Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0005710

Physical Location & Seq

Genomic Coordinates Reverse (-)

36929039 .. 36929920

Gene Structure 882 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1313800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGCTACCATGTTCTCACCCTCAACCTTCTCCTCCACCACCACCAACAACATCACATCTCCAAAACCACCTCAAACTCCCCTACCGCCCAAATCCCACATCCCCATCCCGCCCTCTAAACCACTCATAACTACCTTAACCACCACACTAACTGTCACCGCCGCTGCAGCTGCCATCCTAACTGCCTCTCCACCCTCGTTAGCAGACTCCACAGCAGAAACAACTTACCAAATCTTCTACGGCACTGTTGCCAGCGCGGCCAACTATGGCGGCTACGGTGGCAACTCCGACAAGAAAGCCTCCGCCGAGTATGTCTATGACGTGCCAGATGGATGGAAAGAGCGTTTGGTCTCAAAAGTCGAAAAGGGTACAAATGAGACTGATAGCGAATTTTACAACCCGAAGAAGAAGTCAGAAAAAGAGTACTTGACATTCCTTTCCGGGTTTAATCAACTAGCACCGAAGGATGCGGTGCTGAACAATTTGGCTCTGTCAGATGTGAACTTGCAGGACTTGCTAGCAAGCGTGGATAATGTGACATCGGAGGAGAGGAATGACAAGAAGAGACAGGTTTACTATGTGTATGAGATCGATGGAGTTGCTGCTCACAGTTTGATTTCAGTGACTTGTGCTCGGAACAAGCTGTATGCACATTTTGTCAATGCGCCAATGACAGAGTGGAACCGTGACCATGACTTGTTGCAGCATGTTCATGAGTCTTTCAAGACTACTGGTTCTTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PsbP

Protein Analysis

248

Amino Acids

27.04

Weight (kDa)

5.87

Isoelectric Point (pI)

