RLG00000030732

Thylakoid lumenal 19 kDa protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0005710
Physical Location & Seq
Reverse (-)
66620086 .. 66620885
800 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030732

Sequence Viewer

Length: 684 bp
ATGGCTACCATGTTCTCCACCACCAACACCAACACCCCAAACACCACCATCCCATCTGCCAAACCACCTCAAACTCCACCACCGTCCAGAACCGACCTCCCCATTCCACCCTCCAAGCCATTCCTAACTACCTTAACAGCCACCACTACAGCTGCCACCATTCTAACTGCCACTCCACCCTCATTAGTAGACTCCCCAACTTACCAAATTTACTACGGCACCGCCGCCAACATCTCCAACTATGGCGGATACGATAGCAACTCCGACAAGAAGACTTCGGCCGAGTATGTCTATGACGTCCCAGACGGTACAAATGGAACTGACAGTGAATTCTACAATCCAAAGAAGAAGACAGAGAAAGAGTACCTGTCTTACCTCGGTGGGTTTCGGCAGCTAGCTACGAAGGACGTGGTGCTGAACAATCTAGCTCTGTCAGATGTGAACTTGCAGGACTTGATAGCTAGTGTTGATGCCGTGACGTCGGATGAGAAGAAAGACGAGAAGGGACAGATTTACTATGTATATGAGAACAATGGGGTTGCAGCACATAGTTTGATTTCGGTGACTTGTGCTAACAACAAGCTTTATGCTCATTTAGTCAATGCACCTACTCCCGAGTGGAACCGCGGCAATGAAATGTTGAAGCATGTTCATGAGTCTTTCAAAACTATTGGATCCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PsbP

Protein Analysis

228

Amino Acids

24.76

Weight (kDa)

5.34

Isoelectric Point (pI)

