Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0033628.1

Orthogroup ID

OG0005710

Physical Location & Seq

Genomic Coordinates Reverse (-)

4823 .. 5641

Gene Structure 819 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0033628.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

atggccaccatgttctccaccaccaacaccaacaccccaaacaccaccatcccatctcccaaaccacctcaaactccaccaccgtccagaacaacccacctccccgttccaccctccaagcagccactcttaactaccttaaccgccaccgccgcagctgccgccatcctaactgccactccaccctcattagcagactccccaacttaccaaatttactacggcaccgccgccagcgcggccaactacggcggatacggtggcaactccgacaagaagacttccgccgagtatatctatgacgtcccagacggttggaaagagcgtttagtatcaaaagtcgaaaaaggtacaaatggaactgacagtgaattctacaacccgaagaagaagacggagaaagagtacctgacatacctcggtgggtttcggcagctagctcccaaggacgtggtgctgaacaatctagctctgtcagacgtgaacttgcaggacttgatagccagtgccgatgaggtgacgtcggaggagaagaaagacgacaagggacaggtttactatgtgtatgagatcaatggggttgctgcacatagtttgatttcggtcacttgtgctaacaacaagctttatgctcattttgtcaatgcgcctacccccgagtggaaccgcgacaatgatatgttgaagcatgttcatgagtctttcaaaactgttggatccttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PsbP

Protein Analysis

241

Amino Acids

26.24

Weight (kDa)

5.96

Isoelectric Point (pI)

