Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005710

Physical Location & Seq

Genomic Coordinates Forward (+)

19421851 .. 19422903

Gene Structure 1053 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ43926

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGCTACCATGTTTTCCACCACGAACAGCAACACCCCAAACACCACCATCCCATCTCCCAAACCACCTCAAACTCCACCACCGTCCAGAACAACCCACCTCCCCATTCCACCCTCCAAGCCACTCTTAACTACCTTAACCGCCACCGCCGCAGCTGCCGCCATCCTGACTGCCACTCCACCCTCATTAGCAGACTCCCCAACTTACCAAATTTACTACGGCACCGCCGCCAGCGCGGCCAACTACGGCGGATACGGTGGCAACTCCGACAAGAAGACTTCCGCCGAGTATGTCTATGACGTCCCAGACGGTTGGAAAGAGCGTTTAGTATCAAAAGTCGAAAAAGGTACAAATGGAACTGACAGTGAATTCTACAACCCGAAGAAGAAGACGGAGAAAGAGTACCTGACATACCTCGGTGGGTTTCGGCAGCTAGCTCCCAAGGACGTGGTGCTGAACAATCTAGCTCTGTCAGACGTGAGCTTGCAGGACTTGATAGCCAGTGCCGATGAGGTGACGTCGGAGGAGAAGAAAGACGACAAGGGACAGGTTTACTATGTGTATGAGATCAATGGGGTTGCTGCACATAGTTTGATTTCGGTCACTTGTGCTAACAACAAGCTTTATGCTCATTTTGTCAATGCGCCTACCCCGAGTGGAACCGCGACAATGATATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PsbP

Protein Analysis

226

Amino Acids

24.18

Weight (kDa)

5.92

Isoelectric Point (pI)

