Rh3BG212900

Thylakoid lumenal 19 kDa protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0005710
Physical Location & Seq
Forward (+)
19254776 .. 19255714
939 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG212900.1

Sequence Viewer

Length: 723 bp
ATGGCTACCATGTTTTCCACCACGAACAGCAACACCCCAAACACCACCATCCCATCTCCCAAACCACCTCAAACTCCACCACCGTCCAGAACAACCCACCTCCCCATTCCACCCTCCAAGCCACTCTTAACTACCTTAACCGCCACCGCCGCAGCTGCCGCCATCCTGACTGCCACTCCACCCTCATTAGCAGACTCCCCAACTTACCAAATTTACTACGGCACCGCCGCCAGCGCGGCCAACTACGGCGGATACGGTGGCAACTCCGACAAGAAGACTTCCGCCGAGTATGTCTATGACGTCCCAGACGGTTGGAAAGAGCGTTTAGTATCAAAAGTCGAAAAAGGTACAAATGGAACTGACAGTGAATTCTACAACCCGAAGAAGAAGACGGAGAAAGAGTACCTGACATACCTCGGTGGGTTTCGGCAGCTAGCTCCCAAGGACGTGGTGCTGAACAATCTAGCTCTGTCAGACGTGAGCTTGCAGGACTTGATAGCCAGTGCCGATGAGGTGACGTCGGAGGAGAAGAAAGACGACAAGGGACAGGTTTACTATGTGTATGAGATCAATGGGGTTGCTGCACATAGTTTGATTTCGGTCACTTGTGCTAACAACAAGCTTTATGCTCATTTTGTCAATGCGCCTACCCCCGAGTGGAACCGCGACAATGATATGTTGAAGCATGTTCATGAGTCTTTCAAAACTGTTGGATCCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PsbP

Protein Analysis

240

Amino Acids

26.07

Weight (kDa)

5.96

Isoelectric Point (pI)

