Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009816.1

Orthogroup ID

OG0005710

Physical Location & Seq

Genomic Coordinates Reverse (-)

21456 .. 22214

Gene Structure 759 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009816.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

atggataccatgttctccatcaccaacaccaacaccccaaacaccaccatcccatctcccaaaccacctcaaactccaccaccgttcagaacccacctccccattccaccctccaagccactcctaactaccttaaccaccaccgctgcaactgctgccatcctaactaccactccaccctcattagcagactccccaacttaccaaatttactaccgcaccaccgccagcgctgccaactatggcggatacgatggcaactccgacaagaagacttcagccgatgaattctacaatccgaagaagaagatggagaaaaagtacatgtcttacctcggtgggttttggcaactagctacgaaggacgtggtgctgagcaatctagctctgtcagacatgaacttacaggacttgatagctagtgttgatgccattacgtcggaggagaagaaagacgagaagggacaggtttactatgtgtatgagataaatgaggttgcagcacatagtttgatatcaatgacttgtgctaacaacaagctttatgctcattttgtcaatgcgcctacccccgagtggaaccgcaacaatgatatgttgaagcatgttcattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PsbP

Protein Analysis

204

Amino Acids

22.66

Weight (kDa)

6.51

Isoelectric Point (pI)

35.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005710)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63540
fragaria_vesca	FvH4_7g00900
malus_domestica	MD02G1313800.v1.1 MD07G1008600.v1.1
prunus_persica	Prupe.2G012000_v2.0.a1
pyrus_communis	pycom02g26310 pycom07g00740
rosa_chinensis	RchiOBHm_Chr1g0315791 RchiOBHm_Chr3g0473601
rosa_laevigata	RLG00000024001 RLG00000030732
rosa_multiflora	Rmu_co8131984.1_g000001 Rmu_sc0003069.1_g000013 Rmu_sc0009816.1_g000005 Rmu_sc0033628.1_g000002 Rmu_ssc0000154.1_g000002
rosa_roxburghii	Rroxscaffold_6G00408030
rosa_rugosa	Rorug01G0005600 Rorug03G0133200
rosa_samantha	Rh1AG016500 Rh1BG008900 Rh1CG013800 Rh3AG184900 Rh3BG212900 Rh3CG209400 Rh3DG208700
rosa_wichuraiana	Rw1G000970 Rw3G015960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	144, 217, 225, 246, 583
AcsI	RAATTY	2 cut(s)	207, 287
AcuI	CTGAAG	1 cut(s)	261
AfaI	GTAC	1 cut(s)	323
AfeI	AGCGCT	1 cut(s)	232
AfiI	CCNNNNNNNGG	1 cut(s)	576
AflIII	ACRYGT	1 cut(s)	324
AgsI	TTSAA	1 cut(s)	601
AjiI	CACGTC	1 cut(s)	367
AloI	GAACNNNNNNTCC	1 cut(s)	28
AluBI	AGCT	4 cut(s)	356, 386, 419, 541
AluI	AGCT	4 cut(s)	356, 386, 419, 541
