGCHC 1 cut(s) 459
Bsp143I GATC 6 cut(s) 33, 39, 502, 621, 985, 1255
Bsp19I CCATGG 1 cut(s) 208
BspACI CCGC 3 cut(s) 89, 578, 717
BspANI GGCC 1 cut(s) 753
BspCNI CTCAG 1 cut(s) 1141
BspFNI CGCG 1 cut(s) 776
BspLI GGNNCC 3 cut(s) 219, 673, 1164
BspPI GGATC 3 cut(s) 510, 629, 1250
BspQI GCTCTTC 1 cut(s) 26
BspTNI GGTCTC 2 cut(s) 909, 1038
BsrDI GCAATG 1 cut(s) 88
BsrFI RCCGGY 1 cut(s) 719
BsrI ACTGG 5 cut(s) 146, 503, 638, 857, 1538
BssAI RCCGGY 1 cut(s) 719
BssECI CCNNGG 2 cut(s) 208, 1045
BssMI GATC 6 cut(s) 33, 39, 502, 621, 985, 1255
BssT1I CCWWGG 2 cut(s) 208, 1045
Bst2UI CCWGG 1 cut(s) 684
Bst4CI ACNGT 1 cut(s) 1465
Bst6I CTCTTC 2 cut(s) 26, 1502
BstC8I GCNNGC 4 cut(s) 79, 768, 883, 1193
BstDEI CTNAG 3 cut(s) 390, 1017, 1149
BstDSI CCRYGG 1 cut(s) 208
BstEII GGTNACC 1 cut(s) 602
BstF5I GGATG 3 cut(s) 289, 929, 934
BstFNI CGCG 1 cut(s) 776
BstHHI GCGC 1 cut(s) 778
BstKTI GATC 6 cut(s) 36, 42, 505, 624, 988, 1258
BstMAI GTCTC 3 cut(s) 909, 1038, 1119
BstMBI GATC 6 cut(s) 33, 39, 502, 621, 985, 1255
BstMWI GCNNNNNNNGC 5 cut(s) 95, 98, 101, 173, 782
BstNI CCWGG 1 cut(s) 684
BstNSI RCATGY 1 cut(s) 1132
BstPI GGTNACC 1 cut(s) 602
BstSCI CCNGG 1 cut(s) 682
BstUI CGCG 1 cut(s) 776
BstV1I GCAGC 9 cut(s) 79, 82, 85, 88, 163, 209, 750, 865, 905
BstX2I RGATCY 1 cut(s) 502
BstXI CCANNNNNNTGG 1 cut(s) 228
BstYI RGATCY 1 cut(s) 502
Bsu36I CCTNAGG 1 cut(s) 390
BsuI GTATCC 1 cut(s) 1406
BsuRI GGCC 1 cut(s) 753
BtgI CCRYGG 1 cut(s) 208
BtsCI GGATG 3 cut(s) 289, 929, 934
BtsI GCAGTG 1 cut(s) 54
BtsIMutI CAGTG 2 cut(s) 54, 496
Cac8I GCNNGC 4 cut(s) 79, 768, 883, 1193
CaiI CAGNNNCTG 1 cut(s) 1181
CfoI GCGC 1 cut(s) 778
Cfr10I RCCGGY 1 cut(s) 719
Cfr13I GGNCC 1 cut(s) 218
CseI GACGC 1 cut(s) 496
CsiI ACCWGGT 1 cut(s) 682
Csp6I GTAC 4 cut(s) 661, 1249, 1338, 1522
CviAII CATG 5 cut(s) 209, 372, 967, 1129, 1422
CviQI GTAC 4 cut(s) 661, 1249, 1338, 1522
DdeI CTNAG 3 cut(s) 390, 1017, 1149
DpnI GATC 6 cut(s) 35, 41, 504, 623, 987, 1257
DpnII GATC 6 cut(s) 33, 39, 502, 621, 985, 1255
DraI TTTAAA 1 cut(s) 543
Eam1104I CTCTTC 2 cut(s) 26, 1502
EarI CTCTTC 2 cut(s) 26, 1502
Ecl136II GAGCTC 1 cut(s) 457
Eco130I CCWWGG 2 cut(s) 208, 1045
Eco24I GRGCYC 1 cut(s) 459
Eco31I GGTCTC 2 cut(s) 909, 1038
Eco47I GGWCC 1 cut(s) 218
Eco53kI GAGCTC 1 cut(s) 457
Eco57I CTGAAG 2 cut(s) 210, 340
Eco81I CCTNAGG 1 cut(s) 390
Eco88I CYCGRG 1 cut(s) 1259