30.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbP PF01789 96 - 235 7.6e-08 PsbP
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 303, 521
AccB1I GGYRCC 1 cut(s) 221
AccII CGCG 2 cut(s) 236, 666
AclWI GGATC 2 cut(s) 708, 721
AcoI YGGCCR 1 cut(s) 237
AcsI RAATTY 2 cut(s) 210, 368
AcyI GRCGYC 2 cut(s) 300, 518
AfaI GTAC 2 cut(s) 349, 404
AfiI CCNNNNNNNGG 1 cut(s) 657
AgsI TTSAA 2 cut(s) 682, 703
AjiI CACGTC 2 cut(s) 448, 478
AluBI AGCT 6 cut(s) 155, 433, 437, 467, 483, 622
AluI AGCT 6 cut(s) 155, 433, 437, 467, 483, 622
AlwI GGATC 2 cut(s) 708, 721
Ama87I CYCGRG 1 cut(s) 653
AoxI GGCC 1 cut(s) 237
ApeKI GCWGC 4 cut(s) 152, 155, 430, 581
ApoI RAATTY 2 cut(s) 210, 368
AspLEI GCGC 2 cut(s) 236, 646
AsuHPI GGTGA 1 cut(s) 526
AsuNHI GCTAGC 1 cut(s) 433
AvaI CYCGRG 1 cut(s) 653
BamHI GGATCC 1 cut(s) 713
BanI GGYRCC 1 cut(s) 221
BbsI GAAGAC 2 cut(s) 281, 395
BbvI GCAGC 4 cut(s) 142, 164, 442, 568
BccI CCATC 3 cut(s) 56, 61, 170
BceAI ACGGC 2 cut(s) 235, 262
BciVI GTATCC 1 cut(s) 245
BfaI CTAG 2 cut(s) 434, 464
BfuI GTATCC 1 cut(s) 245
BglI GCCNNNNNGGC 1 cut(s) 236
BisI GCNGC 8 cut(s) 150, 153, 156, 159, 228, 237, 431, 582
BlsI GCNGC 8 cut(s) 151, 154, 157, 160, 229, 238, 432, 583
BmeT110I CYCGRG 1 cut(s) 653
BmgBI CACGTC 2 cut(s) 448, 478
BmiI GGNNCC 3 cut(s) 223, 662, 715
BmtI GCTAGC 1 cut(s) 437
BpiI GAAGAC 2 cut(s) 281, 395
BsaHI GRCGYC 2 cut(s) 300, 518
BsaJI CCNNGG 2 cut(s) 415, 441
BsaXI ACNNNNNCTCC 4 cut(s) 160, 190, 386, 416
Bsc4I CCNNNNNNNGG 1 cut(s) 657
Bse1I ACTGG 1 cut(s) 501
BseDI CCNNGG 2 cut(s) 415, 441
BseGI GGATG 2 cut(s) 48, 162
BseLI CCNNNNNNNGG 1 cut(s) 657
BseNI ACTGG 1 cut(s) 501
BseRI GAGGAG 1 cut(s) 539
BseXI GCAGC 4 cut(s) 142, 164, 442, 568
BsgI GTGCAG 1 cut(s) 567
Bsh1236I CGCG 2 cut(s) 236, 666
BshFI GGCC 1 cut(s) 239
BshNI GGYRCC 1 cut(s) 221
BsiHKCI CYCGRG 1 cut(s) 653
BslFI GGGAC 2 cut(s) 287, 558
BslI CCNNNNNNNGG 1 cut(s) 657
BsmFI GGGAC 2 cut(s) 287, 558
BsnI GGCC 1 cut(s) 239
BsoBI CYCGRG 1 cut(s) 653
Bsp143I GATC 2 cut(s) 567, 713
BspANI GGCC 1 cut(s) 239
BspFNI CGCG 2 cut(s) 236, 666
BspHI TCATGA 1 cut(s) 691
BspLI GGNNCC 3 cut(s) 223, 662, 715
BspOI GCTAGC 1 cut(s) 437
BspPI GGATC 2 cut(s) 708, 721
BspT107I GGYRCC 1 cut(s) 221
BsrI ACTGG 1 cut(s) 501
BssECI CCNNGG 2 cut(s) 415, 441
BssMI GATC 2 cut(s) 567, 713
BssNI GRCGYC 2 cut(s) 300, 518
BssT1I CCWWGG 1 cut(s) 441
Bst4CI ACNGT 5 cut(s) 84, 257, 311, 365, 709
BstACI GRCGYC 2 cut(s) 300, 518
BstC8I GCNNGC 3 cut(s) 232, 435, 485
BstF5I GGATG 2 cut(s) 48, 162
BstFNI CGCG 2 cut(s) 236, 666
BstHHI GCGC 2 cut(s) 236, 646
BstKTI GATC 2 cut(s) 570, 716
BstMBI GATC 2 cut(s) 567, 713
BstMWI GCNNNNNNNGC 5 cut(s) 149, 155, 158, 233, 236
BstNSI RCATGY 1 cut(s) 689
BstUI CGCG 2 cut(s) 236, 666
BstV1I GCAGC 4 cut(s) 142, 164, 442, 568
BstV2I GAAGAC 2 cut(s) 281, 395
BstX2I RGATCY 1 cut(s) 713
BstXI CCANNNNNNTGG 2 cut(s) 312, 448
BstYI RGATCY 1 cut(s) 713
BsuI GTATCC 1 cut(s) 245
BsuRI GGCC 1 cut(s) 239
BtrI CACGTC 2 cut(s) 448, 478
BtsCI GGATG 2 cut(s) 48, 162
BtsIMutI CAGTG 2 cut(s) 370, 508
Cac8I GCNNGC 3 cut(s) 232, 435, 485
CciI TCATGA 1 cut(s) 691
CfoI GCGC 2 cut(s) 236, 646
Csp6I GTAC 2 cut(s) 348, 403
CviAII CATG 3 cut(s) 10, 686, 692
CviQI GTAC 2 cut(s) 348, 403
DpnI GATC 2 cut(s) 569, 715
DpnII GATC 2 cut(s) 567, 713
EaeI YGGCCR 1 cut(s) 237
EciI GGCGGA 2 cut(s) 264, 271
Eco130I CCWWGG 1 cut(s) 441
