Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0005710

Physical Location & Seq

Genomic Coordinates Reverse (-)

24129184 .. 24130077

Gene Structure 894 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g26310.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGCTAACATGTTCTCACCCTCAACCTTCTTCTCCTCCACCACCACCAACACCACCAACAACATCACATCTCCAAAACCATCTCAAACTCCCCTACCGCCCAAATCCCACATCCCTATCCCACCCTCTAAACCACTCTTAACTACCTTAACCGCCACACTAACTGTCACCGCTGCTGCAGCTGCCATCCTAACCGCCCCTCCACCCTCGTTGGCAGACTCCACAGCAGAAACAACTTACCAAATCTACTACGGCACTGCTGCCAGCGCGGCCAACTATGGCGGTTACGGTGGCAACTCCGACAAGAAAGCCTCCGCCGAATATGTCTATGACGTGCCAGATGGATGGAAAGAGCGTTTGGTCTCAAAAGTCGAAAAGGGTACAAATGGGACTGATAGCGAATTTTACAACCCGAAGAAGAAGTCAGAAAAAGAGTACTTGACATTCCTTTCCGGGTTTAGGCAACTAGCACCGAAGGATGCGGTGCTGAACAATTTGGCTCTGTCAGATGTGAACTTGCAGGACTTGCTAGCAAGCGCGGATAATGTGACATCGGAGGAGAGGAAGGACGAGAAGGGACAGGTTTACTATGTGTATGAGATCGATGGAGTTGCTGCTCACAGTTTGATTTCAGTGACTTGTGCTCAGAACAAGCTGTATGCACATTTTGTCAATGCGCCAACGACAGAGTGGAACCGTGACCATGACTTGTTGCAGCATGTTCATGAGTCTTTCAAGACTATTGGATCTTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PsbP

Protein Analysis

252

Amino Acids

27.28

Weight (kDa)

5.68

Isoelectric Point (pI)

