Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0005710

Physical Location & Seq

Genomic Coordinates Reverse (-)

30545353 .. 30546281

Gene Structure 929 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00408030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGTTCTCCACCACCAACACCAACACCCCAAACACCACCATCCCATCTCCCAAACCACCTCAGACTCCACCACCGTCCAGAACAACCCACCTCCCCATTCCACCCTCCAAGCCACTCCTAACTACCTTAACCGCCACCGCCGCAGCTGCCGCCATTCTAACTGCCACTCCACCCTCATTAGCAGCAGACTCCCCAACTTACCAAATTTACTACGGCACCGCCGCCAGCGCGGCCAACTACGGCGGATACGGTGGCAACTCCGACAAGAAGACTTCCGCCGAGTATGTCTATGACGTCCCAGACGGTTGGAAAGAGCGTTTAGTATCAAAGGTCGAAAAAGGTACAAATGGAACTGACAGTGAATTTTACAACCCGAAGAAGAAGACGGAGAAAGAGTACCTGACATACCTCGGTGGGTTTCGGCAGCTAGCTCCCAAGGACGTGGTGCTGAACAATCTAGCTCTGTCAGACGTGAACTTGCAGGACTTGATAGCCAGTGCCGATGAGGTGACGTCGGAGGAGAAGAAAGACGACAAGGGACAGGTTTACTATGTGTATGAGATTAATGGGGTTGCCGCACATAGTTTGATTTCGGTCACTTGTGCTAACAACAAGCTTTACGCTCATTTTGTCAATGCGCCTACCCCCGAGTGGAACCGCGACAATGATATGTTGAAGCATGTTCATGAGTCTTTCAAAACTGTTGGATCCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PsbP

Protein Analysis

238

Amino Acids

25.88

Weight (kDa)

5.96

Isoelectric Point (pI)

28.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PsbP	PF01789	93 - 233	6.8e-08	PsbP