Eco91I GGTNACC 1 cut(s) 602
EcoICRI GAGCTC 1 cut(s) 457
EcoO65I GGTNACC 1 cut(s) 602
EcoRI GAATTC 1 cut(s) 1215
EcoRII CCWGG 1 cut(s) 682
EcoT14I CCWWGG 2 cut(s) 208, 1045
EcoT22I ATGCAT 1 cut(s) 1134
EcoT38I GRGCYC 1 cut(s) 459
ErhI CCWWGG 2 cut(s) 208, 1045
FaeI CATG 5 cut(s) 212, 375, 970, 1132, 1425
FalI AAGNNNNNCTT 2 cut(s) 1487, 1519
FaqI GGGAC 2 cut(s) 231, 245
FatI CATG 5 cut(s) 208, 371, 966, 1128, 1421
FauNDI CATATG 1 cut(s) 227
FokI GGATG 3 cut(s) 296, 921, 936
FriOI GRGCYC 1 cut(s) 459
FspBI CTAG 3 cut(s) 900, 1037, 1098
GlaI GCGC 1 cut(s) 777
GsaI CCCAGC 1 cut(s) 1312
HaeIII GGCC 1 cut(s) 753
HapII CCGG 1 cut(s) 720
HgaI GACGC 1 cut(s) 496
HhaI GCGC 1 cut(s) 778
Hin1II CATG 5 cut(s) 212, 375, 970, 1132, 1425
Hin6I GCGC 1 cut(s) 776
HinP1I GCGC 1 cut(s) 776
HincII GTYRAC 2 cut(s) 655, 1108
HindII GTYRAC 2 cut(s) 655, 1108
HinfI GANTC 4 cut(s) 121, 350, 1451, 1476
HpaII CCGG 1 cut(s) 720
HphI GGTGA 7 cut(s) 572, 614, 962, 995, 1411, 1417, 1471
Hpy166II GTNNAC 3 cut(s) 415, 655, 1108
Hpy188I TCNGA 7 cut(s) 186, 359, 447, 630, 707, 871, 1124
Hpy8I GTNNAC 3 cut(s) 415, 655, 1108
Hpy99I CGWCG 1 cut(s) 1490
HpyAV CCTTC 4 cut(s) 185, 364, 416, 1396
HpyCH4III ACNGT 1 cut(s) 1465
HpyCH4IV ACGT 1 cut(s) 1485
HpyCH4V TGCA 7 cut(s) 680, 714, 785, 881, 1076, 1132, 1529
HpyF10VI GCNNNNNNNGC 5 cut(s) 95, 98, 101, 173, 782
HpyF3I CTNAG 3 cut(s) 390, 1017, 1149
HpySE526I ACGT 1 cut(s) 1485
Hsp92II CATG 5 cut(s) 212, 375, 970, 1132, 1425
HspAI GCGC 1 cut(s) 776
Kzo9I GATC 6 cut(s) 33, 39, 502, 621, 985, 1255
LguI GCTCTTC 1 cut(s) 26
LmnI GCTCC 5 cut(s) 109, 164, 194, 1026, 1310
Lsp1109I GCAGC 9 cut(s) 79, 82, 85, 88, 163, 209, 750, 865, 905
LweI GCATC 2 cut(s) 680, 1312
MabI ACCWGGT 1 cut(s) 682
MaeI CTAG 3 cut(s) 900, 1037, 1098
MaeII ACGT 1 cut(s) 1485
MaeIII GTNAC 7 cut(s) 484, 602, 640, 722, 844, 940, 950
MalI GATC 6 cut(s) 35, 41, 504, 623, 987, 1257
MboI GATC 6 cut(s) 33, 39, 502, 621, 985, 1255
MboII GAAGA 8 cut(s) 13, 16, 329, 533, 811, 1022, 1111, 1519
MflI RGATCY 1 cut(s) 502
MhlI GDGCHC 1 cut(s) 459
MluCI AATT 7 cut(s) 326, 431, 709, 787, 998, 1054, 1215
MlyI GAGTC 2 cut(s) 344, 1470
MmeI TCCRAC 1 cut(s) 685
Mph1103I ATGCAT 1 cut(s) 1134
MseI TTAA 2 cut(s) 542, 612
MslI CAYNNNNRTG 2 cut(s) 207, 309
MspI CCGG 1 cut(s) 720
MspR9I CCNGG 1 cut(s) 684
MvaI CCWGG 1 cut(s) 684