Eco88I CYCGRG 1 cut(s) 653
EcoRI GAATTC 1 cut(s) 368
EcoT14I CCWWGG 1 cut(s) 441
ErhI CCWWGG 1 cut(s) 441
FaeI CATG 3 cut(s) 13, 689, 695
FalI AAGNNNNNCTT 2 cut(s) 110, 142
FaqI GGGAC 2 cut(s) 287, 558
FatI CATG 3 cut(s) 9, 685, 691
Fnu4HI GCNGC 8 cut(s) 150, 153, 156, 159, 228, 237, 431, 582
FokI GGATG 2 cut(s) 35, 149
Fsp4HI GCNGC 8 cut(s) 150, 153, 156, 159, 228, 237, 431, 582
FspBI CTAG 2 cut(s) 434, 464
GlaI GCGC 2 cut(s) 235, 645
GluI GCNGC 8 cut(s) 150, 153, 156, 159, 228, 237, 431, 582
HaeIII GGCC 1 cut(s) 239
HhaI GCGC 2 cut(s) 236, 646
Hin1I GRCGYC 2 cut(s) 300, 518
Hin1II CATG 3 cut(s) 13, 689, 695
Hin6I GCGC 2 cut(s) 234, 644
HinP1I GCGC 2 cut(s) 234, 644
HindIII AAGCTT 1 cut(s) 620
HinfI GANTC 2 cut(s) 194, 695
HphI GGTGA 1 cut(s) 526
Hpy166II GTNNAC 1 cut(s) 553
Hpy188I TCNGA 3 cut(s) 268, 475, 523
Hpy188III TCNNGA 3 cut(s) 87, 166, 692
Hpy8I GTNNAC 1 cut(s) 553
Hpy99I CGWCG 1 cut(s) 523
HpyCH4III ACNGT 5 cut(s) 84, 257, 311, 365, 709
HpyCH4IV ACGT 4 cut(s) 300, 447, 477, 518
HpyCH4V TGCA 2 cut(s) 487, 584
HpyF10VI GCNNNNNNNGC 5 cut(s) 149, 155, 158, 233, 236
HpySE526I ACGT 4 cut(s) 300, 447, 477, 518
Hsp92I GRCGYC 2 cut(s) 300, 518
Hsp92II CATG 3 cut(s) 13, 689, 695
HspAI GCGC 2 cut(s) 234, 644
Kzo9I GATC 2 cut(s) 567, 713
LmnI GCTCC 1 cut(s) 442
LpnPI CCDG 8 cut(s) 100, 179, 244, 318, 419, 473, 514, 533
Lsp1109I GCAGC 4 cut(s) 142, 164, 442, 568
MaeI CTAG 2 cut(s) 434, 464
MaeII ACGT 4 cut(s) 300, 447, 477, 518
MaeIII GTNAC 2 cut(s) 514, 601
MalI GATC 2 cut(s) 569, 715
MboI GATC 2 cut(s) 567, 713
MboII GAAGA 5 cut(s) 286, 394, 397, 400, 541
MflI RGATCY 1 cut(s) 713
MluCI AATT 2 cut(s) 210, 368
MlyI GAGTC 2 cut(s) 188, 704
MmeI TCCRAC 4 cut(s) 291, 293, 501, 691
MnlI CCTC 7 cut(s) 78, 110, 124, 193, 425, 505, 517
MseI TTAA 2 cut(s) 128, 137
MslI CAYNNNNRTG 1 cut(s) 690
MspA1I CMGCKG 1 cut(s) 155
MvnI CGCG 2 cut(s) 236, 666
MwoI GCNNNNNNNGC 5 cut(s) 149, 155, 158, 233, 236
NdeII GATC 2 cut(s) 567, 713
NheI GCTAGC 1 cut(s) 433
NlaIII CATG 3 cut(s) 13, 689, 695
NlaIV GGNNCC 3 cut(s) 223, 662, 715
NmeAIII GCCGAG 1 cut(s) 310
NmuCI GTSAC 2 cut(s) 514, 601
NspI RCATGY 1 cut(s) 689
PagI TCATGA 1 cut(s) 691
PkrI GCNGC 8 cut(s) 151, 154, 157, 160, 229, 238, 432, 583
PleI GAGTC 2 cut(s) 188, 703
PpsI GAGTC 2 cut(s) 188, 703
PspN4I GGNNCC 3 cut(s) 223, 662, 715
PsuI RGATCY 1 cut(s) 713
PvuII CAGCTG 1 cut(s) 155
RsaI GTAC 2 cut(s) 349, 404
RsaNI GTAC 2 cut(s) 348, 403
RseI CAYNNNNRTG 1 cut(s) 690
SaqAI TTAA 2 cut(s) 128, 137
SatI GCNGC 8 cut(s) 150, 153, 156, 159, 228, 237, 431, 582
Sau3AI GATC 2 cut(s) 567, 713
SchI GAGTC 2 cut(s) 188, 704
SmiMI CAYNNNNRTG 1 cut(s) 690
Sse9I AATT 2 cut(s) 210, 368
SspMI CTAG 2 cut(s) 434, 464
StyI CCWWGG 1 cut(s) 441
TaaI ACNGT 5 cut(s) 84, 257, 311, 365, 709
TaiI ACGT 4 cut(s) 303, 450, 480, 521
TaqI TCGA 1 cut(s) 339
TaqII GACCGA 1 cut(s) 589
TasI AATT 2 cut(s) 210, 368
TauI GCSGC 4 cut(s) 152, 161, 230, 239
Tru1I TTAA 2 cut(s) 128, 137
Tru9I TTAA 2 cut(s) 128, 137
TscAI CASTG 2 cut(s) 370, 508
TseFI GTSAC 2 cut(s) 514, 601
TseI GCWGC 4 cut(s) 152, 155, 430, 581
Tsp45I GTSAC 2 cut(s) 514, 601
TspDTI ATGAA 1 cut(s) 680
TspGWI ACGGA 1 cut(s) 407
TspRI CASTG 2 cut(s) 370, 508
XapI RAATTY 2 cut(s) 210, 368
XceI RCATGY 1 cut(s) 689
XspI CTAG 2 cut(s) 434, 464
ZraI GACGTC 2 cut(s) 301, 519
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.