33.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005710)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63540
fragaria_vesca	FvH4_7g00900
malus_domestica	MD02G1313800.v1.1 MD07G1008600.v1.1
prunus_persica	Prupe.2G012000_v2.0.a1
pyrus_communis	pycom02g26310 pycom07g00740
rosa_chinensis	RchiOBHm_Chr1g0315791 RchiOBHm_Chr3g0473601
rosa_laevigata	RLG00000024001 RLG00000030732
rosa_multiflora	Rmu_co8131984.1_g000001 Rmu_sc0003069.1_g000013 Rmu_sc0009816.1_g000005 Rmu_sc0033628.1_g000002 Rmu_ssc0000154.1_g000002
rosa_roxburghii	Rroxscaffold_6G00408030
rosa_rugosa	Rorug01G0005600 Rorug03G0133200
rosa_samantha	Rh1AG016500 Rh1BG008900 Rh1CG013800 Rh3AG184900 Rh3BG212900 Rh3CG209400 Rh3DG208700
rosa_wichuraiana	Rw1G000970 Rw3G015960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	306, 524
AccB1I	GGYRCC	1 cut(s)	224
AccII	CGCG	2 cut(s)	239, 669
AclWI	GGATC	2 cut(s)	711, 724
AcoI	YGGCCR	2 cut(s)	3, 240
AcsI	RAATTY	2 cut(s)	213, 371
AcyI	GRCGYC	2 cut(s)	303, 521
AfaI	GTAC	2 cut(s)	352, 407
AfiI	CCNNNNNNNGG	1 cut(s)	660
AgsI	TTSAA	2 cut(s)	685, 706
AjiI	CACGTC	2 cut(s)	451, 481
AluBI	AGCT	5 cut(s)	158, 436, 440, 470, 625
AluI	AGCT	5 cut(s)	158, 436, 440, 470, 625
AlwI	GGATC	2 cut(s)	711, 724
Ama87I	CYCGRG	1 cut(s)	656
AoxI	GGCC	2 cut(s)	3, 240
ApeKI	GCWGC	5 cut(s)	121, 155, 158, 433, 584
ApoI	RAATTY	2 cut(s)	213, 371
AspLEI	GCGC	2 cut(s)	239, 649
AsuHPI	GGTGA	1 cut(s)	529
AsuNHI	GCTAGC	1 cut(s)	436
AvaI	CYCGRG	1 cut(s)	656
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	716
BanI	GGYRCC	1 cut(s)	224
BbsI	GAAGAC	2 cut(s)	284, 398
BbvI	GCAGC	5 cut(s)	133, 145, 167, 445, 571
BccI	CCATC	3 cut(s)	56, 61, 173
BceAI	ACGGC	2 cut(s)	238, 265
BciVI	GTATCC	1 cut(s)	248
BfaI	CTAG	2 cut(s)	437, 467
BfuI	GTATCC	1 cut(s)	248
BglI	GCCNNNNNGGC	1 cut(s)	239
BisI	GCNGC	9 cut(s)	122, 153, 156, 159, 162, 231, 240, 434, 585
BlsI	GCNGC	9 cut(s)	123, 154, 157, 160, 163, 232, 241, 435, 586
BmeT110I	CYCGRG	1 cut(s)	656
BmgBI	CACGTC	2 cut(s)	451, 481
BmiI	GGNNCC	3 cut(s)	226, 665, 718
BmtI	GCTAGC	1 cut(s)	440
BpiI	GAAGAC	2 cut(s)	284, 398
BsaHI	GRCGYC	2 cut(s)	303, 521
BsaJI	CCNNGG	2 cut(s)	418, 444
BsaXI	ACNNNNNCTCC	4 cut(s)	163, 193, 389, 419
Bsc4I	CCNNNNNNNGG	1 cut(s)	660
Bse1I	ACTGG	1 cut(s)	504
BseDI	CCNNGG	2 cut(s)	418, 444
BseGI	GGATG	2 cut(s)	48, 165
BseLI	CCNNNNNNNGG	1 cut(s)	660
BseNI	ACTGG	1 cut(s)	504
BseRI	GAGGAG	1 cut(s)	542
BseXI	GCAGC	5 cut(s)	133, 145, 167, 445, 571
BsgI	GTGCAG	1 cut(s)	570
Bsh1236I	CGCG	2 cut(s)	239, 669
BshFI	GGCC	2 cut(s)	5, 242
BshNI	GGYRCC	1 cut(s)	224
BsiHKCI	CYCGRG	1 cut(s)	656