29.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbP PF01789 157 - 222 4.3e-06 PsbP
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 300, 482
AccB1I GGYRCC 1 cut(s) 218
AccI GTMKAC 1 cut(s) 189
AccII CGCG 1 cut(s) 627
AciI CCGC 5 cut(s) 222, 225, 246, 625, 627
AclWI GGATC 2 cut(s) 669, 682
AcoI YGGCCR 1 cut(s) 279
AcsI RAATTY 2 cut(s) 207, 329
AcyI GRCGYC 2 cut(s) 297, 479
AfaI GTAC 2 cut(s) 310, 365
AgsI TTSAA 2 cut(s) 643, 664
AjiI CACGTC 1 cut(s) 409
AluBI AGCT 6 cut(s) 152, 394, 398, 428, 461, 583
AluI AGCT 6 cut(s) 152, 394, 398, 428, 461, 583
AlwI GGATC 2 cut(s) 669, 682
Ama87I CYCGRG 1 cut(s) 614
AoxI GGCC 1 cut(s) 279
ApeKI GCWGC 3 cut(s) 152, 391, 542
ApoI RAATTY 2 cut(s) 207, 329
AsuHPI GGTGA 1 cut(s) 574
AsuNHI GCTAGC 1 cut(s) 394
AvaI CYCGRG 1 cut(s) 614
BamHI GGATCC 1 cut(s) 674
BanI GGYRCC 1 cut(s) 218
BbsI GAAGAC 2 cut(s) 278, 356
BbvI GCAGC 3 cut(s) 139, 403, 554
BccI CCATC 2 cut(s) 56, 61
BceAI ACGGC 2 cut(s) 232, 458
BciVI GTATCC 1 cut(s) 242
BfaI CTAG 3 cut(s) 395, 425, 462
BfmI CTRYAG 1 cut(s) 147
BfuI GTATCC 1 cut(s) 242
BisI GCNGC 5 cut(s) 153, 225, 392, 543, 628
BlsI GCNGC 5 cut(s) 154, 226, 393, 544, 629
BmeT110I CYCGRG 1 cut(s) 614
BmgBI CACGTC 1 cut(s) 409
BmiI GGNNCC 3 cut(s) 220, 623, 676
BmsI GCATC 1 cut(s) 460
BmtI GCTAGC 1 cut(s) 398
BpiI GAAGAC 2 cut(s) 278, 356
BsaHI GRCGYC 2 cut(s) 297, 479
BsaJI CCNNGG 2 cut(s) 376, 625
BsaXI ACNNNNNCTCC 2 cut(s) 157, 187
Bse3DI GCAATG 1 cut(s) 637
BseDI CCNNGG 2 cut(s) 376, 625
BseGI GGATG 2 cut(s) 48, 490
BseMI GCAATG 1 cut(s) 637
BseX3I CGGCCG 1 cut(s) 279
BseXI GCAGC 3 cut(s) 139, 403, 554
Bsh1236I CGCG 1 cut(s) 627
Bsh1285I CGRYCG 1 cut(s) 282
BshFI GGCC 1 cut(s) 281
BshNI GGYRCC 1 cut(s) 218
BsiEI CGRYCG 1 cut(s) 282
BsiHKCI CYCGRG 1 cut(s) 614
BslFI GGGAC 2 cut(s) 284, 519
BsmFI GGGAC 2 cut(s) 284, 519
BsnI GGCC 1 cut(s) 281
BsoBI CYCGRG 1 cut(s) 614
Bsp143I GATC 1 cut(s) 674
BspACI CCGC 5 cut(s) 222, 225, 246, 625, 627
BspANI GGCC 1 cut(s) 281
BspFNI CGCG 1 cut(s) 627
BspHI TCATGA 1 cut(s) 652
BspLI GGNNCC 3 cut(s) 220, 623, 676
BspOI GCTAGC 1 cut(s) 398
BspPI GGATC 2 cut(s) 669, 682
BspT107I GGYRCC 1 cut(s) 218
BsrDI GCAATG 1 cut(s) 637
BssECI CCNNGG 2 cut(s) 376, 625
BssMI GATC 1 cut(s) 674
BssNI GRCGYC 2 cut(s) 297, 479
Bst4CI ACNGT 3 cut(s) 84, 308, 326
BstACI GRCGYC 2 cut(s) 297, 479
BstC8I GCNNGC 1 cut(s) 396
BstDSI CCRYGG 1 cut(s) 625
BstF5I GGATG 2 cut(s) 48, 490
BstFNI CGCG 1 cut(s) 627
BstKTI GATC 1 cut(s) 677
BstMBI GATC 1 cut(s) 674
BstMCI CGRYCG 1 cut(s) 282
BstNSI RCATGY 1 cut(s) 650
BstSFI CTRYAG 1 cut(s) 147
BstUI CGCG 1 cut(s) 627
BstV1I GCAGC 3 cut(s) 139, 403, 554
BstV2I GAAGAC 2 cut(s) 278, 356
BstX2I RGATCY 1 cut(s) 674
BstYI RGATCY 1 cut(s) 674
BstZI CGGCCG 1 cut(s) 279
BsuI GTATCC 1 cut(s) 242
BsuRI GGCC 1 cut(s) 281
BtgI CCRYGG 1 cut(s) 625
BtrI CACGTC 1 cut(s) 409
BtsCI GGATG 2 cut(s) 48, 490
BtsIMutI CAGTG 1 cut(s) 331
Cac8I GCNNGC 1 cut(s) 396
CciI TCATGA 1 cut(s) 652
Cfr42I CCGCGG 1 cut(s) 628
Csp6I GTAC 2 cut(s) 309, 364
CviAII CATG 3 cut(s) 10, 647, 653
CviQI GTAC 2 cut(s) 309, 364
DpnI GATC 1 cut(s) 676
DpnII GATC 1 cut(s) 674