Ama87I	CYCGRG	1 cut(s)	572
Aor51HI	AGCGCT	1 cut(s)	232
ApeKI	GCWGC	4 cut(s)	146, 155, 233, 500
ApoI	RAATTY	2 cut(s)	207, 287
AspLEI	GCGC	2 cut(s)	233, 565
AsuHPI	GGTGA	1 cut(s)	13
AvaI	CYCGRG	1 cut(s)	572
BbsI	GAAGAC	1 cut(s)	278
BbvI	GCAGC	4 cut(s)	133, 142, 220, 512
BccI	CCATC	6 cut(s)	26, 56, 61, 167, 248, 304
BciVI	GTATCC	1 cut(s)	242
BfaI	CTAG	3 cut(s)	353, 383, 420
BfoI	RGCGCY	1 cut(s)	234
BfuI	GTATCC	1 cut(s)	242
BisI	GCNGC	4 cut(s)	147, 156, 234, 501
BlpI	GCTNAGC	1 cut(s)	374
BlsI	GCNGC	4 cut(s)	148, 157, 235, 502
BmeT110I	CYCGRG	1 cut(s)	572
BmgBI	CACGTC	1 cut(s)	367
BmiI	GGNNCC	1 cut(s)	581
BmsI	GCATC	1 cut(s)	418
BpiI	GAAGAC	1 cut(s)	278
Bpu1102I	GCTNAGC	1 cut(s)	374
BsaJI	CCNNGG	1 cut(s)	334
BsaXI	ACNNNNNCTCC	4 cut(s)	157, 187, 305, 335
Bsc4I	CCNNNNNNNGG	1 cut(s)	576
BseDI	CCNNGG	1 cut(s)	334
BseGI	GGATG	2 cut(s)	48, 159
BseLI	CCNNNNNNNGG	1 cut(s)	576
BseMII	CTCAG	1 cut(s)	365
BseRI	GAGGAG	1 cut(s)	458
BseXI	GCAGC	4 cut(s)	133, 142, 220, 512
BsiHKCI	CYCGRG	1 cut(s)	572
BslFI	GGGAC	1 cut(s)	477
BslI	CCNNNNNNNGG	1 cut(s)	576
BsmFI	GGGAC	1 cut(s)	477
BsoBI	CYCGRG	1 cut(s)	572
Bsp1720I	GCTNAGC	1 cut(s)	374
BspACI	CCGC	5 cut(s)	144, 217, 225, 246, 583
BspCNI	CTCAG	1 cut(s)	366
BspLI	GGNNCC	1 cut(s)	581
BssECI	CCNNGG	1 cut(s)	334
Bst4CI	ACNGT	1 cut(s)	84
BstAPI	GCANNNNNTGC	1 cut(s)	155
BstC8I	GCNNGC	1 cut(s)	229
BstDEI	CTNAG	1 cut(s)	374
BstF5I	GGATG	2 cut(s)	48, 159
BstH2I	RGCGCY	1 cut(s)	234
BstHHI	GCGC	2 cut(s)	233, 565
BstMWI	GCNNNNNNNGC	3 cut(s)	152, 155, 233
BstNSI	RCATGY	2 cut(s)	328, 608
BstV1I	GCAGC	4 cut(s)	133, 142, 220, 512
BstV2I	GAAGAC	1 cut(s)	278
BsuI	GTATCC	1 cut(s)	242
BtrI	CACGTC	1 cut(s)	367
BtsCI	GGATG	2 cut(s)	48, 159
Cac8I	GCNNGC	1 cut(s)	229
CfoI	GCGC	2 cut(s)	233, 565
Csp6I	GTAC	1 cut(s)	322
CviAII	CATG	4 cut(s)	10, 325, 397, 605
CviJI	RGCY	6 cut(s)	118, 281, 356, 386, 419, 541
CviKI_1	RGCY	6 cut(s)	118, 281, 356, 386, 419, 541
CviQI	GTAC	1 cut(s)	322
DdeI	CTNAG	1 cut(s)	374
EciI	GGCGGA	1 cut(s)	261
Eco32I	GATATC	1 cut(s)	516
Eco47III	AGCGCT	1 cut(s)	232
Eco57I	CTGAAG	1 cut(s)	261
Eco88I	CYCGRG	1 cut(s)	572
EcoRI	GAATTC	1 cut(s)	287
EcoRV	GATATC	1 cut(s)	516
FaeI	CATG	4 cut(s)	13, 328, 400, 608
FaqI	GGGAC	1 cut(s)	477
FatI	CATG	4 cut(s)	9, 324, 396, 604