35.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005710)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63540
fragaria_vesca	FvH4_7g00900
malus_domestica	MD02G1313800.v1.1 MD07G1008600.v1.1
prunus_persica	Prupe.2G012000_v2.0.a1
pyrus_communis	pycom02g26310 pycom07g00740
rosa_chinensis	RchiOBHm_Chr1g0315791 RchiOBHm_Chr3g0473601
rosa_laevigata	RLG00000024001 RLG00000030732
rosa_multiflora	Rmu_co8131984.1_g000001 Rmu_sc0003069.1_g000013 Rmu_sc0009816.1_g000005 Rmu_sc0033628.1_g000002 Rmu_ssc0000154.1_g000002
rosa_roxburghii	Rroxscaffold_6G00408030
rosa_rugosa	Rorug01G0005600 Rorug03G0133200
rosa_samantha	Rh1AG016500 Rh1BG008900 Rh1CG013800 Rh3AG184900 Rh3BG212900 Rh3CG209400 Rh3DG208700
rosa_wichuraiana	Rw1G000970 Rw3G015960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	269, 539
AciI	CCGC	9 cut(s)	98, 153, 171, 195, 269, 282, 315, 482, 539
AclWI	GGATC	1 cut(s)	754
AcoI	YGGCCR	1 cut(s)	270
AcsI	RAATTY	1 cut(s)	401
AfaI	GTAC	2 cut(s)	382, 437
AfiI	CCNNNNNNNGG	1 cut(s)	459
AflIII	ACRYGT	1 cut(s)	9
AgsI	TTSAA	1 cut(s)	736
AjiI	CACGTC	1 cut(s)	334
AjuI	GAANNNNNNNTTGG	2 cut(s)	341, 373
AluBI	AGCT	2 cut(s)	182, 655
AluI	AGCT	2 cut(s)	182, 655
Alw21I	GWGCWC	1 cut(s)	646
Alw26I	GTCTC	1 cut(s)	367
AlwI	GGATC	1 cut(s)	754
AoxI	GGCC	1 cut(s)	270
ApeKI	GCWGC	7 cut(s)	173, 176, 179, 182, 260, 614, 715
ApoI	RAATTY	1 cut(s)	401
ArsI	GACNNNNNNTTYG	2 cut(s)	407, 439
AspLEI	GCGC	3 cut(s)	269, 539, 679
AsuC2I	CCSGG	1 cut(s)	454
AsuHPI	GGTGA	2 cut(s)	9, 160
AsuNHI	GCTAGC	1 cut(s)	529
Bbv12I	GWGCWC	1 cut(s)	646
BbvI	GCAGC	7 cut(s)	160, 163, 169, 191, 247, 601, 727
BccI	CCATC	5 cut(s)	88, 194, 335, 339, 599
BceAI	ACGGC	1 cut(s)	268
BcgI	CGANNNNNNTGC	2 cut(s)	593, 627
BcnI	CCSGG	1 cut(s)	454
BcoDI	GTCTC	1 cut(s)	367
BfaI	CTAG	2 cut(s)	467, 530
BfmI	CTRYAG	1 cut(s)	177
BglI	GCCNNNNNGGC	1 cut(s)	269
BisI	GCNGC	8 cut(s)	174, 177, 180, 183, 261, 270, 615, 716
BlsI	GCNGC	8 cut(s)	175, 178, 181, 184, 262, 271, 616, 717
BmcAI	AGTACT	1 cut(s)	437
Bme1390I	CCNGG	1 cut(s)	454
BmgBI	CACGTC	1 cut(s)	334
BmiI	GGNNCC	1 cut(s)	695
BmrFI	CCNGG	1 cut(s)	454
BmsI	GCATC	1 cut(s)	469
BmtI	GCTAGC	1 cut(s)	533
BpuMI	CCSGG	1 cut(s)	454
Bsa29I	ATCGAT	1 cut(s)	603
BsaI	GGTCTC	1 cut(s)	367
BsaXI	ACNNNNNCTCC	2 cut(s)	184, 214
Bsc4I	CCNNNNNNNGG	1 cut(s)	459
BseCI	ATCGAT	1 cut(s)	603
BseGI	GGATG	4 cut(s)	111, 186, 350, 484
BseLI	CCNNNNNNNGG	1 cut(s)	459
BseMII	CTCAG	1 cut(s)	659
BseRI	GAGGAG	2 cut(s)	25, 572
BseXI	GCAGC	7 cut(s)	160, 163, 169, 191, 247, 601, 727
Bsh1236I	CGCG	2 cut(s)	269, 539
BshFI	GGCC	1 cut(s)	272
BshVI	ATCGAT	1 cut(s)	603
BsiHKAI	GWGCWC	1 cut(s)	646
BsiSI	CCGG	1 cut(s)	453
BslFI	GGGAC	2 cut(s)	403, 591
BslI	CCNNNNNNNGG	1 cut(s)	459
BsmAI	GTCTC	1 cut(s)	367
BsmFI	GGGAC	2 cut(s)	403, 591
