Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0005710

Physical Location & Seq

Genomic Coordinates Forward (+)

1361281 .. 1362488

Gene Structure 1208 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g00900.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGCTACCATGTTCTCCACCACCAATGTCACCAACACCCCAAACACCACCATCCCATCTCTCAAACCACCCCAAACTCCACCACCGTCAAGAACCCACCTCCCCATCCCACCCTCCAAGCCACTCCTAACTACCTTAACAGCCACCTTAACCGCCACTGCCGCAGCTGCCGCCATCCTAACTGCCACTCCGCCATCATTAGCAGACTCCCCAACTTACCAAATTTACTACGGCACCGCCGCCAGCGCCGCCAACTACGGCGGATACGGTGGAAACTCCGACAAGAAGGCTTCCGCCGAGTACGTGTATGACGTCCCTGACGGTTGGAAAGAGCGTTTAGTATCAAAAGTCGAAAAAGGTACAAATGGAACTGACAGTGAATTTTACAACCCGAAGAAGAAGACTGAGAAAGAGTACCTGACTTTTCTCGGTGGCTATCGGCAGCTAGCTCCCAGGGACGTAATTCTGAACAATCTAGCTCTGTCAGACGTGAACTTGCAGGACTTGATAGCTAGTGCCGATTCGGTGACGTCGGAGGAGAGGAAAGACGACAAGGGACAGGTTTACTATGTGTATGAGATCGATGGGGTTGCAGCACATAGTTTGATTTCGGTGACTTGTGCTAACAACAAGCTCTATGCTCATTTTGTGAATGCGCCTACCCCCGAGTGGAACCGCGACAATGATATGTTGAAGCATGTTCATGAGTCTTTCAAAACTGTTGGAAACTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PsbP

Protein Analysis

245

Amino Acids

26.56

Weight (kDa)

5.95

Isoelectric Point (pI)

27.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PsbP	PF01789	100 - 239	2.4e-07	PsbP