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005710)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63540
fragaria_vesca	FvH4_7g00900
malus_domestica	MD02G1313800.v1.1 MD07G1008600.v1.1
prunus_persica	Prupe.2G012000_v2.0.a1
pyrus_communis	pycom02g26310 pycom07g00740
rosa_chinensis	RchiOBHm_Chr1g0315791 RchiOBHm_Chr3g0473601
rosa_laevigata	RLG00000024001 RLG00000030732
rosa_multiflora	Rmu_co8131984.1_g000001 Rmu_sc0003069.1_g000013 Rmu_sc0009816.1_g000005 Rmu_sc0033628.1_g000002 Rmu_ssc0000154.1_g000002
rosa_roxburghii	Rroxscaffold_6G00408030
rosa_rugosa	Rorug01G0005600 Rorug03G0133200
rosa_samantha	Rh1AG016500 Rh1BG008900 Rh1CG013800 Rh3AG184900 Rh3BG212900 Rh3CG209400 Rh3DG208700
rosa_wichuraiana	Rw1G000970 Rw3G015960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	297, 515
AccB1I	GGYRCC	1 cut(s)	215
AccII	CGCG	2 cut(s)	230, 660
AclWI	GGATC	2 cut(s)	702, 715
AcoI	YGGCCR	1 cut(s)	231
AcsI	RAATTY	2 cut(s)	204, 362
AcyI	GRCGYC	2 cut(s)	294, 512
AfaI	GTAC	2 cut(s)	343, 398
AfiI	CCNNNNNNNGG	1 cut(s)	651
AgsI	TTSAA	2 cut(s)	676, 697
AjiI	CACGTC	2 cut(s)	442, 472
AluBI	AGCT	5 cut(s)	146, 427, 431, 461, 616
AluI	AGCT	5 cut(s)	146, 427, 431, 461, 616
AlwI	GGATC	2 cut(s)	702, 715
Ama87I	CYCGRG	1 cut(s)	647
AoxI	GGCC	1 cut(s)	231
ApeKI	GCWGC	4 cut(s)	143, 146, 182, 424
ApoI	RAATTY	2 cut(s)	204, 362
AseI	ATTAAT	1 cut(s)	564
AspLEI	GCGC	2 cut(s)	230, 640
AsuHPI	GGTGA	1 cut(s)	520
AsuNHI	GCTAGC	1 cut(s)	427
AvaI	CYCGRG	1 cut(s)	647
BamHI	GGATCC	1 cut(s)	707
BanI	GGYRCC	1 cut(s)	215
BbsI	GAAGAC	2 cut(s)	275, 389
BbvI	GCAGC	4 cut(s)	133, 155, 194, 436
BccI	CCATC	2 cut(s)	47, 52
BceAI	ACGGC	2 cut(s)	229, 256
BciVI	GTATCC	1 cut(s)	239
BfaI	CTAG	2 cut(s)	428, 458
BfuI	GTATCC	1 cut(s)	239
BglI	GCCNNNNNGGC	1 cut(s)	230
BisI	GCNGC	9 cut(s)	141, 144, 147, 150, 183, 222, 231, 425, 576
BlsI	GCNGC	9 cut(s)	142, 145, 148, 151, 184, 223, 232, 426, 577
BmeT110I	CYCGRG	1 cut(s)	647
BmgBI	CACGTC	2 cut(s)	442, 472
BmiI	GGNNCC	3 cut(s)	217, 656, 709
BmtI	GCTAGC	1 cut(s)	431
BpiI	GAAGAC	2 cut(s)	275, 389
BsaHI	GRCGYC	2 cut(s)	294, 512
BsaJI	CCNNGG	2 cut(s)	409, 435
BsaXI	ACNNNNNCTCC	4 cut(s)	151, 181, 380, 410
Bsc4I	CCNNNNNNNGG	1 cut(s)	651
Bse1I	ACTGG	1 cut(s)	495
BseDI	CCNNGG	2 cut(s)	409, 435
BseGI	GGATG	1 cut(s)	39
BseLI	CCNNNNNNNGG	1 cut(s)	651
BseMII	CTCAG	1 cut(s)	74
BseNI	ACTGG	1 cut(s)	495
BseRI	GAGGAG	1 cut(s)	533
BseXI	GCAGC	4 cut(s)	133, 155, 194, 436
Bsh1236I	CGCG	2 cut(s)	230, 660
BshFI	GGCC	1 cut(s)	233
BshNI	GGYRCC	1 cut(s)	215
BsiHKCI	CYCGRG	1 cut(s)	647
BslFI	GGGAC	2 cut(s)	281, 552
