Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0005710

Physical Location & Seq

Genomic Coordinates Forward (+)

631074 .. 631817

Gene Structure 744 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g00740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGCTACCATGTTCTCACCCTCAACCTTCTCCTCCACCACCGCCACCAACACCACCATCACATCCCCAAAACCATCCCCAGCTCCACTACCCCCAAAATCCCACCTCCCCATCCCACCCTGCAAACCACTCCTAACTACCTTAACCACCGCACTAACTGCCACCGCCGCTGCAGCTGCCATCCTAACCGCCTCTCCACCCTCATTAGCGGACCCCACAGCAACAACTTACCAAATCTACTATGGCACTGCTGCCAGCGCGGCCAACTATGGCGGTTACGGTGGCAACTCCGACAAGAAGGCCTCCGCTGAGTATGTCTATGATGTGCCAGATGGATGGAAAGAGCGTTTGGTATCAAAAGTCGAAAAGGGTACAAATGGGACTGATAGCGAATTTTATAACCCGAAGAAGAAGTCAGAGAAAGAGTACTTGACATTCCTTTCCGGGTTTAGGCAACTAGCACCGAAGGATGTGGTGCTGAACAATTTGGCTCTGTCAGATGTGAACTTGCAGGACTTGCTAGCGAGCGCAGATAATGTGACATCGGAGGAAAGGAAGGACGAGAAGGGACAGGTTTACTACGTGTATGAGATCGATCGGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PsbP

Protein Analysis

202

Amino Acids

21.56

Weight (kDa)

5.48

Isoelectric Point (pI)