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005710)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63540
fragaria_vesca	FvH4_7g00900
malus_domestica	MD02G1313800.v1.1 MD07G1008600.v1.1
prunus_persica	Prupe.2G012000_v2.0.a1
pyrus_communis	pycom02g26310 pycom07g00740
rosa_chinensis	RchiOBHm_Chr1g0315791 RchiOBHm_Chr3g0473601
rosa_laevigata	RLG00000024001 RLG00000030732
rosa_multiflora	Rmu_co8131984.1_g000001 Rmu_sc0003069.1_g000013 Rmu_sc0009816.1_g000005 Rmu_sc0033628.1_g000002 Rmu_ssc0000154.1_g000002
rosa_roxburghii	Rroxscaffold_6G00408030
rosa_rugosa	Rorug01G0005600 Rorug03G0133200
rosa_samantha	Rh1AG016500 Rh1BG008900 Rh1CG013800 Rh3AG184900 Rh3BG212900 Rh3CG209400 Rh3DG208700
rosa_wichuraiana	Rw1G000970 Rw3G015960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	315, 533
AccB1I	GGYRCC	1 cut(s)	233
AccII	CGCG	1 cut(s)	678
AcsI	RAATTY	2 cut(s)	222, 380
AcyI	GRCGYC	2 cut(s)	312, 530
AfaI	GTAC	3 cut(s)	302, 361, 416
AfiI	CCNNNNNNNGG	1 cut(s)	669
AflIII	ACRYGT	1 cut(s)	303
AgsI	TTSAA	2 cut(s)	694, 715
AjiI	CACGTC	1 cut(s)	490
AjnI	CCWGG	1 cut(s)	452
AluBI	AGCT	6 cut(s)	167, 445, 449, 479, 512, 634
AluI	AGCT	6 cut(s)	167, 445, 449, 479, 512, 634
Ama87I	CYCGRG	1 cut(s)	665
ApeKI	GCWGC	4 cut(s)	164, 167, 442, 593
ApoI	RAATTY	2 cut(s)	222, 380
AspLEI	GCGC	2 cut(s)	248, 658
AsuHPI	GGTGA	3 cut(s)	22, 538, 625
AsuNHI	GCTAGC	1 cut(s)	445
AvaI	CYCGRG	1 cut(s)	665
BanI	GGYRCC	1 cut(s)	233
BbsI	GAAGAC	1 cut(s)	407
BbvI	GCAGC	4 cut(s)	154, 176, 454, 605
BccI	CCATC	6 cut(s)	59, 64, 113, 182, 202, 578
BceAI	ACGGC	2 cut(s)	247, 274
BcgI	CGANNNNNNTGC	2 cut(s)	572, 606
BciT130I	CCWGG	1 cut(s)	454
BciVI	GTATCC	1 cut(s)	257
BfaI	CTAG	3 cut(s)	446, 476, 513
BfoI	RGCGCY	1 cut(s)	249
BfuI	GTATCC	1 cut(s)	257
BisI	GCNGC	8 cut(s)	162, 165, 168, 171, 240, 249, 443, 594
BlsI	GCNGC	8 cut(s)	163, 166, 169, 172, 241, 250, 444, 595
Bme1390I	CCNGG	1 cut(s)	454
BmeT110I	CYCGRG	1 cut(s)	665
BmgBI	CACGTC	1 cut(s)	490
BmiI	GGNNCC	2 cut(s)	235, 674
BmrFI	CCNGG	1 cut(s)	454
BmtI	GCTAGC	1 cut(s)	449
BpiI	GAAGAC	1 cut(s)	407
Bsa29I	ATCGAT	1 cut(s)	582
BsaAI	YACGTR	1 cut(s)	304
BsaHI	GRCGYC	2 cut(s)	312, 530
BsaJI	CCNNGG	2 cut(s)	452, 453
BsaXI	ACNNNNNCTCC	2 cut(s)	172, 202
Bsc4I	CCNNNNNNNGG	1 cut(s)	669
BseBI	CCWGG	1 cut(s)	454
BseCI	ATCGAT	1 cut(s)	582
BseDI	CCNNGG	2 cut(s)	452, 453
BseGI	GGATG	3 cut(s)	51, 105, 174
BseLI	CCNNNNNNNGG	1 cut(s)	669
BseMII	CTCAG	1 cut(s)	396
BseRI	GAGGAG	1 cut(s)	551
BseXI	GCAGC	4 cut(s)	154, 176, 454, 605
Bsh1236I	CGCG	1 cut(s)	678
BshNI	GGYRCC	1 cut(s)	233
BshVI	ATCGAT	1 cut(s)	582
BsiHKCI	CYCGRG	1 cut(s)	665