BslFI	GGGAC	2 cut(s)	290, 561
BslI	CCNNNNNNNGG	1 cut(s)	660
BsmFI	GGGAC	2 cut(s)	290, 561
BsnI	GGCC	2 cut(s)	5, 242
BsoBI	CYCGRG	1 cut(s)	656
Bsp143I	GATC	2 cut(s)	570, 716
BspANI	GGCC	2 cut(s)	5, 242
BspFNI	CGCG	2 cut(s)	239, 669
BspHI	TCATGA	1 cut(s)	694
BspLI	GGNNCC	3 cut(s)	226, 665, 718
BspOI	GCTAGC	1 cut(s)	440
BspPI	GGATC	2 cut(s)	711, 724
BspT107I	GGYRCC	1 cut(s)	224
BsrI	ACTGG	1 cut(s)	504
BssECI	CCNNGG	2 cut(s)	418, 444
BssMI	GATC	2 cut(s)	570, 716
BssNI	GRCGYC	2 cut(s)	303, 521
BssT1I	CCWWGG	1 cut(s)	444
Bst4CI	ACNGT	5 cut(s)	84, 260, 314, 368, 712
BstACI	GRCGYC	2 cut(s)	303, 521
BstC8I	GCNNGC	2 cut(s)	235, 438
BstF5I	GGATG	2 cut(s)	48, 165
BstFNI	CGCG	2 cut(s)	239, 669
BstHHI	GCGC	2 cut(s)	239, 649
BstKTI	GATC	2 cut(s)	573, 719
BstMBI	GATC	2 cut(s)	570, 716
BstMWI	GCNNNNNNNGC	5 cut(s)	152, 158, 161, 236, 239
BstNSI	RCATGY	1 cut(s)	692
BstUI	CGCG	2 cut(s)	239, 669
BstV1I	GCAGC	5 cut(s)	133, 145, 167, 445, 571
BstV2I	GAAGAC	2 cut(s)	284, 398
BstX2I	RGATCY	1 cut(s)	716
BstXI	CCANNNNNNTGG	2 cut(s)	315, 451
BstYI	RGATCY	1 cut(s)	716
BsuI	GTATCC	1 cut(s)	248
BsuRI	GGCC	2 cut(s)	5, 242
BtrI	CACGTC	2 cut(s)	451, 481
BtsCI	GGATG	2 cut(s)	48, 165
BtsIMutI	CAGTG	2 cut(s)	373, 511
Cac8I	GCNNGC	2 cut(s)	235, 438
CciI	TCATGA	1 cut(s)	694
CfoI	GCGC	2 cut(s)	239, 649
Csp6I	GTAC	2 cut(s)	351, 406
CviAII	CATG	3 cut(s)	10, 689, 695
CviJI	RGCY	9 cut(s)	5, 124, 158, 242, 436, 440, 470, 503, 625
CviKI_1	RGCY	9 cut(s)	5, 124, 158, 242, 436, 440, 470, 503, 625
CviQI	GTAC	2 cut(s)	351, 406
DpnI	GATC	2 cut(s)	572, 718
DpnII	GATC	2 cut(s)	570, 716
EaeI	YGGCCR	2 cut(s)	3, 240
EciI	GGCGGA	2 cut(s)	267, 274
Eco130I	CCWWGG	1 cut(s)	444
Eco88I	CYCGRG	1 cut(s)	656
EcoRI	GAATTC	1 cut(s)	371
EcoT14I	CCWWGG	1 cut(s)	444
ErhI	CCWWGG	1 cut(s)	444
FaeI	CATG	3 cut(s)	13, 692, 698
FaqI	GGGAC	2 cut(s)	290, 561
FatI	CATG	3 cut(s)	9, 688, 694
Fnu4HI	GCNGC	9 cut(s)	122, 153, 156, 159, 162, 231, 240, 434, 585
FokI	GGATG	2 cut(s)	35, 152
Fsp4HI	GCNGC	9 cut(s)	122, 153, 156, 159, 162, 231, 240, 434, 585
FspBI	CTAG	2 cut(s)	437, 467
GlaI	GCGC	2 cut(s)	238, 648
GluI	GCNGC	9 cut(s)	122, 153, 156, 159, 162, 231, 240, 434, 585
HaeIII	GGCC	2 cut(s)	5, 242
HhaI	GCGC	2 cut(s)	239, 649
Hin1I	GRCGYC	2 cut(s)	303, 521
Hin1II	CATG	3 cut(s)	13, 692, 698
Hin6I	GCGC	2 cut(s)	237, 647
HinP1I	GCGC	2 cut(s)	237, 647
HindIII	AAGCTT	1 cut(s)	623
HinfI	GANTC	2 cut(s)	197, 698
HphI	GGTGA	1 cut(s)	529
Hpy166II	GTNNAC	2 cut(s)	484, 556
Hpy188I	TCNGA	3 cut(s)	271, 478, 526
Hpy188III	TCNNGA	2 cut(s)	87, 695
Hpy8I	GTNNAC	2 cut(s)	484, 556
Hpy99I	CGWCG	1 cut(s)	526
