Rh1CG013800

Thylakoid lumenal 19 kDa protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0005710
Physical Location & Seq
Forward (+)
2171360 .. 2171918
559 bp
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UTR
Exon/CDS
Intron
Rh1CG013800.1

Sequence Viewer

Length: 420 bp
ATGGTGAATACCATGGCAACTCCAACAAAAAGACTTCGGCCGAGTACAAATGGAATTGACAGTGAATTCTACAATCCGAAGAAGAAGACGGTGAAAGAGTACCTGTCTTACCTAGGTGGGTTTCAGCAGCTAGCTACGAAGGTCGTGGTGCTGAACAATCTAGCTCTGTCAAACGTGAACTTGCAGGACTTGATAGCTAGTGCTGATGCCGTGACGTCGGAGGAGAAGAAAGACGAGAAGGGACAGGTTTACTATGTGTATGAGATCAATGGGGTCGCAACACATAGTTTCATTTCAGTGACTTGTGCTAACAACAAGCTTTATGCTCATTTTGTCAATGCGCCTACCCCCGAGTGGAACCACGACAATGATATGTTGAAGCATGTTCATGAGTCTTTCAAAACTATTGGATCCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PsbP

Protein Analysis

139

Amino Acids

15.6

Weight (kDa)

6.96

Isoelectric Point (pI)