BslFI	GGGAC	3 cut(s)	299, 470, 570
BslI	CCNNNNNNNGG	1 cut(s)	669
BsmFI	GGGAC	3 cut(s)	299, 470, 570
BsmI	GAATGC	1 cut(s)	658
BsoBI	CYCGRG	1 cut(s)	665
Bsp143I	GATC	1 cut(s)	579
BspCNI	CTCAG	1 cut(s)	397
BspDI	ATCGAT	1 cut(s)	582
BspFNI	CGCG	1 cut(s)	678
BspHI	TCATGA	1 cut(s)	703
BspLI	GGNNCC	2 cut(s)	235, 674
BspOI	GCTAGC	1 cut(s)	449
BspT107I	GGYRCC	1 cut(s)	233
BssECI	CCNNGG	2 cut(s)	452, 453
BssMI	GATC	1 cut(s)	579
BssNI	GRCGYC	2 cut(s)	312, 530
Bst2UI	CCWGG	1 cut(s)	454
Bst4CI	ACNGT	5 cut(s)	87, 269, 323, 377, 721
BstACI	GRCGYC	2 cut(s)	312, 530
BstBAI	YACGTR	1 cut(s)	304
BstC8I	GCNNGC	2 cut(s)	244, 447
BstDEI	CTNAG	1 cut(s)	405
BstF5I	GGATG	3 cut(s)	51, 105, 174
BstFNI	CGCG	1 cut(s)	678
BstH2I	RGCGCY	1 cut(s)	249
BstHHI	GCGC	2 cut(s)	248, 658
BstKTI	GATC	1 cut(s)	582
BstMBI	GATC	1 cut(s)	579
BstMWI	GCNNNNNNNGC	5 cut(s)	161, 167, 170, 245, 248
BstNI	CCWGG	1 cut(s)	454
BstNSI	RCATGY	1 cut(s)	701
BstSCI	CCNGG	1 cut(s)	452
BstUI	CGCG	1 cut(s)	678
BstV1I	GCAGC	4 cut(s)	154, 176, 454, 605
BstV2I	GAAGAC	1 cut(s)	407
Bsu15I	ATCGAT	1 cut(s)	582
BsuI	GTATCC	1 cut(s)	257
BsuTUI	ATCGAT	1 cut(s)	582
BtrI	CACGTC	1 cut(s)	490
BtsCI	GGATG	3 cut(s)	51, 105, 174
BtsI	GCAGTG	1 cut(s)	156
BtsIMutI	CAGTG	2 cut(s)	156, 382
Cac8I	GCNNGC	2 cut(s)	244, 447
CciI	TCATGA	1 cut(s)	703
CfoI	GCGC	2 cut(s)	248, 658
ClaI	ATCGAT	1 cut(s)	582
Csp6I	GTAC	3 cut(s)	301, 360, 415
CviAII	CATG	3 cut(s)	10, 698, 704
CviQI	GTAC	3 cut(s)	301, 360, 415
DdeI	CTNAG	1 cut(s)	405
DpnI	GATC	1 cut(s)	581
DpnII	GATC	1 cut(s)	579
EciI	GGCGGA	3 cut(s)	180, 276, 283
Eco88I	CYCGRG	1 cut(s)	665
EcoRII	CCWGG	1 cut(s)	452
FaeI	CATG	3 cut(s)	13, 701, 707
FaiI	YATR	9 cut(s)	11, 309, 570, 576, 600, 639, 689, 699, 705
FaqI	GGGAC	3 cut(s)	299, 470, 570
FatI	CATG	3 cut(s)	9, 697, 703
Fnu4HI	GCNGC	8 cut(s)	162, 165, 168, 171, 240, 249, 443, 594
FokI	GGATG	3 cut(s)	38, 92, 161
Fsp4HI	GCNGC	8 cut(s)	162, 165, 168, 171, 240, 249, 443, 594
FspBI	CTAG	3 cut(s)	446, 476, 513
GlaI	GCGC	2 cut(s)	247, 657
GluI	GCNGC	8 cut(s)	162, 165, 168, 171, 240, 249, 443, 594
HaeII	RGCGCY	1 cut(s)	249
HhaI	GCGC	2 cut(s)	248, 658
Hin1I	GRCGYC	2 cut(s)	312, 530
Hin1II	CATG	3 cut(s)	13, 701, 707
Hin6I	GCGC	2 cut(s)	246, 656
HinP1I	GCGC	2 cut(s)	246, 656
HinfI	GANTC	3 cut(s)	206, 521, 707
HphI	GGTGA	3 cut(s)	22, 538, 625
Hpy166II	GTNNAC	2 cut(s)	493, 565
Hpy188I	TCNGA	4 cut(s)	280, 468, 487, 535
Hpy188III	TCNNGA	2 cut(s)	90, 704
Hpy8I	GTNNAC	2 cut(s)	493, 565
Hpy99I	CGWCG	1 cut(s)	535
HpyAV	CCTTC	1 cut(s)	280
HpyCH4III	ACNGT	5 cut(s)	87, 269, 323, 377, 721
HpyCH4IV	ACGT	5 cut(s)	303, 312, 459, 489, 530