38.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005710)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63540
fragaria_vesca	FvH4_7g00900
malus_domestica	MD02G1313800.v1.1 MD07G1008600.v1.1
prunus_persica	Prupe.2G012000_v2.0.a1
pyrus_communis	pycom02g26310 pycom07g00740
rosa_chinensis	RchiOBHm_Chr1g0315791 RchiOBHm_Chr3g0473601
rosa_laevigata	RLG00000024001 RLG00000030732
rosa_multiflora	Rmu_co8131984.1_g000001 Rmu_sc0003069.1_g000013 Rmu_sc0009816.1_g000005 Rmu_sc0033628.1_g000002 Rmu_ssc0000154.1_g000002
rosa_roxburghii	Rroxscaffold_6G00408030
rosa_rugosa	Rorug01G0005600 Rorug03G0133200
rosa_samantha	Rh1AG016500 Rh1BG008900 Rh1CG013800 Rh3AG184900 Rh3BG212900 Rh3CG209400 Rh3DG208700
rosa_wichuraiana	Rw1G000970 Rw3G015960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	399
AccII	CGCG	1 cut(s)	260
AciI	CCGC	9 cut(s)	42, 150, 165, 168, 189, 209, 260, 273, 306
AcoI	YGGCCR	1 cut(s)	261
AcsI	RAATTY	1 cut(s)	392
AfaI	GTAC	2 cut(s)	373, 428
AfiI	CCNNNNNNNGG	1 cut(s)	450
AflIII	ACRYGT	1 cut(s)	582
AjuI	GAANNNNNNNTTGG	2 cut(s)	332, 364
AluBI	AGCT	2 cut(s)	83, 176
AluI	AGCT	2 cut(s)	83, 176
AoxI	GGCC	2 cut(s)	261, 300
ApeKI	GCWGC	4 cut(s)	170, 173, 176, 251
ApoI	RAATTY	1 cut(s)	392
ArsI	GACNNNNNNTTYG	2 cut(s)	398, 430
AspLEI	GCGC	2 cut(s)	260, 530
AspS9I	GGNCC	1 cut(s)	211
AsuC2I	CCSGG	1 cut(s)	445
AsuHPI	GGTGA	1 cut(s)	9
AsuNHI	GCTAGC	1 cut(s)	520
AvaII	GGWCC	1 cut(s)	211
BbvI	GCAGC	4 cut(s)	157, 163, 185, 238
BccI	CCATC	6 cut(s)	65, 82, 119, 188, 326, 330
BcnI	CCSGG	1 cut(s)	445
BfaI	CTAG	2 cut(s)	458, 521
BfmI	CTRYAG	1 cut(s)	171
BglI	GCCNNNNNGGC	1 cut(s)	260
BisI	GCNGC	6 cut(s)	168, 171, 174, 177, 252, 261
BlsI	GCNGC	6 cut(s)	169, 172, 175, 178, 253, 262
BmcAI	AGTACT	1 cut(s)	428
Bme1390I	CCNGG	1 cut(s)	445
Bme18I	GGWCC	1 cut(s)	211
BmgT120I	GGNCC	1 cut(s)	211
BmiI	GGNNCC	1 cut(s)	213
BmrFI	CCNGG	1 cut(s)	445
BmtI	GCTAGC	1 cut(s)	524
BpuMI	CCSGG	1 cut(s)	445
Bsa29I	ATCGAT	1 cut(s)	594
BsaAI	YACGTR	1 cut(s)	583
BsaXI	ACNNNNNCTCC	2 cut(s)	178, 208
Bsc4I	CCNNNNNNNGG	1 cut(s)	450
BseCI	ATCGAT	1 cut(s)	594
BseGI	GGATG	6 cut(s)	62, 74, 111, 180, 341, 475
BseLI	CCNNNNNNNGG	1 cut(s)	450
BseMII	CTCAG	1 cut(s)	300
BseRI	GAGGAG	1 cut(s)	22
BseXI	GCAGC	4 cut(s)	157, 163, 185, 238
BseYI	CCCAGC	1 cut(s)	79
Bsh1236I	CGCG	1 cut(s)	260
Bsh1285I	CGRYCG	1 cut(s)	598
BshFI	GGCC	2 cut(s)	263, 302
BshVI	ATCGAT	1 cut(s)	594
BsiEI	CGRYCG	1 cut(s)	598
BsiSI	CCGG	1 cut(s)	444
