AT3G63540

Mog1 PsbP DUF1795-like photosystem II reaction center PsbP family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0005710
Physical Location & Seq
Reverse (-)
23458642 .. 23459804
1163 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G63540.1

Sequence Viewer

Length: 432 bp
AGGGTAGAAGTAGAGGAAGGGTGGAAGGAGAGGCTGGTGTCGAAGGTGGAGAAGGGGACAAACGGAACAGACAGCGAATTCTATAACCCGAAGAAGAAGACGGAGAAGGAGTACCTGACATTCCTGGCGGGATTCAGACAGCTGGCGCCGAGGGATGTGATTCTGAACAACCTTGCCTTGTCGGACGTGGAGCTGCAGGATTTGATAGCCGGCGCGGACAAAGTGGTGTCGGAGGAGAGGAAGGACGAGACAGGGCAGGTCTACTATCTGTACGAGATAGATGGGGTTGGAAAGCACAGCCTGATCACAGTCACTTGCTCCAAGAACAAGCTCTACGCCCATTTCGTAAACGCCCCTGCGCCCGAGTGGAACCGCGACCACGATACATTAACCCACCTTCGCGACTCCTTCAAGACTGTCTCTTCTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PsbP

Protein Analysis

143

Amino Acids

16.28

Weight (kDa)

5.6

Isoelectric Point (pI)