BsnI	GGCC	1 cut(s)	272
Bso31I	GGTCTC	1 cut(s)	367
Bsp1286I	GDGCHC	1 cut(s)	646
Bsp143I	GATC	2 cut(s)	600, 746
BspACI	CCGC	9 cut(s)	98, 153, 171, 195, 269, 282, 315, 482, 539
BspANI	GGCC	1 cut(s)	272
BspCNI	CTCAG	1 cut(s)	658
BspDI	ATCGAT	1 cut(s)	603
BspFNI	CGCG	2 cut(s)	269, 539
BspHI	TCATGA	1 cut(s)	724
BspLI	GGNNCC	1 cut(s)	695
BspMAI	CTGCAG	1 cut(s)	181
BspOI	GCTAGC	1 cut(s)	533
BspPI	GGATC	1 cut(s)	754
BspTNI	GGTCTC	1 cut(s)	367
BssMI	GATC	2 cut(s)	600, 746
Bst4CI	ACNGT	4 cut(s)	166, 290, 623, 698
BstAPI	GCANNNNNTGC	1 cut(s)	526
BstC8I	GCNNGC	3 cut(s)	265, 531, 535
BstDEI	CTNAG	1 cut(s)	645
BstF5I	GGATG	4 cut(s)	111, 186, 350, 484
BstFNI	CGCG	2 cut(s)	269, 539
BstHHI	GCGC	3 cut(s)	269, 539, 679
BstKTI	GATC	2 cut(s)	603, 749
BstMAI	GTCTC	1 cut(s)	367
BstMBI	GATC	2 cut(s)	600, 746
BstMWI	GCNNNNNNNGC	5 cut(s)	179, 182, 266, 269, 526
BstNSI	RCATGY	2 cut(s)	13, 722
BstSCI	CCNGG	1 cut(s)	452
BstSFI	CTRYAG	1 cut(s)	177
BstUI	CGCG	2 cut(s)	269, 539
BstV1I	GCAGC	7 cut(s)	160, 163, 169, 191, 247, 601, 727
BstX2I	RGATCY	1 cut(s)	746
BstXI	CCANNNNNNTGG	1 cut(s)	345
BstYI	RGATCY	1 cut(s)	746
Bsu15I	ATCGAT	1 cut(s)	603
BsuRI	GGCC	1 cut(s)	272
BsuTUI	ATCGAT	1 cut(s)	603
BtrI	CACGTC	1 cut(s)	334
BtsCI	GGATG	4 cut(s)	111, 186, 350, 484
BtsI	GCAGTG	1 cut(s)	255
BtsIMutI	CAGTG	2 cut(s)	255, 639
Cac8I	GCNNGC	3 cut(s)	265, 531, 535
CciI	TCATGA	1 cut(s)	724
CfoI	GCGC	3 cut(s)	269, 539, 679
ClaI	ATCGAT	1 cut(s)	603
Csp6I	GTAC	2 cut(s)	381, 436
CspCI	CAANNNNNGTGG	2 cut(s)	192, 227
CviAII	CATG	4 cut(s)	10, 704, 719, 725
CviJI	RGCY	6 cut(s)	5, 182, 272, 311, 500, 655
CviKI_1	RGCY	6 cut(s)	5, 182, 272, 311, 500, 655
CviQI	GTAC	2 cut(s)	381, 436
DdeI	CTNAG	1 cut(s)	645
DpnI	GATC	2 cut(s)	602, 748
DpnII	GATC	2 cut(s)	600, 746
EaeI	YGGCCR	1 cut(s)	270
EciI	GGCGGA	1 cut(s)	304
Eco31I	GGTCTC	1 cut(s)	367
FaeI	CATG	4 cut(s)	13, 707, 722, 728
FaqI	GGGAC	2 cut(s)	403, 591
FatI	CATG	4 cut(s)	9, 703, 718, 724
Fnu4HI	GCNGC	8 cut(s)	174, 177, 180, 183, 261, 270, 615, 716
FokI	GGATG	4 cut(s)	98, 173, 357, 491
Fsp4HI	GCNGC	8 cut(s)	174, 177, 180, 183, 261, 270, 615, 716
FspBI	CTAG	2 cut(s)	467, 530
GlaI	GCGC	3 cut(s)	268, 538, 678
GluI	GCNGC	8 cut(s)	174, 177, 180, 183, 261, 270, 615, 716
HaeIII	GGCC	1 cut(s)	272
HapII	CCGG	1 cut(s)	453
HhaI	GCGC	3 cut(s)	269, 539, 679
Hin1II	CATG	4 cut(s)	13, 707, 722, 728
Hin6I	GCGC	3 cut(s)	267, 537, 677
HinP1I	GCGC	3 cut(s)	267, 537, 677
HinfI	GANTC	2 cut(s)	218, 728
HpaII	CCGG	1 cut(s)	453
HphI	GGTGA	2 cut(s)	9, 160
Hpy166II	GTNNAC	2 cut(s)	514, 586
Hpy188I	TCNGA	5 cut(s)	301, 427, 508, 556, 648
Hpy188III	TCNNGA	2 cut(s)	725, 736
Hpy8I	GTNNAC	2 cut(s)	514, 586
HpyAV	CCTTC	4 cut(s)	37, 469, 559, 568
HpyCH4III	ACNGT	4 cut(s)	166, 290, 623, 698
