Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0005710

Physical Location & Seq

Genomic Coordinates Forward (+)

1034512 .. 1042192

Gene Structure 7681 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG008900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGTGAATACCATGGCAACTCCAACAAAAAGACTTCGGCCGAGTACAAATGGAATTGACAGTGAATTCTACAATCCGAAGAAGAAGACGGTGAAAGAGTACCTGTCTTACCTAGGTGGGTTTCAGCAGCTAGCTACGAAGGTCGTGGTGCTGAACAATCTAGCTCTGTCAAACGTGAACTTGCAGGACTTGATAGCTAGTGCTGATGCCGTGACGTCGGAGGAGAAGAAAGACGAGAAGGGACAGGTTTACTATGTGTATGAGATCAATGGGGTCGCAACACATAGTTTCATTTCAGTGACTTGTGCTAACAACAAGCTTTATGCTCATTTTGTCAATGCGCCTACCCCCGAGTGGAACCACGACAATGATATGTTGAAGCATATCTGCAAATGGCGTTTAGTTCGTAGGTCGATGTGCAGTGTAAGGATACAGAGTTCAAACGAAATAAAGGGTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PsbP

Protein Analysis

153

Amino Acids

17.27

Weight (kDa)

9.11

Isoelectric Point (pI)

39.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005710)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63540
fragaria_vesca	FvH4_7g00900
malus_domestica	MD02G1313800.v1.1 MD07G1008600.v1.1
prunus_persica	Prupe.2G012000_v2.0.a1
pyrus_communis	pycom02g26310 pycom07g00740
rosa_chinensis	RchiOBHm_Chr1g0315791 RchiOBHm_Chr3g0473601
rosa_laevigata	RLG00000024001 RLG00000030732
rosa_multiflora	Rmu_co8131984.1_g000001 Rmu_sc0003069.1_g000013 Rmu_sc0009816.1_g000005 Rmu_sc0033628.1_g000002 Rmu_ssc0000154.1_g000002
rosa_roxburghii	Rroxscaffold_6G00408030
rosa_rugosa	Rorug01G0005600 Rorug03G0133200
rosa_samantha	Rh1AG016500 Rh1BG008900 Rh1CG013800 Rh3AG184900 Rh3BG212900 Rh3CG209400 Rh3DG208700
rosa_wichuraiana	Rw1G000970 Rw3G015960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	218
AcoI	YGGCCR	1 cut(s)	38
AcsI	RAATTY	1 cut(s)	65
AcyI	GRCGYC	1 cut(s)	215
AfaI	GTAC	2 cut(s)	46, 101
AfiI	CCNNNNNNNGG	1 cut(s)	354
AgsI	TTSAA	2 cut(s)	379, 441
AloI	GAACNNNNNNTCC	2 cut(s)	421, 453
AluBI	AGCT	5 cut(s)	130, 134, 164, 197, 319
AluI	AGCT	5 cut(s)	130, 134, 164, 197, 319
Ama87I	CYCGRG	1 cut(s)	350
AoxI	GGCC	1 cut(s)	38
ApeKI	GCWGC	1 cut(s)	127
ApoI	RAATTY	1 cut(s)	65
AspA2I	CCTAGG	1 cut(s)	112
AspLEI	GCGC	1 cut(s)	343
AsuHPI	GGTGA	2 cut(s)	16, 103
AsuNHI	GCTAGC	1 cut(s)	130