Fnu4HI	GCNGC	4 cut(s)	147, 156, 234, 501
FokI	GGATG	2 cut(s)	35, 146
Fsp4HI	GCNGC	4 cut(s)	147, 156, 234, 501
FspBI	CTAG	3 cut(s)	353, 383, 420
GlaI	GCGC	2 cut(s)	232, 564
GluI	GCNGC	4 cut(s)	147, 156, 234, 501
HaeII	RGCGCY	1 cut(s)	234
HhaI	GCGC	2 cut(s)	233, 565
Hin1II	CATG	4 cut(s)	13, 328, 400, 608
Hin6I	GCGC	2 cut(s)	231, 563
HinP1I	GCGC	2 cut(s)	231, 563
HindIII	AAGCTT	1 cut(s)	539
HinfI	GANTC	1 cut(s)	191
HphI	GGTGA	1 cut(s)	13
Hpy166II	GTNNAC	1 cut(s)	472
Hpy188I	TCNGA	5 cut(s)	89, 265, 300, 394, 442
Hpy8I	GTNNAC	1 cut(s)	472
Hpy99I	CGWCG	1 cut(s)	442
HpyAV	CCTTC	2 cut(s)	355, 454
HpyCH4III	ACNGT	1 cut(s)	84
HpyCH4IV	ACGT	2 cut(s)	366, 437
HpyCH4V	TGCA	2 cut(s)	149, 500
HpyF10VI	GCNNNNNNNGC	3 cut(s)	152, 155, 233
HpyF3I	CTNAG	1 cut(s)	374
HpySE526I	ACGT	2 cut(s)	366, 437
Hsp92II	CATG	4 cut(s)	13, 328, 400, 608
HspAI	GCGC	2 cut(s)	231, 563
LpnPI	CCDG	3 cut(s)	241, 392, 452
Lsp1109I	GCAGC	4 cut(s)	133, 142, 220, 512
LweI	GCATC	1 cut(s)	418
MaeI	CTAG	3 cut(s)	353, 383, 420
MaeII	ACGT	2 cut(s)	366, 437
MboII	GAAGA	5 cut(s)	283, 313, 316, 319, 460
MluCI	AATT	2 cut(s)	207, 287
MlyI	GAGTC	1 cut(s)	185
MmeI	TCCRAC	2 cut(s)	288, 420
MnlI	CCTC	7 cut(s)	78, 107, 121, 190, 344, 436, 487
MseI	TTAA	1 cut(s)	134
MspA1I	CMGCKG	1 cut(s)	146
MwoI	GCNNNNNNNGC	3 cut(s)	152, 155, 233
NlaIII	CATG	4 cut(s)	13, 328, 400, 608
NlaIV	GGNNCC	1 cut(s)	581
NspI	RCATGY	2 cut(s)	328, 608
PciI	ACATGT	1 cut(s)	324
PkrI	GCNGC	4 cut(s)	148, 157, 235, 502
PleI	GAGTC	1 cut(s)	185
PpsI	GAGTC	1 cut(s)	185
PscI	ACATGT	1 cut(s)	324
PspN4I	GGNNCC	1 cut(s)	581
RsaI	GTAC	1 cut(s)	323
RsaNI	GTAC	1 cut(s)	322
SaqAI	TTAA	1 cut(s)	134
SatI	GCNGC	4 cut(s)	147, 156, 234, 501
SchI	GAGTC	1 cut(s)	185
SfaNI	GCATC	1 cut(s)	418
Sse9I	AATT	2 cut(s)	207, 287
SsiI	CCGC	5 cut(s)	144, 217, 225, 246, 583
SspMI	CTAG	3 cut(s)	353, 383, 420
TaaI	ACNGT	1 cut(s)	84
TaiI	ACGT	2 cut(s)	369, 440
TasI	AATT	2 cut(s)	207, 287
TatI	WGTACW	1 cut(s)	321
Tru1I	TTAA	1 cut(s)	134
Tru9I	TTAA	1 cut(s)	134
TseI	GCWGC	4 cut(s)	146, 155, 233, 500
TspDTI	ATGAA	3 cut(s)	300, 413, 599
XapI	RAATTY	2 cut(s)	207, 287
XceI	RCATGY	2 cut(s)	328, 608
XspI	CTAG	3 cut(s)	353, 383, 420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.