BslFI	GGGAC	2 cut(s)	394, 582
BslI	CCNNNNNNNGG	1 cut(s)	450
BsmFI	GGGAC	2 cut(s)	394, 582
BsnI	GGCC	2 cut(s)	263, 302
Bsp143I	GATC	2 cut(s)	591, 595
BspACI	CCGC	9 cut(s)	42, 150, 165, 168, 189, 209, 260, 273, 306
BspANI	GGCC	2 cut(s)	263, 302
BspCNI	CTCAG	1 cut(s)	301
BspDI	ATCGAT	1 cut(s)	594
BspFNI	CGCG	1 cut(s)	260
BspLI	GGNNCC	1 cut(s)	213
BspMAI	CTGCAG	1 cut(s)	175
BspOI	GCTAGC	1 cut(s)	524
BssMI	GATC	2 cut(s)	591, 595
Bst4CI	ACNGT	1 cut(s)	281
BstAPI	GCANNNNNTGC	2 cut(s)	158, 517
BstBAI	YACGTR	1 cut(s)	583
BstC8I	GCNNGC	3 cut(s)	256, 522, 526
BstDEI	CTNAG	1 cut(s)	309
BstF5I	GGATG	6 cut(s)	62, 74, 111, 180, 341, 475
BstFNI	CGCG	1 cut(s)	260
BstHHI	GCGC	2 cut(s)	260, 530
BstKTI	GATC	2 cut(s)	594, 598
BstMBI	GATC	2 cut(s)	591, 595
BstMCI	CGRYCG	1 cut(s)	598
BstMWI	GCNNNNNNNGC	7 cut(s)	158, 167, 173, 176, 257, 260, 517
BstSCI	CCNGG	1 cut(s)	443
BstSFI	CTRYAG	1 cut(s)	171
BstUI	CGCG	1 cut(s)	260
BstV1I	GCAGC	4 cut(s)	157, 163, 185, 238
BstXI	CCANNNNNNTGG	1 cut(s)	336
Bsu15I	ATCGAT	1 cut(s)	594
BsuRI	GGCC	2 cut(s)	263, 302
BsuTUI	ATCGAT	1 cut(s)	594
BtsCI	GGATG	6 cut(s)	62, 74, 111, 180, 341, 475
BtsI	GCAGTG	1 cut(s)	246
BtsIMutI	CAGTG	1 cut(s)	246
Cac8I	GCNNGC	3 cut(s)	256, 522, 526
CfoI	GCGC	2 cut(s)	260, 530
Cfr13I	GGNCC	1 cut(s)	211
ClaI	ATCGAT	1 cut(s)	594
Csp6I	GTAC	2 cut(s)	372, 427
CviAII	CATG	1 cut(s)	10
CviJI	RGCY	6 cut(s)	5, 83, 176, 263, 302, 491
CviKI_1	RGCY	6 cut(s)	5, 83, 176, 263, 302, 491
CviQI	GTAC	2 cut(s)	372, 427
DdeI	CTNAG	1 cut(s)	309
DpnI	GATC	2 cut(s)	593, 597
DpnII	GATC	2 cut(s)	591, 595
EaeI	YGGCCR	1 cut(s)	261
Eco147I	AGGCCT	1 cut(s)	302
Eco47I	GGWCC	1 cut(s)	211
FaeI	CATG	1 cut(s)	13
FaiI	YATR	7 cut(s)	11, 243, 270, 315, 321, 399, 588
FaqI	GGGAC	2 cut(s)	394, 582
FatI	CATG	1 cut(s)	9
Fnu4HI	GCNGC	6 cut(s)	168, 171, 174, 177, 252, 261
FokI	GGATG	6 cut(s)	49, 61, 98, 167, 348, 482
Fsp4HI	GCNGC	6 cut(s)	168, 171, 174, 177, 252, 261
FspBI	CTAG	2 cut(s)	458, 521
GlaI	GCGC	2 cut(s)	259, 529
GluI	GCNGC	6 cut(s)	168, 171, 174, 177, 252, 261
GsaI	CCCAGC	1 cut(s)	83
HaeIII	GGCC	2 cut(s)	263, 302
HapII	CCGG	1 cut(s)	444
HhaI	GCGC	2 cut(s)	260, 530
Hin1II	CATG	1 cut(s)	13
Hin6I	GCGC	2 cut(s)	258, 528
HinP1I	GCGC	2 cut(s)	258, 528
HpaII	CCGG	1 cut(s)	444
HphI	GGTGA	1 cut(s)	9
Hpy166II	GTNNAC	2 cut(s)	505, 577
Hpy188I	TCNGA	5 cut(s)	292, 418, 499, 547, 600
Hpy8I	GTNNAC	2 cut(s)	505, 577
HpyAV	CCTTC	5 cut(s)	37, 292, 460, 550, 559