27.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbP PF01789 33 - 134 4.5e-08 PsbP
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 218
AclWI GGATC 2 cut(s) 405, 418
AcoI YGGCCR 1 cut(s) 38
AcsI RAATTY 1 cut(s) 65
AcyI GRCGYC 1 cut(s) 215
AfaI GTAC 2 cut(s) 46, 101
AfiI CCNNNNNNNGG 1 cut(s) 354
AgsI TTSAA 2 cut(s) 379, 400
AluBI AGCT 5 cut(s) 130, 134, 164, 197, 319
AluI AGCT 5 cut(s) 130, 134, 164, 197, 319
AlwI GGATC 2 cut(s) 405, 418
Ama87I CYCGRG 1 cut(s) 350
AoxI GGCC 1 cut(s) 38
ApeKI GCWGC 1 cut(s) 127
ApoI RAATTY 1 cut(s) 65
AspA2I CCTAGG 1 cut(s) 112
AspLEI GCGC 1 cut(s) 343
AsuHPI GGTGA 2 cut(s) 16, 103
AsuNHI GCTAGC 1 cut(s) 130
AvaI CYCGRG 1 cut(s) 350
AvrII CCTAGG 1 cut(s) 112
BamHI GGATCC 1 cut(s) 410
BbsI GAAGAC 1 cut(s) 92
BbvI GCAGC 1 cut(s) 139
BceAI ACGGC 1 cut(s) 194
BfaI CTAG 4 cut(s) 113, 131, 161, 198
BisI GCNGC 1 cut(s) 128
BlnI CCTAGG 1 cut(s) 112
BlsI GCNGC 1 cut(s) 129
BmeT110I CYCGRG 1 cut(s) 350
BmiI GGNNCC 2 cut(s) 359, 412
BmsI GCATC 1 cut(s) 196
BmtI GCTAGC 1 cut(s) 134
BpiI GAAGAC 1 cut(s) 92
BsaHI GRCGYC 1 cut(s) 215
BsaJI CCNNGG 2 cut(s) 12, 112
Bsc4I CCNNNNNNNGG 1 cut(s) 354
BseDI CCNNGG 2 cut(s) 12, 112
BseLI CCNNNNNNNGG 1 cut(s) 354
BseRI GAGGAG 1 cut(s) 236
BseX3I CGGCCG 1 cut(s) 38
BseXI GCAGC 1 cut(s) 139
Bsh1285I CGRYCG 1 cut(s) 41
BshFI GGCC 1 cut(s) 40
BsiEI CGRYCG 1 cut(s) 41
BsiHKCI CYCGRG 1 cut(s) 350
BslFI GGGAC 1 cut(s) 255
BslI CCNNNNNNNGG 1 cut(s) 354
BsmFI GGGAC 1 cut(s) 255
BsnI GGCC 1 cut(s) 40
BsoBI CYCGRG 1 cut(s) 350
Bsp143I GATC 2 cut(s) 264, 410
Bsp19I CCATGG 1 cut(s) 12
BspANI GGCC 1 cut(s) 40
BspHI TCATGA 1 cut(s) 388
BspLI GGNNCC 2 cut(s) 359, 412
BspOI GCTAGC 1 cut(s) 134
BspPI GGATC 2 cut(s) 405, 418
BssECI CCNNGG 2 cut(s) 12, 112
BssMI GATC 2 cut(s) 264, 410
BssNI GRCGYC 1 cut(s) 215
BssT1I CCWWGG 2 cut(s) 12, 112
Bst4CI ACNGT 2 cut(s) 62, 91
BstACI GRCGYC 1 cut(s) 215
BstC8I GCNNGC 1 cut(s) 132
BstDSI CCRYGG 1 cut(s) 12
BstHHI GCGC 1 cut(s) 343
BstKTI GATC 2 cut(s) 267, 413
BstMBI GATC 2 cut(s) 264, 410
BstMCI CGRYCG 1 cut(s) 41
BstNSI RCATGY 1 cut(s) 386
BstV1I GCAGC 1 cut(s) 139
BstV2I GAAGAC 1 cut(s) 92
BstX2I RGATCY 1 cut(s) 410
BstYI RGATCY 1 cut(s) 410
BstZI CGGCCG 1 cut(s) 38
BsuRI GGCC 1 cut(s) 40
BtgI CCRYGG 1 cut(s) 12
BtsIMutI CAGTG 2 cut(s) 67, 303
Cac8I GCNNGC 1 cut(s) 132
CciI TCATGA 1 cut(s) 388
CfoI GCGC 1 cut(s) 343
Csp6I GTAC 2 cut(s) 45, 100
CviAII CATG 3 cut(s) 13, 383, 389
CviJI RGCY 6 cut(s) 40, 130, 134, 164, 197, 319
CviKI_1 RGCY 6 cut(s) 40, 130, 134, 164, 197, 319
CviQI GTAC 2 cut(s) 45, 100
DpnI GATC 2 cut(s) 266, 412
DpnII GATC 2 cut(s) 264, 410
EaeI YGGCCR 1 cut(s) 38
EagI CGGCCG 1 cut(s) 38
EclXI CGGCCG 1 cut(s) 38
Eco130I CCWWGG 2 cut(s) 12, 112