AvaI	CYCGRG	1 cut(s)	350
AvrII	CCTAGG	1 cut(s)	112
BbsI	GAAGAC	1 cut(s)	92
BbvI	GCAGC	1 cut(s)	139
BceAI	ACGGC	1 cut(s)	194
BciVI	GTATCC	1 cut(s)	423
BfaI	CTAG	4 cut(s)	113, 131, 161, 198
BfuI	GTATCC	1 cut(s)	423
BisI	GCNGC	1 cut(s)	128
BlnI	CCTAGG	1 cut(s)	112
BlsI	GCNGC	1 cut(s)	129
BmeT110I	CYCGRG	1 cut(s)	350
BmiI	GGNNCC	1 cut(s)	359
BmsI	GCATC	1 cut(s)	196
BmtI	GCTAGC	1 cut(s)	134
BpiI	GAAGAC	1 cut(s)	92
BsaHI	GRCGYC	1 cut(s)	215
BsaJI	CCNNGG	2 cut(s)	12, 112
Bsc4I	CCNNNNNNNGG	1 cut(s)	354
BseDI	CCNNGG	2 cut(s)	12, 112
BseLI	CCNNNNNNNGG	1 cut(s)	354
BseRI	GAGGAG	1 cut(s)	236
BseX3I	CGGCCG	1 cut(s)	38
BseXI	GCAGC	1 cut(s)	139
BsgI	GTGCAG	1 cut(s)	439
Bsh1285I	CGRYCG	1 cut(s)	41
BshFI	GGCC	1 cut(s)	40
BsiEI	CGRYCG	1 cut(s)	41
BsiHKCI	CYCGRG	1 cut(s)	350
BslFI	GGGAC	1 cut(s)	255
BslI	CCNNNNNNNGG	1 cut(s)	354
BsmFI	GGGAC	1 cut(s)	255
BsnI	GGCC	1 cut(s)	40
BsoBI	CYCGRG	1 cut(s)	350
Bsp143I	GATC	1 cut(s)	264
Bsp19I	CCATGG	1 cut(s)	12
BspANI	GGCC	1 cut(s)	40
BspLI	GGNNCC	1 cut(s)	359
BspOI	GCTAGC	1 cut(s)	134
BssECI	CCNNGG	2 cut(s)	12, 112
BssMI	GATC	1 cut(s)	264
BssNI	GRCGYC	1 cut(s)	215
BssT1I	CCWWGG	2 cut(s)	12, 112
Bst4CI	ACNGT	2 cut(s)	62, 91
BstACI	GRCGYC	1 cut(s)	215
BstC8I	GCNNGC	1 cut(s)	132
BstDSI	CCRYGG	1 cut(s)	12
BstHHI	GCGC	1 cut(s)	343
BstKTI	GATC	1 cut(s)	267
BstMBI	GATC	1 cut(s)	264
BstMCI	CGRYCG	1 cut(s)	41
BstV1I	GCAGC	1 cut(s)	139
BstV2I	GAAGAC	1 cut(s)	92
BstZI	CGGCCG	1 cut(s)	38
BsuI	GTATCC	1 cut(s)	423
BsuRI	GGCC	1 cut(s)	40
BtgI	CCRYGG	1 cut(s)	12
BtsI	GCAGTG	1 cut(s)	427
BtsIMutI	CAGTG	3 cut(s)	67, 303, 427
Cac8I	GCNNGC	1 cut(s)	132
CfoI	GCGC	1 cut(s)	343
Csp6I	GTAC	2 cut(s)	45, 100
CviAII	CATG	1 cut(s)	13
CviJI	RGCY	6 cut(s)	40, 130, 134, 164, 197, 319
CviKI_1	RGCY	6 cut(s)	40, 130, 134, 164, 197, 319
CviQI	GTAC	2 cut(s)	45, 100
DpnI	GATC	1 cut(s)	266
DpnII	GATC	1 cut(s)	264
EaeI	YGGCCR	1 cut(s)	38
EagI	CGGCCG	1 cut(s)	38
EclXI	CGGCCG	1 cut(s)	38
Eco130I	CCWWGG	2 cut(s)	12, 112
Eco52I	CGGCCG	1 cut(s)	38
Eco88I	CYCGRG	1 cut(s)	350
EcoRI	GAATTC	1 cut(s)	65
EcoT14I	CCWWGG	2 cut(s)	12, 112
ErhI	CCWWGG	2 cut(s)	12, 112
FaeI	CATG	1 cut(s)	16
FaiI	YATR	8 cut(s)	14, 255, 261, 285, 324, 374, 384, 460