MvnI CGCG 1 cut(s) 776
MwoI GCNNNNNNNGC 5 cut(s) 95, 98, 101, 173, 782
NcoI CCATGG 1 cut(s) 208
NdeI CATATG 1 cut(s) 227
NdeII GATC 6 cut(s) 33, 39, 502, 621, 985, 1255
NlaIII CATG 5 cut(s) 212, 375, 970, 1132, 1425
NlaIV GGNNCC 3 cut(s) 219, 673, 1164
NmuCI GTSAC 4 cut(s) 484, 602, 844, 950
NsiI ATGCAT 1 cut(s) 1134
NspI RCATGY 1 cut(s) 1132
PciSI GCTCTTC 1 cut(s) 26
PfeI GAWTC 2 cut(s) 121, 1451
PleI GAGTC 2 cut(s) 344, 1470
PpsI GAGTC 2 cut(s) 344, 1470
Psp124BI GAGCTC 1 cut(s) 459
Psp6I CCWGG 1 cut(s) 682
PspEI GGTNACC 1 cut(s) 602
PspFI CCCAGC 1 cut(s) 1308
PspGI CCWGG 1 cut(s) 682
PspN4I GGNNCC 3 cut(s) 219, 673, 1164
PspPI GGNCC 1 cut(s) 218
PstNI CAGNNNCTG 1 cut(s) 1181
PsuI RGATCY 1 cut(s) 502
RsaI GTAC 4 cut(s) 662, 1250, 1339, 1523
RsaNI GTAC 4 cut(s) 661, 1249, 1338, 1522
RseI CAYNNNNRTG 2 cut(s) 207, 309
SacI GAGCTC 1 cut(s) 459
SapI GCTCTTC 1 cut(s) 26
SaqAI TTAA 2 cut(s) 542, 612
Sau3AI GATC 6 cut(s) 33, 39, 502, 621, 985, 1255
Sau96I GGNCC 1 cut(s) 218
ScaI AGTACT 1 cut(s) 1523
SchI GAGTC 2 cut(s) 344, 1470
ScrFI CCNGG 1 cut(s) 684
SduI GDGCHC 1 cut(s) 459
SexAI ACCWGGT 1 cut(s) 682
SfaNI GCATC 2 cut(s) 680, 1312
SinI GGWCC 1 cut(s) 218
SmiMI CAYNNNNRTG 2 cut(s) 207, 309
SmlI CTYRAG 2 cut(s) 1328, 1517
SmoI CTYRAG 2 cut(s) 1328, 1517
SpeI ACTAGT 1 cut(s) 1097
Sse9I AATT 7 cut(s) 326, 431, 709, 787, 998, 1054, 1215
SsiI CCGC 3 cut(s) 89, 578, 717
SspMI CTAG 3 cut(s) 900, 1037, 1098
SstI GAGCTC 1 cut(s) 459
StyD4I CCNGG 1 cut(s) 682
StyI CCWWGG 2 cut(s) 208, 1045
TaaI ACNGT 1 cut(s) 1465
TaiI ACGT 1 cut(s) 1488
TaqI TCGA 6 cut(s) 119, 464, 688, 1219, 1468, 1488
TaqII GACCGA 1 cut(s) 621
TasI AATT 7 cut(s) 326, 431, 709, 787, 998, 1054, 1215
TatI WGTACW 3 cut(s) 1248, 1337, 1521
TauI GCSGC 1 cut(s) 92
TfiI GAWTC 2 cut(s) 121, 1451
Tru1I TTAA 2 cut(s) 542, 612
Tru9I TTAA 2 cut(s) 542, 612
TscAI CASTG 2 cut(s) 61, 503
TseFI GTSAC 4 cut(s) 484, 602, 844, 950
TseI GCWGC 9 cut(s) 92, 95, 98, 101, 176, 197, 763, 878, 893
Tsp45I GTSAC 4 cut(s) 484, 602, 844, 950
TspDTI ATGAA 5 cut(s) 16, 145, 347, 1359, 1458
TspRI CASTG 2 cut(s) 61, 503
VpaK11BI GGWCC 1 cut(s) 218
XapI RAATTY 4 cut(s) 431, 787, 998, 1215
XbaI TCTAGA 1 cut(s) 1036
XceI RCATGY 1 cut(s) 1132
XspI CTAG 3 cut(s) 900, 1037, 1098
ZrmI AGTACT 1 cut(s) 1523
Zsp2I ATGCAT 1 cut(s) 1134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.