39.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005710)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63540
fragaria_vesca	FvH4_7g00900
malus_domestica	MD02G1313800.v1.1 MD07G1008600.v1.1
prunus_persica	Prupe.2G012000_v2.0.a1
pyrus_communis	pycom02g26310 pycom07g00740
rosa_chinensis	RchiOBHm_Chr1g0315791 RchiOBHm_Chr3g0473601
rosa_laevigata	RLG00000024001 RLG00000030732
rosa_multiflora	Rmu_co8131984.1_g000001 Rmu_sc0003069.1_g000013 Rmu_sc0009816.1_g000005 Rmu_sc0033628.1_g000002 Rmu_ssc0000154.1_g000002
rosa_roxburghii	Rroxscaffold_6G00408030
rosa_rugosa	Rorug01G0005600 Rorug03G0133200
rosa_samantha	Rh1AG016500 Rh1BG008900 Rh1CG013800 Rh3AG184900 Rh3BG212900 Rh3CG209400 Rh3DG208700
rosa_wichuraiana	Rw1G000970 Rw3G015960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	257
AciI	CCGC	8 cut(s)	86, 110, 159, 162, 257, 270, 303, 470
AcoI	YGGCCR	1 cut(s)	258
AcsI	RAATTY	1 cut(s)	389
AfaI	GTAC	2 cut(s)	370, 425
AgsI	TTSAA	1 cut(s)	724
AjiI	CACGTC	1 cut(s)	322
AjuI	GAANNNNNNNTTGG	2 cut(s)	329, 361
AluBI	AGCT	2 cut(s)	170, 643
AluI	AGCT	2 cut(s)	170, 643
Alw21I	GWGCWC	1 cut(s)	634
Alw26I	GTCTC	3 cut(s)	355, 371, 559
AoxI	GGCC	1 cut(s)	258
ApeKI	GCWGC	5 cut(s)	164, 167, 170, 602, 703
ApoI	RAATTY	1 cut(s)	389
ArsI	GACNNNNNNTTYG	2 cut(s)	395, 427
AspLEI	GCGC	2 cut(s)	257, 667
AsuC2I	CCSGG	1 cut(s)	442
AsuHPI	GGTGA	2 cut(s)	9, 148
AsuNHI	GCTAGC	1 cut(s)	517
Bbv12I	GWGCWC	1 cut(s)	634
BbvI	GCAGC	5 cut(s)	151, 157, 179, 589, 715
BccI	CCATC	5 cut(s)	113, 182, 323, 327, 587
BceAI	ACGGC	1 cut(s)	256
BcgI	CGANNNNNNTGC	2 cut(s)	581, 615
BcnI	CCSGG	1 cut(s)	442
BcoDI	GTCTC	3 cut(s)	355, 371, 559
BfaI	CTAG	2 cut(s)	455, 518
BfmI	CTRYAG	1 cut(s)	165
BglI	GCCNNNNNGGC	1 cut(s)	257
BisI	GCNGC	8 cut(s)	162, 165, 168, 171, 258, 271, 603, 704
BlsI	GCNGC	8 cut(s)	163, 166, 169, 172, 259, 272, 604, 705
BmcAI	AGTACT	1 cut(s)	425
Bme1390I	CCNGG	1 cut(s)	442
BmgBI	CACGTC	1 cut(s)	322
BmiI	GGNNCC	1 cut(s)	683
BmrFI	CCNGG	1 cut(s)	442
BmsI	GCATC	1 cut(s)	457
BmtI	GCTAGC	1 cut(s)	521
BpuMI	CCSGG	1 cut(s)	442
Bsa29I	ATCGAT	1 cut(s)	591
BsaI	GGTCTC	1 cut(s)	355
BsaXI	ACNNNNNCTCC	2 cut(s)	172, 202
Bse1I	ACTGG	1 cut(s)	736
BseCI	ATCGAT	1 cut(s)	591
BseGI	GGATG	5 cut(s)	99, 105, 174, 338, 472
BseNI	ACTGG	1 cut(s)	736
BseRI	GAGGAG	2 cut(s)	22, 560
BseXI	GCAGC	5 cut(s)	151, 157, 179, 589, 715
Bsh1236I	CGCG	1 cut(s)	257
BshFI	GGCC	1 cut(s)	260