HpyCH4III	ACNGT	5 cut(s)	84, 260, 314, 368, 712
HpyCH4IV	ACGT	4 cut(s)	303, 450, 480, 521
HpyCH4V	TGCA	2 cut(s)	490, 587
HpyF10VI	GCNNNNNNNGC	5 cut(s)	152, 158, 161, 236, 239
HpySE526I	ACGT	4 cut(s)	303, 450, 480, 521
Hsp92I	GRCGYC	2 cut(s)	303, 521
Hsp92II	CATG	3 cut(s)	13, 692, 698
HspAI	GCGC	2 cut(s)	237, 647
Kzo9I	GATC	2 cut(s)	570, 716
LmnI	GCTCC	1 cut(s)	445
LpnPI	CCDG	7 cut(s)	100, 247, 321, 422, 476, 517, 536
Lsp1109I	GCAGC	5 cut(s)	133, 145, 167, 445, 571
MaeI	CTAG	2 cut(s)	437, 467
MaeII	ACGT	4 cut(s)	303, 450, 480, 521
MaeIII	GTNAC	2 cut(s)	517, 604
MalI	GATC	2 cut(s)	572, 718
MboI	GATC	2 cut(s)	570, 716
MboII	GAAGA	5 cut(s)	289, 397, 400, 403, 544
MflI	RGATCY	1 cut(s)	716
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	213, 371
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	191, 707
MmeI	TCCRAC	4 cut(s)	294, 296, 504, 694
MnlI	CCTC	7 cut(s)	78, 110, 124, 196, 428, 508, 520
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	131, 140
MslI	CAYNNNNRTG	1 cut(s)	693
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	158
MvnI	CGCG	2 cut(s)	239, 669
MwoI	GCNNNNNNNGC	5 cut(s)	152, 158, 161, 236, 239
NdeII	GATC	2 cut(s)	570, 716
NheI	GCTAGC	1 cut(s)	436
NlaIII	CATG	3 cut(s)	13, 692, 698
NlaIV	GGNNCC	3 cut(s)	226, 665, 718
NmeAIII	GCCGAG	1 cut(s)	313
NmuCI	GTSAC	2 cut(s)	517, 604
NspI	RCATGY	1 cut(s)	692
PagI	TCATGA	1 cut(s)	694
PkrI	GCNGC	9 cut(s)	123, 154, 157, 160, 163, 232, 241, 435, 586
PleI	GAGTC	2 cut(s)	191, 706
PpsI	GAGTC	2 cut(s)	191, 706
PspN4I	GGNNCC	3 cut(s)	226, 665, 718
PsuI	RGATCY	1 cut(s)	716
PvuII	CAGCTG	1 cut(s)	158
RsaI	GTAC	2 cut(s)	352, 407
RsaNI	GTAC	2 cut(s)	351, 406
RseI	CAYNNNNRTG	1 cut(s)	693
SaqAI	TTAA	2 cut(s)	131, 140
SatI	GCNGC	9 cut(s)	122, 153, 156, 159, 162, 231, 240, 434, 585
Sau3AI	GATC	2 cut(s)	570, 716
SchI	GAGTC	2 cut(s)	191, 707
SmiMI	CAYNNNNRTG	1 cut(s)	693
Sse9I	AATT	2 cut(s)	213, 371
SspMI	CTAG	2 cut(s)	437, 467
StyI	CCWWGG	1 cut(s)	444
TaaI	ACNGT	5 cut(s)	84, 260, 314, 368, 712
TaiI	ACGT	4 cut(s)	306, 453, 483, 524
TaqI	TCGA	1 cut(s)	342
TaqII	GACCGA	1 cut(s)	592
TasI	AATT	2 cut(s)	213, 371
TauI	GCSGC	4 cut(s)	155, 164, 233, 242
Tru1I	TTAA	2 cut(s)	131, 140
Tru9I	TTAA	2 cut(s)	131, 140
TscAI	CASTG	2 cut(s)	373, 511
TseFI	GTSAC	2 cut(s)	517, 604
TseI	GCWGC	5 cut(s)	121, 155, 158, 433, 584
Tsp45I	GTSAC	2 cut(s)	517, 604
TspDTI	ATGAA	1 cut(s)	683
TspGWI	ACGGA	1 cut(s)	410
TspRI	CASTG	2 cut(s)	373, 511
XapI	RAATTY	2 cut(s)	213, 371
XceI	RCATGY	1 cut(s)	692
XspI	CTAG	2 cut(s)	437, 467
ZraI	GACGTC	2 cut(s)	304, 522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.