Eco52I CGGCCG 1 cut(s) 38
Eco88I CYCGRG 1 cut(s) 350
EcoRI GAATTC 1 cut(s) 65
EcoT14I CCWWGG 2 cut(s) 12, 112
ErhI CCWWGG 2 cut(s) 12, 112
FaeI CATG 3 cut(s) 16, 386, 392
FaiI YATR 8 cut(s) 14, 255, 261, 285, 324, 374, 384, 390
FaqI GGGAC 1 cut(s) 255
FatI CATG 3 cut(s) 12, 382, 388
Fnu4HI GCNGC 1 cut(s) 128
Fsp4HI GCNGC 1 cut(s) 128
FspBI CTAG 4 cut(s) 113, 131, 161, 198
GlaI GCGC 1 cut(s) 342
GluI GCNGC 1 cut(s) 128
HaeIII GGCC 1 cut(s) 40
HhaI GCGC 1 cut(s) 343
Hin1I GRCGYC 1 cut(s) 215
Hin1II CATG 3 cut(s) 16, 386, 392
Hin6I GCGC 1 cut(s) 341
HinP1I GCGC 1 cut(s) 341
HindIII AAGCTT 1 cut(s) 317
HinfI GANTC 1 cut(s) 392
HphI GGTGA 2 cut(s) 16, 103
Hpy166II GTNNAC 2 cut(s) 178, 250
Hpy188I TCNGA 2 cut(s) 78, 220
Hpy188III TCNNGA 1 cut(s) 389
Hpy8I GTNNAC 2 cut(s) 178, 250
Hpy99I CGWCG 1 cut(s) 220
HpyAV CCTTC 2 cut(s) 133, 232
HpyCH4III ACNGT 2 cut(s) 62, 91
HpyCH4IV ACGT 2 cut(s) 174, 215
HpyCH4V TGCA 1 cut(s) 184
HpySE526I ACGT 2 cut(s) 174, 215
Hsp92I GRCGYC 1 cut(s) 215
Hsp92II CATG 3 cut(s) 16, 386, 392
HspAI GCGC 1 cut(s) 341
Kzo9I GATC 2 cut(s) 264, 410
LpnPI CCDG 3 cut(s) 116, 170, 230
Lsp1109I GCAGC 1 cut(s) 139
LweI GCATC 1 cut(s) 196
MaeI CTAG 4 cut(s) 113, 131, 161, 198
MaeII ACGT 2 cut(s) 174, 215
MaeIII GTNAC 2 cut(s) 211, 298
MalI GATC 2 cut(s) 266, 412
MboI GATC 2 cut(s) 264, 410
MboII GAAGA 4 cut(s) 91, 94, 97, 238
MflI RGATCY 1 cut(s) 410
MluCI AATT 2 cut(s) 54, 65
MlyI GAGTC 1 cut(s) 401
MmeI TCCRAC 2 cut(s) 47, 198
MnlI CCTC 1 cut(s) 214
MslI CAYNNNNRTG 3 cut(s) 296, 366, 387
NcoI CCATGG 1 cut(s) 12
NdeII GATC 2 cut(s) 264, 410
NheI GCTAGC 1 cut(s) 130
NlaIII CATG 3 cut(s) 16, 386, 392
NlaIV GGNNCC 2 cut(s) 359, 412
NmeAIII GCCGAG 1 cut(s) 66
NmuCI GTSAC 2 cut(s) 211, 298
NspI RCATGY 1 cut(s) 386
PagI TCATGA 1 cut(s) 388
PkrI GCNGC 1 cut(s) 129
PleI GAGTC 1 cut(s) 400
PpsI GAGTC 1 cut(s) 400
PspN4I GGNNCC 2 cut(s) 359, 412
PsuI RGATCY 1 cut(s) 410
RsaI GTAC 2 cut(s) 46, 101
RsaNI GTAC 2 cut(s) 45, 100
RseI CAYNNNNRTG 3 cut(s) 296, 366, 387
SatI GCNGC 1 cut(s) 128
Sau3AI GATC 2 cut(s) 264, 410
SchI GAGTC 1 cut(s) 401
SfaNI GCATC 1 cut(s) 196
SmiMI CAYNNNNRTG 3 cut(s) 296, 366, 387
Sse9I AATT 2 cut(s) 54, 65
SspMI CTAG 4 cut(s) 113, 131, 161, 198
StyI CCWWGG 2 cut(s) 12, 112
TaaI ACNGT 2 cut(s) 62, 91
TaiI ACGT 2 cut(s) 177, 218
TasI AATT 2 cut(s) 54, 65
TatI WGTACW 1 cut(s) 44
TscAI CASTG 2 cut(s) 67, 303
TseFI GTSAC 2 cut(s) 211, 298
TseI GCWGC 1 cut(s) 127
Tsp45I GTSAC 2 cut(s) 211, 298
TspDTI ATGAA 2 cut(s) 280, 377
TspRI CASTG 2 cut(s) 67, 303
XapI RAATTY 1 cut(s) 65
XceI RCATGY 1 cut(s) 386
XmaJI CCTAGG 1 cut(s) 112
XspI CTAG 4 cut(s) 113, 131, 161, 198
ZraI GACGTC 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.