HpyCH4IV	ACGT	1 cut(s)	333
HpyCH4V	TGCA	4 cut(s)	179, 520, 662, 715
HpyF10VI	GCNNNNNNNGC	5 cut(s)	179, 182, 266, 269, 526
HpyF3I	CTNAG	1 cut(s)	645
HpySE526I	ACGT	1 cut(s)	333
Hsp92II	CATG	4 cut(s)	13, 707, 722, 728
HspAI	GCGC	3 cut(s)	267, 537, 677
Kzo9I	GATC	2 cut(s)	600, 746
LpnPI	CCDG	5 cut(s)	277, 351, 466, 506, 566
Lsp1109I	GCAGC	7 cut(s)	160, 163, 169, 191, 247, 601, 727
LweI	GCATC	1 cut(s)	469
MaeI	CTAG	2 cut(s)	467, 530
MaeII	ACGT	1 cut(s)	333
MaeIII	GTNAC	5 cut(s)	166, 284, 547, 634, 698
MalI	GATC	2 cut(s)	602, 748
MboI	GATC	2 cut(s)	600, 746
MboII	GAAGA	3 cut(s)	22, 427, 430
MflI	RGATCY	1 cut(s)	746
MhlI	GDGCHC	1 cut(s)	646
MluCI	AATT	2 cut(s)	401, 493
MlyI	GAGTC	2 cut(s)	212, 737
MmeI	TCCRAC	1 cut(s)	324
MnlI	CCTC	8 cut(s)	31, 46, 136, 210, 217, 322, 550, 555
MseI	TTAA	2 cut(s)	140, 149
MslI	CAYNNNNRTG	1 cut(s)	723
MspA1I	CMGCKG	2 cut(s)	173, 182
MspI	CCGG	1 cut(s)	453
MspR9I	CCNGG	1 cut(s)	454
MvnI	CGCG	2 cut(s)	269, 539
MwoI	GCNNNNNNNGC	5 cut(s)	179, 182, 266, 269, 526
NciI	CCSGG	1 cut(s)	454
NdeII	GATC	2 cut(s)	600, 746
NheI	GCTAGC	1 cut(s)	529
NlaIII	CATG	4 cut(s)	13, 707, 722, 728
NlaIV	GGNNCC	1 cut(s)	695
NmuCI	GTSAC	4 cut(s)	166, 547, 634, 698
NspI	RCATGY	2 cut(s)	13, 722
PagI	TCATGA	1 cut(s)	724
PciI	ACATGT	1 cut(s)	9
PkrI	GCNGC	8 cut(s)	175, 178, 181, 184, 262, 271, 616, 717
PleI	GAGTC	2 cut(s)	212, 736
PpsI	GAGTC	2 cut(s)	212, 736
PscI	ACATGT	1 cut(s)	9
PspN4I	GGNNCC	1 cut(s)	695
PstI	CTGCAG	1 cut(s)	181
PsuI	RGATCY	1 cut(s)	746
PvuII	CAGCTG	1 cut(s)	182
RsaI	GTAC	2 cut(s)	382, 437
RsaNI	GTAC	2 cut(s)	381, 436
RseI	CAYNNNNRTG	1 cut(s)	723
SaqAI	TTAA	2 cut(s)	140, 149
SatI	GCNGC	8 cut(s)	174, 177, 180, 183, 261, 270, 615, 716
Sau3AI	GATC	2 cut(s)	600, 746
ScaI	AGTACT	1 cut(s)	437
SchI	GAGTC	2 cut(s)	212, 737
ScrFI	CCNGG	1 cut(s)	454
SduI	GDGCHC	1 cut(s)	646
SetI	ASST	6 cut(s)	29, 149, 184, 336, 585, 657
SfaNI	GCATC	1 cut(s)	469
SfcI	CTRYAG	1 cut(s)	177
SmiMI	CAYNNNNRTG	1 cut(s)	723
Sse9I	AATT	2 cut(s)	401, 493
SsiI	CCGC	9 cut(s)	98, 153, 171, 195, 269, 282, 315, 482, 539
SspMI	CTAG	2 cut(s)	467, 530
StyD4I	CCNGG	1 cut(s)	452
TaaI	ACNGT	4 cut(s)	166, 290, 623, 698
TaiI	ACGT	1 cut(s)	336
TaqI	TCGA	2 cut(s)	372, 603
TasI	AATT	2 cut(s)	401, 493
TatI	WGTACW	1 cut(s)	435
TauI	GCSGC	1 cut(s)	272
Tru1I	TTAA	2 cut(s)	140, 149
Tru9I	TTAA	2 cut(s)	140, 149
TscAI	CASTG	2 cut(s)	262, 639
TseFI	GTSAC	4 cut(s)	166, 547, 634, 698
TseI	GCWGC	7 cut(s)	173, 176, 179, 182, 260, 614, 715
Tsp45I	GTSAC	4 cut(s)	166, 547, 634, 698
TspDTI	ATGAA	1 cut(s)	713
TspRI	CASTG	2 cut(s)	262, 639
XapI	RAATTY	1 cut(s)	401
XceI	RCATGY	2 cut(s)	13, 722
XcmI	CCANNNNNNNNNTGG	1 cut(s)	687
XspI	CTAG	2 cut(s)	467, 530
ZrmI	AGTACT	1 cut(s)	437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.