31.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbP PF01789 73 - 138 6.3e-06 PsbP
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 247
AccB1I GGYRCC 1 cut(s) 145
AccI GTMKAC 1 cut(s) 261
AccII CGCG 3 cut(s) 215, 375, 402
AciI CCGC 3 cut(s) 128, 215, 373
AcsI RAATTY 1 cut(s) 77
AcyI GRCGYC 1 cut(s) 146
AfaI GTAC 2 cut(s) 113, 272
AgsI TTSAA 1 cut(s) 412
AjiI CACGTC 1 cut(s) 187
AjnI CCWGG 1 cut(s) 123
AluBI AGCT 3 cut(s) 142, 193, 331
AluI AGCT 3 cut(s) 142, 193, 331
Alw26I GTCTC 2 cut(s) 242, 424
Ama87I CYCGRG 1 cut(s) 362
ApeKI GCWGC 1 cut(s) 193
ApoI RAATTY 1 cut(s) 77
AspLEI GCGC 3 cut(s) 148, 215, 361
AvaI CYCGRG 1 cut(s) 362
BanI GGYRCC 1 cut(s) 145
BbsI GAAGAC 1 cut(s) 104
BbvI GCAGC 1 cut(s) 180
BccI CCATC 1 cut(s) 275
BciT130I CCWGG 1 cut(s) 125
BclI TGATCA 1 cut(s) 303
BcoDI GTCTC 2 cut(s) 242, 424
BfmI CTRYAG 1 cut(s) 194
BfoI RGCGCY 1 cut(s) 149
BfuAI ACCTGC 1 cut(s) 247
BisI GCNGC 1 cut(s) 194
BlsI GCNGC 1 cut(s) 195
Bme1390I CCNGG 1 cut(s) 125
BmeT110I CYCGRG 1 cut(s) 362
BmgBI CACGTC 1 cut(s) 187
BmiI GGNNCC 2 cut(s) 147, 371
BmrFI CCNGG 1 cut(s) 125
BpiI GAAGAC 1 cut(s) 104
BsaHI GRCGYC 1 cut(s) 146
BsaJI CCNNGG 1 cut(s) 149
BsaXI ACNNNNNCTCC 2 cut(s) 95, 125
Bse118I RCCGGY 1 cut(s) 209
BseBI CCWGG 1 cut(s) 125
BseDI CCNNGG 1 cut(s) 149
BseGI GGATG 1 cut(s) 160
BseRI GAGGAG 1 cut(s) 248
BseXI GCAGC 1 cut(s) 180
Bsh1236I CGCG 3 cut(s) 215, 375, 402
BshNI GGYRCC 1 cut(s) 145
BsiHKCI CYCGRG 1 cut(s) 362
BsiSI CCGG 1 cut(s) 210
BslFI GGGAC 1 cut(s) 70
BsmAI GTCTC 2 cut(s) 242, 424
BsmFI GGGAC 1 cut(s) 70
BsoBI CYCGRG 1 cut(s) 362
Bsp143I GATC 1 cut(s) 303
Bsp68I TCGCGA 1 cut(s) 402
BspACI CCGC 3 cut(s) 128, 215, 373
BspFNI CGCG 3 cut(s) 215, 375, 402
BspLI GGNNCC 2 cut(s) 147, 371
BspMAI CTGCAG 1 cut(s) 198
BspMI ACCTGC 1 cut(s) 247
BspT107I GGYRCC 1 cut(s) 145
BsrFI RCCGGY 1 cut(s) 209
BssAI RCCGGY 1 cut(s) 209
BssECI CCNNGG 1 cut(s) 149
BssMI GATC 1 cut(s) 303
BssNI GRCGYC 1 cut(s) 146
Bst2UI CCWGG 1 cut(s) 125
Bst4CI ACNGT 2 cut(s) 310, 418
Bst6I CTCTTC 1 cut(s) 427
BstACI GRCGYC 1 cut(s) 146
BstC8I GCNNGC 2 cut(s) 144, 211
BstF5I GGATG 1 cut(s) 160
BstFNI CGCG 3 cut(s) 215, 375, 402
BstH2I RGCGCY 1 cut(s) 149
BstHHI GCGC 3 cut(s) 148, 215, 361
BstKTI GATC 1 cut(s) 306
BstMAI GTCTC 2 cut(s) 242, 424
BstMBI GATC 1 cut(s) 303
BstNI CCWGG 1 cut(s) 125
BstSCI CCNGG 1 cut(s) 123
BstSFI CTRYAG 1 cut(s) 194
BstUI CGCG 3 cut(s) 215, 375, 402
BstV1I GCAGC 1 cut(s) 180
BstV2I GAAGAC 1 cut(s) 104
BtrI CACGTC 1 cut(s) 187
BtsCI GGATG 1 cut(s) 160
BtuMI TCGCGA 1 cut(s) 402
BveI ACCTGC 1 cut(s) 247
Cac8I GCNNGC 2 cut(s) 144, 211
CfoI GCGC 3 cut(s) 148, 215, 361
Cfr10I RCCGGY 1 cut(s) 209
Csp6I GTAC 2 cut(s) 112, 271
CviJI RGCY 6 cut(s) 34, 142, 193, 209, 300, 331
CviKI_1 RGCY 6 cut(s) 34, 142, 193, 209, 300, 331
CviQI GTAC 2 cut(s) 112, 271
DinI GGCGCC 1 cut(s) 147
DpnI GATC 1 cut(s) 305
DpnII GATC 1 cut(s) 303
Eam1104I CTCTTC 1 cut(s) 427
EarI CTCTTC 1 cut(s) 427
Eco88I CYCGRG 1 cut(s) 362
EcoRI GAATTC 1 cut(s) 77