BshVI	ATCGAT	1 cut(s)	591
BsiHKAI	GWGCWC	1 cut(s)	634
BsiSI	CCGG	1 cut(s)	441
BsmAI	GTCTC	3 cut(s)	355, 371, 559
BsnI	GGCC	1 cut(s)	260
Bso31I	GGTCTC	1 cut(s)	355
Bsp1286I	GDGCHC	1 cut(s)	634
Bsp143I	GATC	1 cut(s)	588
BspACI	CCGC	8 cut(s)	86, 110, 159, 162, 257, 270, 303, 470
BspANI	GGCC	1 cut(s)	260
BspDI	ATCGAT	1 cut(s)	591
BspFNI	CGCG	1 cut(s)	257
BspHI	TCATGA	1 cut(s)	712
BspLI	GGNNCC	1 cut(s)	683
BspMAI	CTGCAG	1 cut(s)	169
BspOI	GCTAGC	1 cut(s)	521
BspTNI	GGTCTC	1 cut(s)	355
BsrI	ACTGG	1 cut(s)	736
BssMI	GATC	1 cut(s)	588
Bst4CI	ACNGT	5 cut(s)	154, 247, 278, 611, 686
Bst6I	CTCTTC	1 cut(s)	557
BstAPI	GCANNNNNTGC	1 cut(s)	514
BstC8I	GCNNGC	3 cut(s)	253, 519, 523
BstF5I	GGATG	5 cut(s)	99, 105, 174, 338, 472
BstFNI	CGCG	1 cut(s)	257
BstHHI	GCGC	2 cut(s)	257, 667
BstKTI	GATC	1 cut(s)	591
BstMAI	GTCTC	3 cut(s)	355, 371, 559
BstMBI	GATC	1 cut(s)	588
BstMWI	GCNNNNNNNGC	5 cut(s)	167, 170, 257, 279, 514
BstNSI	RCATGY	1 cut(s)	710
BstSCI	CCNGG	1 cut(s)	440
BstSFI	CTRYAG	1 cut(s)	165
BstUI	CGCG	1 cut(s)	257
BstV1I	GCAGC	5 cut(s)	151, 157, 179, 589, 715
BstXI	CCANNNNNNTGG	1 cut(s)	333
Bsu15I	ATCGAT	1 cut(s)	591
BsuRI	GGCC	1 cut(s)	260
BsuTUI	ATCGAT	1 cut(s)	591
BtrI	CACGTC	1 cut(s)	322
BtsCI	GGATG	5 cut(s)	99, 105, 174, 338, 472
BtsIMutI	CAGTG	2 cut(s)	243, 627
Cac8I	GCNNGC	3 cut(s)	253, 519, 523
CciI	TCATGA	1 cut(s)	712
CfoI	GCGC	2 cut(s)	257, 667
ClaI	ATCGAT	1 cut(s)	591
Csp6I	GTAC	2 cut(s)	369, 424
CviAII	CATG	4 cut(s)	10, 692, 707, 713
CviJI	RGCY	7 cut(s)	5, 170, 260, 273, 299, 488, 643
CviKI_1	RGCY	7 cut(s)	5, 170, 260, 273, 299, 488, 643
CviQI	GTAC	2 cut(s)	369, 424
DpnI	GATC	1 cut(s)	590
DpnII	GATC	1 cut(s)	588
EaeI	YGGCCR	1 cut(s)	258
Eam1104I	CTCTTC	1 cut(s)	557
EarI	CTCTTC	1 cut(s)	557
EciI	GGCGGA	1 cut(s)	292
Eco31I	GGTCTC	1 cut(s)	355
FaeI	CATG	4 cut(s)	13, 695, 710, 716
FatI	CATG	4 cut(s)	9, 691, 706, 712
FauI	CCCGC	1 cut(s)	117
Fnu4HI	GCNGC	8 cut(s)	162, 165, 168, 171, 258, 271, 603, 704
FokI	GGATG	5 cut(s)	86, 92, 161, 345, 479
Fsp4HI	GCNGC	8 cut(s)	162, 165, 168, 171, 258, 271, 603, 704
FspBI	CTAG	2 cut(s)	455, 518
GlaI	GCGC	2 cut(s)	256, 666
GluI	GCNGC	8 cut(s)	162, 165, 168, 171, 258, 271, 603, 704
HaeIII	GGCC	1 cut(s)	260
HapII	CCGG	1 cut(s)	441
HhaI	GCGC	2 cut(s)	257, 667
Hin1II	CATG	4 cut(s)	13, 695, 710, 716
Hin6I	GCGC	2 cut(s)	255, 665
HinP1I	GCGC	2 cut(s)	255, 665
HinfI	GANTC	2 cut(s)	206, 716