BslI	CCNNNNNNNGG	1 cut(s)	651
BsmFI	GGGAC	2 cut(s)	281, 552
BsnI	GGCC	1 cut(s)	233
BsoBI	CYCGRG	1 cut(s)	647
Bsp143I	GATC	1 cut(s)	707
BspANI	GGCC	1 cut(s)	233
BspCNI	CTCAG	1 cut(s)	73
BspFNI	CGCG	2 cut(s)	230, 660
BspHI	TCATGA	1 cut(s)	685
BspLI	GGNNCC	3 cut(s)	217, 656, 709
BspOI	GCTAGC	1 cut(s)	431
BspPI	GGATC	2 cut(s)	702, 715
BspT107I	GGYRCC	1 cut(s)	215
BsrI	ACTGG	1 cut(s)	495
BssECI	CCNNGG	2 cut(s)	409, 435
BssMI	GATC	1 cut(s)	707
BssNI	GRCGYC	2 cut(s)	294, 512
BssT1I	CCWWGG	1 cut(s)	435
Bst4CI	ACNGT	5 cut(s)	75, 251, 305, 359, 703
BstACI	GRCGYC	2 cut(s)	294, 512
BstC8I	GCNNGC	2 cut(s)	226, 429
BstDEI	CTNAG	1 cut(s)	60
BstF5I	GGATG	1 cut(s)	39
BstFNI	CGCG	2 cut(s)	230, 660
BstHHI	GCGC	2 cut(s)	230, 640
BstKTI	GATC	1 cut(s)	710
BstMBI	GATC	1 cut(s)	707
BstMWI	GCNNNNNNNGC	5 cut(s)	140, 146, 149, 227, 230
BstNSI	RCATGY	1 cut(s)	683
BstUI	CGCG	2 cut(s)	230, 660
BstV1I	GCAGC	4 cut(s)	133, 155, 194, 436
BstV2I	GAAGAC	2 cut(s)	275, 389
BstX2I	RGATCY	1 cut(s)	707
BstXI	CCANNNNNNTGG	2 cut(s)	306, 442
BstYI	RGATCY	1 cut(s)	707
BsuI	GTATCC	1 cut(s)	239
BsuRI	GGCC	1 cut(s)	233
BtrI	CACGTC	2 cut(s)	442, 472
BtsCI	GGATG	1 cut(s)	39
BtsIMutI	CAGTG	2 cut(s)	364, 502
Cac8I	GCNNGC	2 cut(s)	226, 429
CciI	TCATGA	1 cut(s)	685
CfoI	GCGC	2 cut(s)	230, 640
Csp6I	GTAC	2 cut(s)	342, 397
CviAII	CATG	2 cut(s)	680, 686
CviJI	RGCY	8 cut(s)	112, 146, 233, 427, 431, 461, 494, 616
CviKI_1	RGCY	8 cut(s)	112, 146, 233, 427, 431, 461, 494, 616
CviQI	GTAC	2 cut(s)	342, 397
DdeI	CTNAG	1 cut(s)	60
DpnI	GATC	1 cut(s)	709
DpnII	GATC	1 cut(s)	707
EaeI	YGGCCR	1 cut(s)	231
EciI	GGCGGA	2 cut(s)	258, 265
Eco130I	CCWWGG	1 cut(s)	435
Eco88I	CYCGRG	1 cut(s)	647
EcoT14I	CCWWGG	1 cut(s)	435
ErhI	CCWWGG	1 cut(s)	435
FaeI	CATG	2 cut(s)	683, 689
FaiI	YATR	9 cut(s)	285, 291, 406, 552, 558, 582, 671, 681, 687
FaqI	GGGAC	2 cut(s)	281, 552
FatI	CATG	2 cut(s)	679, 685
Fnu4HI	GCNGC	9 cut(s)	141, 144, 147, 150, 183, 222, 231, 425, 576
FokI	GGATG	1 cut(s)	26
Fsp4HI	GCNGC	9 cut(s)	141, 144, 147, 150, 183, 222, 231, 425, 576
FspBI	CTAG	2 cut(s)	428, 458
GlaI	GCGC	2 cut(s)	229, 639
GluI	GCNGC	9 cut(s)	141, 144, 147, 150, 183, 222, 231, 425, 576
HaeIII	GGCC	1 cut(s)	233
HhaI	GCGC	2 cut(s)	230, 640
Hin1I	GRCGYC	2 cut(s)	294, 512
Hin1II	CATG	2 cut(s)	683, 689
Hin6I	GCGC	2 cut(s)	228, 638
HinP1I	GCGC	2 cut(s)	228, 638
HindIII	AAGCTT	1 cut(s)	614
HinfI	GANTC	3 cut(s)	64, 188, 689
HphI	GGTGA	1 cut(s)	520
Hpy166II	GTNNAC	2 cut(s)	475, 547
Hpy188I	TCNGA	4 cut(s)	63, 262, 469, 517
Hpy188III	TCNNGA	2 cut(s)	78, 686
Hpy8I	GTNNAC	2 cut(s)	475, 547