HpyCH4V	TGCA	2 cut(s)	499, 593
HpyF10VI	GCNNNNNNNGC	5 cut(s)	161, 167, 170, 245, 248
HpyF3I	CTNAG	1 cut(s)	405
HpySE526I	ACGT	5 cut(s)	303, 312, 459, 489, 530
Hsp92I	GRCGYC	2 cut(s)	312, 530
Hsp92II	CATG	3 cut(s)	13, 701, 707
HspAI	GCGC	2 cut(s)	246, 656
Kzo9I	GATC	1 cut(s)	579
LmnI	GCTCC	1 cut(s)	454
LpnPI	CCDG	7 cut(s)	256, 330, 431, 439, 466, 485, 545
Lsp1109I	GCAGC	4 cut(s)	154, 176, 454, 605
MaeI	CTAG	3 cut(s)	446, 476, 513
MaeII	ACGT	5 cut(s)	303, 312, 459, 489, 530
MaeIII	GTNAC	3 cut(s)	28, 526, 613
MalI	GATC	1 cut(s)	581
MboI	GATC	1 cut(s)	579
MboII	GAAGA	3 cut(s)	406, 409, 412
MluCI	AATT	3 cut(s)	222, 380, 462
MlyI	GAGTC	2 cut(s)	200, 716
MmeI	TCCRAC	4 cut(s)	303, 305, 513, 703
MnlI	CCTC	4 cut(s)	110, 124, 529, 534
MseI	TTAA	2 cut(s)	137, 149
MslI	CAYNNNNRTG	1 cut(s)	702
MspA1I	CMGCKG	1 cut(s)	167
MspR9I	CCNGG	1 cut(s)	454
Mva1269I	GAATGC	1 cut(s)	658
MvaI	CCWGG	1 cut(s)	454
MvnI	CGCG	1 cut(s)	678
MwoI	GCNNNNNNNGC	5 cut(s)	161, 167, 170, 245, 248
NdeII	GATC	1 cut(s)	579
NheI	GCTAGC	1 cut(s)	445
NlaIII	CATG	3 cut(s)	13, 701, 707
NlaIV	GGNNCC	2 cut(s)	235, 674
NmeAIII	GCCGAG	1 cut(s)	322
NmuCI	GTSAC	3 cut(s)	28, 526, 613
NspI	RCATGY	1 cut(s)	701
PagI	TCATGA	1 cut(s)	703
PasI	CCCWGGG	1 cut(s)	453
PcsI	WCGNNNNNNNCGW	1 cut(s)	309
PctI	GAATGC	1 cut(s)	658
PfeI	GAWTC	1 cut(s)	521
PkrI	GCNGC	8 cut(s)	163, 166, 169, 172, 241, 250, 444, 595
PleI	GAGTC	2 cut(s)	200, 715
PpsI	GAGTC	2 cut(s)	200, 715
Ppu21I	YACGTR	1 cut(s)	304
Psp6I	CCWGG	1 cut(s)	452
PspGI	CCWGG	1 cut(s)	452
PspN4I	GGNNCC	2 cut(s)	235, 674
PvuII	CAGCTG	1 cut(s)	167
RsaI	GTAC	3 cut(s)	302, 361, 416
RsaNI	GTAC	3 cut(s)	301, 360, 415
RseI	CAYNNNNRTG	1 cut(s)	702
SaqAI	TTAA	2 cut(s)	137, 149
SatI	GCNGC	8 cut(s)	162, 165, 168, 171, 240, 249, 443, 594
Sau3AI	GATC	1 cut(s)	579
SchI	GAGTC	2 cut(s)	200, 716
ScrFI	CCNGG	1 cut(s)	454
SmiMI	CAYNNNNRTG	1 cut(s)	702
Sse9I	AATT	3 cut(s)	222, 380, 462
SspMI	CTAG	3 cut(s)	446, 476, 513
StyD4I	CCNGG	1 cut(s)	452
TaaI	ACNGT	5 cut(s)	87, 269, 323, 377, 721
TaiI	ACGT	5 cut(s)	306, 315, 462, 492, 533
TaqI	TCGA	2 cut(s)	351, 582
TasI	AATT	3 cut(s)	222, 380, 462
TauI	GCSGC	4 cut(s)	164, 173, 242, 251
TfiI	GAWTC	1 cut(s)	521
Tru1I	TTAA	2 cut(s)	137, 149
Tru9I	TTAA	2 cut(s)	137, 149
TscAI	CASTG	2 cut(s)	163, 382
TseFI	GTSAC	3 cut(s)	28, 526, 613
TseI	GCWGC	4 cut(s)	164, 167, 442, 593
Tsp45I	GTSAC	3 cut(s)	28, 526, 613
TspDTI	ATGAA	1 cut(s)	692
TspRI	CASTG	2 cut(s)	163, 382
XapI	RAATTY	2 cut(s)	222, 380
XceI	RCATGY	1 cut(s)	701
XspI	CTAG	3 cut(s)	446, 476, 513
ZraI	GACGTC	2 cut(s)	313, 531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.