Rmu_ssc0000154.1_g000002

Thylakoid lumenal 19 kDa protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000154.1
OG0005710
Physical Location & Seq
Forward (+)
2035 .. 2545
511 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000154.1_g000002.1.cds

Sequence Viewer

Length: 372 bp
atggcggataaggtggcaactccgacaagaagacttcggtcgagtacaaatggaactgacagtgaattctacaatccgaagaagaagacggagaaagagtacctgtcttacctcggtgggttttggcagctagctacgaaggacgtggtgctgaacaatctagctctgtcaaacgtgaacttgcaggacttgatagctagtgttgatgccatgacgtcggaggagaagaaagacgagaagggacaggtttactatgtgtatgagagcaatgaggttgcagcatatagtttgatttcagtgacttgtgctaacaacaagctttatgctcattttgtcaatgcgcctacccccgagtgggaaccgcgacaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PsbP

Protein Analysis

123

Amino Acids

13.92

Weight (kDa)

5.41

Isoelectric Point (pI)

36.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 218
AccII CGCG 1 cut(s) 364
AciI CCGC 2 cut(s) 5, 362
AcsI RAATTY 1 cut(s) 65
AcyI GRCGYC 1 cut(s) 215
AfaI GTAC 2 cut(s) 46, 101
AfiI CCNNNNNNNGG 2 cut(s) 354, 355
AjiI CACGTC 1 cut(s) 145
AluBI AGCT 5 cut(s) 130, 134, 164, 197, 319
AluI AGCT 5 cut(s) 130, 134, 164, 197, 319
Ama87I CYCGRG 1 cut(s) 350
ApeKI GCWGC 2 cut(s) 127, 278
ApoI RAATTY 1 cut(s) 65
AspLEI GCGC 1 cut(s) 343
AsuNHI GCTAGC 1 cut(s) 130
AvaI CYCGRG 1 cut(s) 350
BbsI GAAGAC 2 cut(s) 37, 92
BbvI GCAGC 2 cut(s) 139, 290
BfaI CTAG 3 cut(s) 131, 161, 198
BisI GCNGC 2 cut(s) 128, 279
BlsI GCNGC 2 cut(s) 129, 280
BmeT110I CYCGRG 1 cut(s) 350
BmgBI CACGTC 1 cut(s) 145
BmiI GGNNCC 1 cut(s) 360
BmsI GCATC 1 cut(s) 196
BmtI GCTAGC 1 cut(s) 134
BoxI GACNNNNGTC 1 cut(s) 37
BpiI GAAGAC 2 cut(s) 37, 92
BsaHI GRCGYC 1 cut(s) 215
BsaJI CCNNGG 1 cut(s) 112
BsaXI ACNNNNNCTCC 2 cut(s) 83, 113
Bsc4I CCNNNNNNNGG 2 cut(s) 354, 355
Bse3DI GCAATG 1 cut(s) 274
BseDI CCNNGG 1 cut(s) 112
BseLI CCNNNNNNNGG 2 cut(s) 354, 355
BseMI GCAATG 1 cut(s) 274
BseRI GAGGAG 1 cut(s) 236
BseXI GCAGC 2 cut(s) 139, 290
Bsh1236I CGCG 1 cut(s) 364
Bsh1285I CGRYCG 1 cut(s) 41
BsiEI CGRYCG 1 cut(s) 41
BsiHKCI CYCGRG 1 cut(s) 350
BslFI GGGAC 1 cut(s) 255
BslI CCNNNNNNNGG 2 cut(s) 354, 355
BsmFI GGGAC 1 cut(s) 255
BsoBI CYCGRG 1 cut(s) 350
BspACI CCGC 2 cut(s) 5, 362
BspFNI CGCG 1 cut(s) 364
BspLI GGNNCC 1 cut(s) 360
BspOI GCTAGC 1 cut(s) 134
BsrDI GCAATG 1 cut(s) 274
BssECI CCNNGG 1 cut(s) 112
BssNI GRCGYC 1 cut(s) 215
Bst4CI ACNGT 1 cut(s) 62
BstACI GRCGYC 1 cut(s) 215
BstC8I GCNNGC 1 cut(s) 132
BstFNI CGCG 1 cut(s) 364