Hpy99I	CGWCG	1 cut(s)	517
HpyCH4III	ACNGT	5 cut(s)	75, 251, 305, 359, 703
HpyCH4IV	ACGT	4 cut(s)	294, 441, 471, 512
HpyCH4V	TGCA	1 cut(s)	481
HpyF10VI	GCNNNNNNNGC	5 cut(s)	140, 146, 149, 227, 230
HpyF3I	CTNAG	1 cut(s)	60
HpySE526I	ACGT	4 cut(s)	294, 441, 471, 512
Hsp92I	GRCGYC	2 cut(s)	294, 512
Hsp92II	CATG	2 cut(s)	683, 689
HspAI	GCGC	2 cut(s)	228, 638
Kzo9I	GATC	1 cut(s)	707
LmnI	GCTCC	1 cut(s)	436
LpnPI	CCDG	7 cut(s)	91, 238, 312, 413, 467, 508, 527
Lsp1109I	GCAGC	4 cut(s)	133, 155, 194, 436
MaeI	CTAG	2 cut(s)	428, 458
MaeII	ACGT	4 cut(s)	294, 441, 471, 512
MaeIII	GTNAC	2 cut(s)	508, 595
MalI	GATC	1 cut(s)	709
MboI	GATC	1 cut(s)	707
MboII	GAAGA	5 cut(s)	280, 388, 391, 394, 535
MflI	RGATCY	1 cut(s)	707
MluCI	AATT	2 cut(s)	204, 362
MlyI	GAGTC	3 cut(s)	58, 182, 698
MmeI	TCCRAC	4 cut(s)	285, 287, 495, 685
MnlI	CCTC	7 cut(s)	69, 101, 115, 184, 419, 499, 511
MseI	TTAA	2 cut(s)	128, 564
MslI	CAYNNNNRTG	1 cut(s)	684
MspA1I	CMGCKG	1 cut(s)	146
MvnI	CGCG	2 cut(s)	230, 660
MwoI	GCNNNNNNNGC	5 cut(s)	140, 146, 149, 227, 230
NdeII	GATC	1 cut(s)	707
NheI	GCTAGC	1 cut(s)	427
NlaIII	CATG	2 cut(s)	683, 689
NlaIV	GGNNCC	3 cut(s)	217, 656, 709
NmeAIII	GCCGAG	1 cut(s)	304
NmuCI	GTSAC	2 cut(s)	508, 595
NspI	RCATGY	1 cut(s)	683
PagI	TCATGA	1 cut(s)	685
PkrI	GCNGC	9 cut(s)	142, 145, 148, 151, 184, 223, 232, 426, 577
PleI	GAGTC	3 cut(s)	58, 182, 697
PpsI	GAGTC	3 cut(s)	58, 182, 697
PshBI	ATTAAT	1 cut(s)	564
PspN4I	GGNNCC	3 cut(s)	217, 656, 709
PsuI	RGATCY	1 cut(s)	707
PvuII	CAGCTG	1 cut(s)	146
RsaI	GTAC	2 cut(s)	343, 398
RsaNI	GTAC	2 cut(s)	342, 397
RseI	CAYNNNNRTG	1 cut(s)	684
SaqAI	TTAA	2 cut(s)	128, 564
SatI	GCNGC	9 cut(s)	141, 144, 147, 150, 183, 222, 231, 425, 576
Sau3AI	GATC	1 cut(s)	707
SchI	GAGTC	3 cut(s)	58, 182, 698
SmiMI	CAYNNNNRTG	1 cut(s)	684
Sse9I	AATT	2 cut(s)	204, 362
SspMI	CTAG	2 cut(s)	428, 458
StyI	CCWWGG	1 cut(s)	435
TaaI	ACNGT	5 cut(s)	75, 251, 305, 359, 703
TaiI	ACGT	4 cut(s)	297, 444, 474, 515
TaqI	TCGA	1 cut(s)	333
TaqII	GACCGA	1 cut(s)	583
TasI	AATT	2 cut(s)	204, 362
TauI	GCSGC	5 cut(s)	143, 152, 224, 233, 578
Tru1I	TTAA	2 cut(s)	128, 564
Tru9I	TTAA	2 cut(s)	128, 564
TscAI	CASTG	2 cut(s)	364, 502
TseFI	GTSAC	2 cut(s)	508, 595
TseI	GCWGC	4 cut(s)	143, 146, 182, 424
Tsp45I	GTSAC	2 cut(s)	508, 595
TspDTI	ATGAA	1 cut(s)	674
TspGWI	ACGGA	1 cut(s)	401
TspRI	CASTG	2 cut(s)	364, 502
VspI	ATTAAT	1 cut(s)	564
XapI	RAATTY	2 cut(s)	204, 362
XceI	RCATGY	1 cut(s)	683
XspI	CTAG	2 cut(s)	428, 458
ZraI	GACGTC	2 cut(s)	295, 513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.