HpyCH4III	ACNGT	1 cut(s)	281
HpyCH4IV	ACGT	1 cut(s)	582
HpyCH4V	TGCA	3 cut(s)	123, 173, 511
HpyF10VI	GCNNNNNNNGC	7 cut(s)	158, 167, 173, 176, 257, 260, 517
HpyF3I	CTNAG	1 cut(s)	309
HpySE526I	ACGT	1 cut(s)	582
Hsp92II	CATG	1 cut(s)	13
HspAI	GCGC	2 cut(s)	258, 528
Kzo9I	GATC	2 cut(s)	591, 595
LmnI	GCTCC	1 cut(s)	88
LpnPI	CCDG	7 cut(s)	93, 133, 268, 342, 457, 497, 557
Lsp1109I	GCAGC	4 cut(s)	157, 163, 185, 238
MaeI	CTAG	2 cut(s)	458, 521
MaeII	ACGT	1 cut(s)	582
MaeIII	GTNAC	2 cut(s)	275, 538
MalI	GATC	2 cut(s)	593, 597
MboI	GATC	2 cut(s)	591, 595
MboII	GAAGA	2 cut(s)	418, 421
MluCI	AATT	2 cut(s)	392, 484
MmeI	TCCRAC	1 cut(s)	315
MnlI	CCTC	7 cut(s)	31, 43, 116, 202, 211, 313, 541
MseI	TTAA	1 cut(s)	143
MspA1I	CMGCKG	3 cut(s)	170, 176, 308
MspI	CCGG	1 cut(s)	444
MspR9I	CCNGG	1 cut(s)	445
MvnI	CGCG	1 cut(s)	260
MwoI	GCNNNNNNNGC	7 cut(s)	158, 167, 173, 176, 257, 260, 517
NciI	CCSGG	1 cut(s)	445
NdeII	GATC	2 cut(s)	591, 595
NheI	GCTAGC	1 cut(s)	520
NlaIII	CATG	1 cut(s)	13
NlaIV	GGNNCC	1 cut(s)	213
NmuCI	GTSAC	1 cut(s)	538
PceI	AGGCCT	1 cut(s)	302
PkrI	GCNGC	6 cut(s)	169, 172, 175, 178, 253, 262
Ple19I	CGATCG	1 cut(s)	598
Ppu21I	YACGTR	1 cut(s)	583
PsiI	TTATAA	1 cut(s)	399
PspFI	CCCAGC	1 cut(s)	79
PspN4I	GGNNCC	1 cut(s)	213
PspPI	GGNCC	1 cut(s)	211
PstI	CTGCAG	1 cut(s)	175
PvuI	CGATCG	1 cut(s)	598
PvuII	CAGCTG	1 cut(s)	176
RsaI	GTAC	2 cut(s)	373, 428
RsaNI	GTAC	2 cut(s)	372, 427
SaqAI	TTAA	1 cut(s)	143
SatI	GCNGC	6 cut(s)	168, 171, 174, 177, 252, 261
Sau3AI	GATC	2 cut(s)	591, 595
Sau96I	GGNCC	1 cut(s)	211
ScaI	AGTACT	1 cut(s)	428
ScrFI	CCNGG	1 cut(s)	445
SetI	ASST	7 cut(s)	29, 85, 108, 143, 178, 576, 585
SfcI	CTRYAG	1 cut(s)	171
SinI	GGWCC	1 cut(s)	211
Sse9I	AATT	2 cut(s)	392, 484
SseBI	AGGCCT	1 cut(s)	302
SsiI	CCGC	9 cut(s)	42, 150, 165, 168, 189, 209, 260, 273, 306
SspMI	CTAG	2 cut(s)	458, 521
StuI	AGGCCT	1 cut(s)	302
StyD4I	CCNGG	1 cut(s)	443
TaaI	ACNGT	1 cut(s)	281
TaiI	ACGT	1 cut(s)	585
TaqI	TCGA	2 cut(s)	363, 594
TasI	AATT	2 cut(s)	392, 484
TatI	WGTACW	1 cut(s)	426
TauI	GCSGC	2 cut(s)	170, 263
Tru1I	TTAA	1 cut(s)	143
Tru9I	TTAA	1 cut(s)	143
TscAI	CASTG	1 cut(s)	253
TseFI	GTSAC	1 cut(s)	538
TseI	GCWGC	4 cut(s)	170, 173, 176, 251
Tsp45I	GTSAC	1 cut(s)	538
TspRI	CASTG	1 cut(s)	253
VpaK11BI	GGWCC	1 cut(s)	211
XapI	RAATTY	1 cut(s)	392
XcmI	CCANNNNNNNNNTGG	1 cut(s)	239
XspI	CTAG	2 cut(s)	458, 521
ZrmI	AGTACT	1 cut(s)	428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.