BstHHI GCGC 1 cut(s) 343
BstMCI CGRYCG 1 cut(s) 41
BstPAI GACNNNNGTC 1 cut(s) 37
BstUI CGCG 1 cut(s) 364
BstV1I GCAGC 2 cut(s) 139, 290
BstV2I GAAGAC 2 cut(s) 37, 92
BtrI CACGTC 1 cut(s) 145
BtsIMutI CAGTG 2 cut(s) 67, 303
Cac8I GCNNGC 1 cut(s) 132
CfoI GCGC 1 cut(s) 343
Csp6I GTAC 2 cut(s) 45, 100
CviAII CATG 1 cut(s) 211
CviJI RGCY 5 cut(s) 130, 134, 164, 197, 319
CviKI_1 RGCY 5 cut(s) 130, 134, 164, 197, 319
CviQI GTAC 2 cut(s) 45, 100
EciI GGCGGA 1 cut(s) 20
Eco88I CYCGRG 1 cut(s) 350
EcoRI GAATTC 1 cut(s) 65
FaeI CATG 1 cut(s) 214
FaiI YATR 6 cut(s) 212, 255, 261, 283, 285, 324
FaqI GGGAC 1 cut(s) 255
FatI CATG 1 cut(s) 210
Fnu4HI GCNGC 2 cut(s) 128, 279
Fsp4HI GCNGC 2 cut(s) 128, 279
FspBI CTAG 3 cut(s) 131, 161, 198
GlaI GCGC 1 cut(s) 342
GluI GCNGC 2 cut(s) 128, 279
HhaI GCGC 1 cut(s) 343
Hin1I GRCGYC 1 cut(s) 215
Hin1II CATG 1 cut(s) 214
Hin6I GCGC 1 cut(s) 341
HinP1I GCGC 1 cut(s) 341
HindIII AAGCTT 1 cut(s) 317
Hpy166II GTNNAC 2 cut(s) 178, 250
Hpy188I TCNGA 3 cut(s) 24, 78, 220
Hpy8I GTNNAC 2 cut(s) 178, 250
Hpy99I CGWCG 1 cut(s) 220
HpyAV CCTTC 2 cut(s) 133, 232
HpyCH4III ACNGT 1 cut(s) 62
HpyCH4IV ACGT 3 cut(s) 144, 174, 215
HpyCH4V TGCA 2 cut(s) 184, 278
HpySE526I ACGT 3 cut(s) 144, 174, 215
Hsp92I GRCGYC 1 cut(s) 215
Hsp92II CATG 1 cut(s) 214
HspAI GCGC 1 cut(s) 341
LpnPI CCDG 3 cut(s) 116, 170, 230
Lsp1109I GCAGC 2 cut(s) 139, 290
LweI GCATC 1 cut(s) 196
MaeI CTAG 3 cut(s) 131, 161, 198
MaeII ACGT 3 cut(s) 144, 174, 215
MaeIII GTNAC 1 cut(s) 298
MboII GAAGA 5 cut(s) 42, 91, 94, 97, 238
MluCI AATT 1 cut(s) 65
MmeI TCCRAC 2 cut(s) 47, 198
MnlI CCTC 3 cut(s) 122, 214, 265
MvnI CGCG 1 cut(s) 364
NheI GCTAGC 1 cut(s) 130
NlaIII CATG 1 cut(s) 214
NlaIV GGNNCC 1 cut(s) 360
NmuCI GTSAC 1 cut(s) 298
PkrI GCNGC 2 cut(s) 129, 280
PshAI GACNNNNGTC 1 cut(s) 37
PspN4I GGNNCC 1 cut(s) 360
RsaI GTAC 2 cut(s) 46, 101
RsaNI GTAC 2 cut(s) 45, 100
SatI GCNGC 2 cut(s) 128, 279
SfaNI GCATC 1 cut(s) 196
Sse9I AATT 1 cut(s) 65
SsiI CCGC 2 cut(s) 5, 362
SspMI CTAG 3 cut(s) 131, 161, 198
TaaI ACNGT 1 cut(s) 62
TaiI ACGT 3 cut(s) 147, 177, 218
TaqI TCGA 1 cut(s) 41
TaqII GACCGA 1 cut(s) 27
TasI AATT 1 cut(s) 65
TatI WGTACW 1 cut(s) 44
TscAI CASTG 2 cut(s) 67, 303
TseFI GTSAC 1 cut(s) 298
TseI GCWGC 2 cut(s) 127, 278
Tsp45I GTSAC 1 cut(s) 298
TspGWI ACGGA 1 cut(s) 104
TspRI CASTG 2 cut(s) 67, 303
XapI RAATTY 1 cut(s) 65
XspI CTAG 3 cut(s) 131, 161, 198
ZraI GACGTC 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.