EcoRII CCWGG 1 cut(s) 123
EgeI GGCGCC 1 cut(s) 147
EheI GGCGCC 1 cut(s) 147
FaiI YATR 1 cut(s) 84
FaqI GGGAC 1 cut(s) 70
FauI CCCGC 1 cut(s) 121
FbaI TGATCA 1 cut(s) 303
FblI GTMKAC 1 cut(s) 261
Fnu4HI GCNGC 1 cut(s) 194
FokI GGATG 1 cut(s) 167
Fsp4HI GCNGC 1 cut(s) 194
GlaI GCGC 3 cut(s) 147, 214, 360
GluI GCNGC 1 cut(s) 194
HaeII RGCGCY 1 cut(s) 149
HapII CCGG 1 cut(s) 210
HhaI GCGC 3 cut(s) 148, 215, 361
Hin1I GRCGYC 1 cut(s) 146
Hin6I GCGC 3 cut(s) 146, 213, 359
HinP1I GCGC 3 cut(s) 146, 213, 359
HinfI GANTC 3 cut(s) 132, 160, 404
HpaII CCGG 1 cut(s) 210
Hpy166II GTNNAC 2 cut(s) 262, 349
Hpy188I TCNGA 4 cut(s) 137, 165, 184, 232
Hpy188III TCNNGA 3 cut(s) 401, 412, 429
Hpy8I GTNNAC 2 cut(s) 262, 349
HpyAV CCTTC 8 cut(s) 11, 19, 37, 46, 100, 235, 407, 418
HpyCH4III ACNGT 2 cut(s) 310, 418
HpyCH4IV ACGT 1 cut(s) 186
HpyCH4V TGCA 1 cut(s) 196
HpySE526I ACGT 1 cut(s) 186
Hsp92I GRCGYC 1 cut(s) 146
HspAI GCGC 3 cut(s) 146, 213, 359
KasI GGCGCC 1 cut(s) 145
KroI GCCGGC 1 cut(s) 209
KroNI GCCGGC 1 cut(s) 211
Ksp22I TGATCA 1 cut(s) 303
Kzo9I GATC 1 cut(s) 303
LmnI GCTCC 2 cut(s) 190, 323
Lsp1109I GCAGC 1 cut(s) 180
MaeII ACGT 1 cut(s) 186
MaeIII GTNAC 1 cut(s) 310
MalI GATC 1 cut(s) 305
MboI GATC 1 cut(s) 303
MboII GAAGA 5 cut(s) 103, 106, 109, 414, 417
MluCI AATT 1 cut(s) 77
Mly113I GGCGCC 1 cut(s) 146
MlyI GAGTC 1 cut(s) 398
MmeI TCCRAC 3 cut(s) 162, 210, 268
MnlI CCTC 5 cut(s) 7, 24, 144, 226, 231
MroNI GCCGGC 1 cut(s) 209
MseI TTAA 1 cut(s) 389
MspA1I CMGCKG 1 cut(s) 142
MspI CCGG 1 cut(s) 210
MspR9I CCNGG 1 cut(s) 125
MvaI CCWGG 1 cut(s) 125
MvnI CGCG 3 cut(s) 215, 375, 402
NaeI GCCGGC 1 cut(s) 211
NarI GGCGCC 1 cut(s) 146
NdeII GATC 1 cut(s) 303
NgoMIV GCCGGC 1 cut(s) 209
NlaIV GGNNCC 2 cut(s) 147, 371
NmeAIII GCCGAG 1 cut(s) 174
NmuCI GTSAC 1 cut(s) 310
NruI TCGCGA 1 cut(s) 402
PcsI WCGNNNNNNNCGW 1 cut(s) 342
PdiI GCCGGC 1 cut(s) 211
PfeI GAWTC 2 cut(s) 132, 160
PkrI GCNGC 1 cut(s) 195
PleI GAGTC 1 cut(s) 398
PluTI GGCGCC 1 cut(s) 149
PpsI GAGTC 1 cut(s) 398
Psp6I CCWGG 1 cut(s) 123
PspGI CCWGG 1 cut(s) 123
PspN4I GGNNCC 2 cut(s) 147, 371
PsrI GAACNNNNNNTAC 2 cut(s) 317, 349
PstI CTGCAG 1 cut(s) 198
PvuII CAGCTG 1 cut(s) 142
RruI TCGCGA 1 cut(s) 402
RsaI GTAC 2 cut(s) 113, 272
RsaNI GTAC 2 cut(s) 112, 271
SaqAI TTAA 1 cut(s) 389
SatI GCNGC 1 cut(s) 194
Sau3AI GATC 1 cut(s) 303
SchI GAGTC 1 cut(s) 398
ScrFI CCNGG 1 cut(s) 125
SetI ASST 9 cut(s) 48, 117, 144, 174, 189, 195, 261, 333, 399
SfcI CTRYAG 1 cut(s) 194
SfoI GGCGCC 1 cut(s) 147
Sse9I AATT 1 cut(s) 77
SsiI CCGC 3 cut(s) 128, 215, 373
SspDI GGCGCC 1 cut(s) 145
StyD4I CCNGG 1 cut(s) 123
TaaI ACNGT 2 cut(s) 310, 418
TaiI ACGT 1 cut(s) 189
TaqI TCGA 1 cut(s) 41
TasI AATT 1 cut(s) 77
TfiI GAWTC 2 cut(s) 132, 160
Tru1I TTAA 1 cut(s) 389
Tru9I TTAA 1 cut(s) 389
TseFI GTSAC 1 cut(s) 310
TseI GCWGC 1 cut(s) 193
Tsp45I GTSAC 1 cut(s) 310
TspGWI ACGGA 2 cut(s) 78, 116
XapI RAATTY 1 cut(s) 77
XmiI GTMKAC 1 cut(s) 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.