FaqI	GGGAC	1 cut(s)	255
FatI	CATG	1 cut(s)	12
Fnu4HI	GCNGC	1 cut(s)	128
Fsp4HI	GCNGC	1 cut(s)	128
FspBI	CTAG	4 cut(s)	113, 131, 161, 198
GlaI	GCGC	1 cut(s)	342
GluI	GCNGC	1 cut(s)	128
HaeIII	GGCC	1 cut(s)	40
HhaI	GCGC	1 cut(s)	343
Hin1I	GRCGYC	1 cut(s)	215
Hin1II	CATG	1 cut(s)	16
Hin6I	GCGC	1 cut(s)	341
HinP1I	GCGC	1 cut(s)	341
HindIII	AAGCTT	1 cut(s)	317
HphI	GGTGA	2 cut(s)	16, 103
Hpy166II	GTNNAC	2 cut(s)	178, 250
Hpy188I	TCNGA	2 cut(s)	78, 220
Hpy8I	GTNNAC	2 cut(s)	178, 250
Hpy99I	CGWCG	1 cut(s)	220
HpyAV	CCTTC	2 cut(s)	133, 232
HpyCH4III	ACNGT	2 cut(s)	62, 91
HpyCH4IV	ACGT	2 cut(s)	174, 215
HpyCH4V	TGCA	4 cut(s)	184, 390, 420, 458
HpySE526I	ACGT	2 cut(s)	174, 215
Hsp92I	GRCGYC	1 cut(s)	215
Hsp92II	CATG	1 cut(s)	16
HspAI	GCGC	1 cut(s)	341
Kzo9I	GATC	1 cut(s)	264
LpnPI	CCDG	3 cut(s)	116, 170, 230
Lsp1109I	GCAGC	1 cut(s)	139
LweI	GCATC	1 cut(s)	196
MaeI	CTAG	4 cut(s)	113, 131, 161, 198
MaeII	ACGT	2 cut(s)	174, 215
MaeIII	GTNAC	2 cut(s)	211, 298
MalI	GATC	1 cut(s)	266
MboI	GATC	1 cut(s)	264
MboII	GAAGA	4 cut(s)	91, 94, 97, 238
MluCI	AATT	2 cut(s)	54, 65
MmeI	TCCRAC	2 cut(s)	47, 198
MnlI	CCTC	1 cut(s)	214
MslI	CAYNNNNRTG	2 cut(s)	296, 366
NcoI	CCATGG	1 cut(s)	12
NdeII	GATC	1 cut(s)	264
NheI	GCTAGC	1 cut(s)	130
NlaIII	CATG	1 cut(s)	16
NlaIV	GGNNCC	1 cut(s)	359
NmeAIII	GCCGAG	1 cut(s)	66
NmuCI	GTSAC	2 cut(s)	211, 298
PkrI	GCNGC	1 cut(s)	129
PspN4I	GGNNCC	1 cut(s)	359
RsaI	GTAC	2 cut(s)	46, 101
RsaNI	GTAC	2 cut(s)	45, 100
RseI	CAYNNNNRTG	2 cut(s)	296, 366
SatI	GCNGC	1 cut(s)	128
Sau3AI	GATC	1 cut(s)	264
SfaNI	GCATC	1 cut(s)	196
SmiMI	CAYNNNNRTG	2 cut(s)	296, 366
Sse9I	AATT	2 cut(s)	54, 65
SspMI	CTAG	4 cut(s)	113, 131, 161, 198
StyI	CCWWGG	2 cut(s)	12, 112
TaaI	ACNGT	2 cut(s)	62, 91
TaiI	ACGT	2 cut(s)	177, 218
TaqI	TCGA	1 cut(s)	413
TasI	AATT	2 cut(s)	54, 65
TatI	WGTACW	1 cut(s)	44
TscAI	CASTG	3 cut(s)	67, 303, 427
TseFI	GTSAC	2 cut(s)	211, 298
TseI	GCWGC	1 cut(s)	127
Tsp45I	GTSAC	2 cut(s)	211, 298
TspDTI	ATGAA	1 cut(s)	280
TspRI	CASTG	3 cut(s)	67, 303, 427
XapI	RAATTY	1 cut(s)	65
XmaJI	CCTAGG	1 cut(s)	112
XspI	CTAG	4 cut(s)	113, 131, 161, 198
ZraI	GACGTC	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.