31.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005710)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63540
fragaria_vesca	FvH4_7g00900
malus_domestica	MD02G1313800.v1.1 MD07G1008600.v1.1
prunus_persica	Prupe.2G012000_v2.0.a1
pyrus_communis	pycom02g26310 pycom07g00740
rosa_chinensis	RchiOBHm_Chr1g0315791 RchiOBHm_Chr3g0473601
rosa_laevigata	RLG00000024001 RLG00000030732
rosa_multiflora	Rmu_co8131984.1_g000001 Rmu_sc0003069.1_g000013 Rmu_sc0009816.1_g000005 Rmu_sc0033628.1_g000002 Rmu_ssc0000154.1_g000002
rosa_roxburghii	Rroxscaffold_6G00408030
rosa_rugosa	Rorug01G0005600 Rorug03G0133200
rosa_samantha	Rh1AG016500 Rh1BG008900 Rh1CG013800 Rh3AG184900 Rh3BG212900 Rh3CG209400 Rh3DG208700
rosa_wichuraiana	Rw1G000970 Rw3G015960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	303, 521
AccB1I	GGYRCC	1 cut(s)	221
AccII	CGCG	2 cut(s)	236, 665
AcoI	YGGCCR	1 cut(s)	237
AcsI	RAATTY	2 cut(s)	210, 368
AcyI	GRCGYC	2 cut(s)	300, 518
AfaI	GTAC	2 cut(s)	349, 404
AjiI	CACGTC	2 cut(s)	448, 478
AluBI	AGCT	6 cut(s)	155, 433, 437, 467, 483, 622
AluI	AGCT	6 cut(s)	155, 433, 437, 467, 483, 622
Ama87I	CYCGRG	1 cut(s)	652
AoxI	GGCC	1 cut(s)	237
ApeKI	GCWGC	4 cut(s)	152, 155, 430, 581
ApoI	RAATTY	2 cut(s)	210, 368
AspLEI	GCGC	2 cut(s)	236, 646
AsuHPI	GGTGA	1 cut(s)	526
AsuNHI	GCTAGC	1 cut(s)	433
AvaI	CYCGRG	1 cut(s)	652
BanI	GGYRCC	1 cut(s)	221
BbsI	GAAGAC	2 cut(s)	281, 395
BbvI	GCAGC	4 cut(s)	142, 164, 442, 568
BccI	CCATC	3 cut(s)	56, 61, 170
BceAI	ACGGC	2 cut(s)	235, 262
BciVI	GTATCC	1 cut(s)	245
BfaI	CTAG	2 cut(s)	434, 464
BfuI	GTATCC	1 cut(s)	245
BglI	GCCNNNNNGGC	1 cut(s)	236
BisI	GCNGC	8 cut(s)	150, 153, 156, 159, 228, 237, 431, 582
BlsI	GCNGC	8 cut(s)	151, 154, 157, 160, 229, 238, 432, 583
BmeT110I	CYCGRG	1 cut(s)	652
BmgBI	CACGTC	2 cut(s)	448, 478
BmiI	GGNNCC	2 cut(s)	223, 661
BmtI	GCTAGC	1 cut(s)	437
BpiI	GAAGAC	2 cut(s)	281, 395
BsaHI	GRCGYC	2 cut(s)	300, 518
BsaJI	CCNNGG	2 cut(s)	415, 441
BsaXI	ACNNNNNCTCC	4 cut(s)	160, 190, 386, 416
Bse1I	ACTGG	1 cut(s)	501
BseDI	CCNNGG	2 cut(s)	415, 441
BseGI	GGATG	2 cut(s)	48, 162
BseNI	ACTGG	1 cut(s)	501
BseRI	GAGGAG	1 cut(s)	539
BseXI	GCAGC	4 cut(s)	142, 164, 442, 568
BsgI	GTGCAG	1 cut(s)	567
Bsh1236I	CGCG	2 cut(s)	236, 665
BshFI	GGCC	1 cut(s)	239
BshNI	GGYRCC	1 cut(s)	221
BsiHKCI	CYCGRG	1 cut(s)	652
BslFI	GGGAC	2 cut(s)	287, 558
BsmFI	GGGAC	2 cut(s)	287, 558
BsnI	GGCC	1 cut(s)	239
BsoBI	CYCGRG	1 cut(s)	652
Bsp143I	GATC	1 cut(s)	567
BspANI	GGCC	1 cut(s)	239
BspFNI	CGCG	2 cut(s)	236, 665
BspLI	GGNNCC	2 cut(s)	223, 661
BspOI	GCTAGC	1 cut(s)	437
BspT107I	GGYRCC	1 cut(s)	221
BsrI	ACTGG	1 cut(s)	501
BssECI	CCNNGG	2 cut(s)	415, 441
BssMI	GATC	1 cut(s)	567
BssNI	GRCGYC	2 cut(s)	300, 518
BssT1I	CCWWGG	1 cut(s)	441
Bst4CI	ACNGT	4 cut(s)	84, 257, 311, 365
BstACI	GRCGYC	2 cut(s)	300, 518
BstC8I	GCNNGC	3 cut(s)	232, 435, 485
BstF5I	GGATG	2 cut(s)	48, 162
BstFNI	CGCG	2 cut(s)	236, 665
BstHHI	GCGC	2 cut(s)	236, 646
BstKTI	GATC	1 cut(s)	570
BstMBI	GATC	1 cut(s)	567
BstMWI	GCNNNNNNNGC	5 cut(s)	149, 155, 158, 233, 236
BstUI	CGCG	2 cut(s)	236, 665
BstV1I	GCAGC	4 cut(s)	142, 164, 442, 568
BstV2I	GAAGAC	2 cut(s)	281, 395
BstXI	CCANNNNNNTGG	2 cut(s)	312, 448
BsuI	GTATCC	1 cut(s)	245
BsuRI	GGCC	1 cut(s)	239
BtrI	CACGTC	2 cut(s)	448, 478
BtsCI	GGATG	2 cut(s)	48, 162
BtsIMutI	CAGTG	2 cut(s)	370, 508