EaeI YGGCCR 1 cut(s) 279
EagI CGGCCG 1 cut(s) 279
EciI GGCGGA 1 cut(s) 261
EclXI CGGCCG 1 cut(s) 279
Eco52I CGGCCG 1 cut(s) 279
Eco88I CYCGRG 1 cut(s) 614
EcoRI GAATTC 1 cut(s) 329
FaeI CATG 3 cut(s) 13, 650, 656
FaqI GGGAC 2 cut(s) 284, 519
FatI CATG 3 cut(s) 9, 646, 652
FblI GTMKAC 1 cut(s) 189
Fnu4HI GCNGC 5 cut(s) 153, 225, 392, 543, 628
FokI GGATG 2 cut(s) 35, 497
Fsp4HI GCNGC 5 cut(s) 153, 225, 392, 543, 628
FspBI CTAG 3 cut(s) 395, 425, 462
GluI GCNGC 5 cut(s) 153, 225, 392, 543, 628
HaeIII GGCC 1 cut(s) 281
Hin1I GRCGYC 2 cut(s) 297, 479
Hin1II CATG 3 cut(s) 13, 650, 656
HindIII AAGCTT 1 cut(s) 581
HinfI GANTC 2 cut(s) 191, 656
HphI GGTGA 1 cut(s) 574
Hpy166II GTNNAC 2 cut(s) 190, 442
Hpy188I TCNGA 3 cut(s) 265, 436, 484
Hpy188III TCNNGA 3 cut(s) 87, 614, 653
Hpy8I GTNNAC 2 cut(s) 190, 442
Hpy99I CGWCG 1 cut(s) 484
HpyAV CCTTC 2 cut(s) 397, 496
HpyCH4III ACNGT 3 cut(s) 84, 308, 326
HpyCH4IV ACGT 3 cut(s) 297, 408, 479
HpyCH4V TGCA 3 cut(s) 448, 542, 605
HpySE526I ACGT 3 cut(s) 297, 408, 479
Hsp92I GRCGYC 2 cut(s) 297, 479
Hsp92II CATG 3 cut(s) 13, 650, 656
KspI CCGCGG 1 cut(s) 628
Kzo9I GATC 1 cut(s) 674
LpnPI CCDG 4 cut(s) 100, 315, 380, 434
Lsp1109I GCAGC 3 cut(s) 139, 403, 554
LweI GCATC 1 cut(s) 460
MaeI CTAG 3 cut(s) 395, 425, 462
MaeII ACGT 3 cut(s) 297, 408, 479
MaeIII GTNAC 2 cut(s) 475, 562
MalI GATC 1 cut(s) 676
MboI GATC 1 cut(s) 674
MboII GAAGA 4 cut(s) 283, 358, 361, 502
MflI RGATCY 1 cut(s) 674
MluCI AATT 2 cut(s) 207, 329
MlyI GAGTC 2 cut(s) 185, 665
MmeI TCCRAC 3 cut(s) 261, 288, 462
MnlI CCTC 5 cut(s) 78, 107, 121, 190, 386
MseI TTAA 1 cut(s) 134
MslI CAYNNNNRTG 1 cut(s) 651
MspA1I CMGCKG 2 cut(s) 152, 627
MvnI CGCG 1 cut(s) 627
NdeII GATC 1 cut(s) 674
NheI GCTAGC 1 cut(s) 394
NlaIII CATG 3 cut(s) 13, 650, 656
NlaIV GGNNCC 3 cut(s) 220, 623, 676
NmeAIII GCCGAG 1 cut(s) 307
NmuCI GTSAC 2 cut(s) 475, 562
NspI RCATGY 1 cut(s) 650
PagI TCATGA 1 cut(s) 652
PkrI GCNGC 5 cut(s) 154, 226, 393, 544, 629
PleI GAGTC 2 cut(s) 185, 664
PpsI GAGTC 2 cut(s) 185, 664
PspN4I GGNNCC 3 cut(s) 220, 623, 676
PsuI RGATCY 1 cut(s) 674
PvuII CAGCTG 1 cut(s) 152
RsaI GTAC 2 cut(s) 310, 365
RsaNI GTAC 2 cut(s) 309, 364
RseI CAYNNNNRTG 1 cut(s) 651
SacII CCGCGG 1 cut(s) 628
SaqAI TTAA 1 cut(s) 134
SatI GCNGC 5 cut(s) 153, 225, 392, 543, 628
Sau3AI GATC 1 cut(s) 674
SchI GAGTC 2 cut(s) 185, 665
SfaNI GCATC 1 cut(s) 460
SfcI CTRYAG 1 cut(s) 147
Sfr303I CCGCGG 1 cut(s) 628
SgrBI CCGCGG 1 cut(s) 628
SmiMI CAYNNNNRTG 1 cut(s) 651
Sse9I AATT 2 cut(s) 207, 329
SsiI CCGC 5 cut(s) 222, 225, 246, 625, 627
SspMI CTAG 3 cut(s) 395, 425, 462
TaaI ACNGT 3 cut(s) 84, 308, 326
TaiI ACGT 3 cut(s) 300, 411, 482
TasI AATT 2 cut(s) 207, 329
TauI GCSGC 2 cut(s) 227, 630
Tru1I TTAA 1 cut(s) 134
Tru9I TTAA 1 cut(s) 134
TscAI CASTG 1 cut(s) 331
TseFI GTSAC 2 cut(s) 475, 562
TseI GCWGC 3 cut(s) 152, 391, 542
Tsp45I GTSAC 2 cut(s) 475, 562
TspDTI ATGAA 2 cut(s) 641, 648
TspRI CASTG 1 cut(s) 331
XapI RAATTY 2 cut(s) 207, 329
XceI RCATGY 1 cut(s) 650
XmiI GTMKAC 1 cut(s) 189
XspI CTAG 3 cut(s) 395, 425, 462
ZraI GACGTC 2 cut(s) 298, 480
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.