Cac8I	GCNNGC	3 cut(s)	232, 435, 485
CfoI	GCGC	2 cut(s)	236, 646
Csp6I	GTAC	2 cut(s)	348, 403
CviAII	CATG	1 cut(s)	10
CviQI	GTAC	2 cut(s)	348, 403
DpnI	GATC	1 cut(s)	569
DpnII	GATC	1 cut(s)	567
EaeI	YGGCCR	1 cut(s)	237
EciI	GGCGGA	2 cut(s)	264, 271
Eco130I	CCWWGG	1 cut(s)	441
Eco88I	CYCGRG	1 cut(s)	652
EcoRI	GAATTC	1 cut(s)	368
EcoT14I	CCWWGG	1 cut(s)	441
ErhI	CCWWGG	1 cut(s)	441
FaeI	CATG	1 cut(s)	13
FaiI	YATR	9 cut(s)	11, 291, 297, 412, 558, 564, 588, 627, 676
FalI	AAGNNNNNCTT	2 cut(s)	110, 142
FaqI	GGGAC	2 cut(s)	287, 558
FatI	CATG	1 cut(s)	9
Fnu4HI	GCNGC	8 cut(s)	150, 153, 156, 159, 228, 237, 431, 582
FokI	GGATG	2 cut(s)	35, 149
Fsp4HI	GCNGC	8 cut(s)	150, 153, 156, 159, 228, 237, 431, 582
FspBI	CTAG	2 cut(s)	434, 464
GlaI	GCGC	2 cut(s)	235, 645
GluI	GCNGC	8 cut(s)	150, 153, 156, 159, 228, 237, 431, 582
HaeIII	GGCC	1 cut(s)	239
HhaI	GCGC	2 cut(s)	236, 646
Hin1I	GRCGYC	2 cut(s)	300, 518
Hin1II	CATG	1 cut(s)	13
Hin6I	GCGC	2 cut(s)	234, 644
HinP1I	GCGC	2 cut(s)	234, 644
HindIII	AAGCTT	1 cut(s)	620
HinfI	GANTC	1 cut(s)	194
HphI	GGTGA	1 cut(s)	526
Hpy166II	GTNNAC	1 cut(s)	553
Hpy188I	TCNGA	3 cut(s)	268, 475, 523
Hpy188III	TCNNGA	2 cut(s)	87, 166
Hpy8I	GTNNAC	1 cut(s)	553
Hpy99I	CGWCG	1 cut(s)	523
HpyCH4III	ACNGT	4 cut(s)	84, 257, 311, 365
HpyCH4IV	ACGT	4 cut(s)	300, 447, 477, 518
HpyCH4V	TGCA	2 cut(s)	487, 584
HpyF10VI	GCNNNNNNNGC	5 cut(s)	149, 155, 158, 233, 236
HpySE526I	ACGT	4 cut(s)	300, 447, 477, 518
Hsp92I	GRCGYC	2 cut(s)	300, 518
Hsp92II	CATG	1 cut(s)	13
HspAI	GCGC	2 cut(s)	234, 644
Kzo9I	GATC	1 cut(s)	567
LmnI	GCTCC	1 cut(s)	442
LpnPI	CCDG	8 cut(s)	100, 179, 244, 318, 419, 473, 514, 533
Lsp1109I	GCAGC	4 cut(s)	142, 164, 442, 568
MaeI	CTAG	2 cut(s)	434, 464
MaeII	ACGT	4 cut(s)	300, 447, 477, 518
MaeIII	GTNAC	2 cut(s)	514, 601
MalI	GATC	1 cut(s)	569
MboI	GATC	1 cut(s)	567
MboII	GAAGA	5 cut(s)	286, 394, 397, 400, 541
MluCI	AATT	2 cut(s)	210, 368
MlyI	GAGTC	1 cut(s)	188
MmeI	TCCRAC	3 cut(s)	291, 293, 501
MnlI	CCTC	7 cut(s)	78, 110, 124, 193, 425, 505, 517
MseI	TTAA	2 cut(s)	128, 137
MspA1I	CMGCKG	1 cut(s)	155
MvnI	CGCG	2 cut(s)	236, 665
MwoI	GCNNNNNNNGC	5 cut(s)	149, 155, 158, 233, 236
NdeII	GATC	1 cut(s)	567
NheI	GCTAGC	1 cut(s)	433
NlaIII	CATG	1 cut(s)	13
NlaIV	GGNNCC	2 cut(s)	223, 661
NmeAIII	GCCGAG	1 cut(s)	310
NmuCI	GTSAC	2 cut(s)	514, 601
PkrI	GCNGC	8 cut(s)	151, 154, 157, 160, 229, 238, 432, 583
PleI	GAGTC	1 cut(s)	188
PpsI	GAGTC	1 cut(s)	188
PspN4I	GGNNCC	2 cut(s)	223, 661
PvuII	CAGCTG	1 cut(s)	155
RsaI	GTAC	2 cut(s)	349, 404
RsaNI	GTAC	2 cut(s)	348, 403
SaqAI	TTAA	2 cut(s)	128, 137
SatI	GCNGC	8 cut(s)	150, 153, 156, 159, 228, 237, 431, 582
Sau3AI	GATC	1 cut(s)	567
SchI	GAGTC	1 cut(s)	188
Sse9I	AATT	2 cut(s)	210, 368
SspMI	CTAG	2 cut(s)	434, 464
StyI	CCWWGG	1 cut(s)	441
TaaI	ACNGT	4 cut(s)	84, 257, 311, 365
TaiI	ACGT	4 cut(s)	303, 450, 480, 521
TaqI	TCGA	1 cut(s)	339
TaqII	GACCGA	1 cut(s)	589
TasI	AATT	2 cut(s)	210, 368
TauI	GCSGC	4 cut(s)	152, 161, 230, 239
Tru1I	TTAA	2 cut(s)	128, 137
Tru9I	TTAA	2 cut(s)	128, 137
TscAI	CASTG	2 cut(s)	370, 508
TseFI	GTSAC	2 cut(s)	514, 601
TseI	GCWGC	4 cut(s)	152, 155, 430, 581
Tsp45I	GTSAC	2 cut(s)	514, 601
TspGWI	ACGGA	1 cut(s)	407
TspRI	CASTG	2 cut(s)	370, 508
XapI	RAATTY	2 cut(s)	210, 368
XspI	CTAG	2 cut(s)	434, 464
ZraI	GACGTC	2 cut(s)	301, 519

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.