HpaII	CCGG	1 cut(s)	441
HphI	GGTGA	2 cut(s)	9, 148
Hpy166II	GTNNAC	2 cut(s)	502, 574
Hpy188I	TCNGA	5 cut(s)	289, 415, 496, 544, 636
Hpy188III	TCNNGA	2 cut(s)	713, 724
Hpy8I	GTNNAC	2 cut(s)	502, 574
HpyAV	CCTTC	2 cut(s)	37, 457
HpyCH4III	ACNGT	5 cut(s)	154, 247, 278, 611, 686
HpyCH4IV	ACGT	1 cut(s)	321
HpyCH4V	TGCA	4 cut(s)	167, 508, 650, 703
HpyF10VI	GCNNNNNNNGC	5 cut(s)	167, 170, 257, 279, 514
HpySE526I	ACGT	1 cut(s)	321
Hsp92II	CATG	4 cut(s)	13, 695, 710, 716
HspAI	GCGC	2 cut(s)	255, 665
Kzo9I	GATC	1 cut(s)	588
LpnPI	CCDG	6 cut(s)	265, 339, 454, 494, 554, 717
Lsp1109I	GCAGC	5 cut(s)	151, 157, 179, 589, 715
LweI	GCATC	1 cut(s)	457
MaeI	CTAG	2 cut(s)	455, 518
MaeII	ACGT	1 cut(s)	321
MaeIII	GTNAC	4 cut(s)	154, 535, 622, 686
MalI	GATC	1 cut(s)	590
MboI	GATC	1 cut(s)	588
MboII	GAAGA	4 cut(s)	226, 415, 418, 574
MhlI	GDGCHC	1 cut(s)	634
MluCI	AATT	2 cut(s)	389, 481
MlyI	GAGTC	2 cut(s)	200, 725
MmeI	TCCRAC	1 cut(s)	312
MnlI	CCTC	9 cut(s)	31, 43, 81, 124, 196, 205, 310, 538, 543
MseI	TTAA	2 cut(s)	137, 447
MslI	CAYNNNNRTG	1 cut(s)	711
MspA1I	CMGCKG	2 cut(s)	164, 170
MspI	CCGG	1 cut(s)	441
MspR9I	CCNGG	1 cut(s)	442
MvnI	CGCG	1 cut(s)	257
MwoI	GCNNNNNNNGC	5 cut(s)	167, 170, 257, 279, 514
NciI	CCSGG	1 cut(s)	442
NdeII	GATC	1 cut(s)	588
NheI	GCTAGC	1 cut(s)	517
NlaIII	CATG	4 cut(s)	13, 695, 710, 716
NlaIV	GGNNCC	1 cut(s)	683
NmeAIII	GCCGAG	1 cut(s)	331
NmuCI	GTSAC	4 cut(s)	154, 535, 622, 686
NspI	RCATGY	1 cut(s)	710
PagI	TCATGA	1 cut(s)	712
PkrI	GCNGC	8 cut(s)	163, 166, 169, 172, 259, 272, 604, 705
PleI	GAGTC	2 cut(s)	200, 724
PpsI	GAGTC	2 cut(s)	200, 724
PspN4I	GGNNCC	1 cut(s)	683
PstI	CTGCAG	1 cut(s)	169
PvuII	CAGCTG	1 cut(s)	170
RsaI	GTAC	2 cut(s)	370, 425
RsaNI	GTAC	2 cut(s)	369, 424
RseI	CAYNNNNRTG	1 cut(s)	711
SaqAI	TTAA	2 cut(s)	137, 447
SatI	GCNGC	8 cut(s)	162, 165, 168, 171, 258, 271, 603, 704
Sau3AI	GATC	1 cut(s)	588
ScaI	AGTACT	1 cut(s)	425
SchI	GAGTC	2 cut(s)	200, 725
ScrFI	CCNGG	1 cut(s)	442
SduI	GDGCHC	1 cut(s)	634
SetI	ASST	7 cut(s)	29, 73, 137, 172, 324, 573, 645
SfaNI	GCATC	1 cut(s)	457
SfcI	CTRYAG	1 cut(s)	165
SmiMI	CAYNNNNRTG	1 cut(s)	711
Sse9I	AATT	2 cut(s)	389, 481
SsiI	CCGC	8 cut(s)	86, 110, 159, 162, 257, 270, 303, 470
SspMI	CTAG	2 cut(s)	455, 518
StyD4I	CCNGG	1 cut(s)	440
TaaI	ACNGT	5 cut(s)	154, 247, 278, 611, 686
TaiI	ACGT	1 cut(s)	324
TaqI	TCGA	2 cut(s)	360, 591
TasI	AATT	2 cut(s)	389, 481
TatI	WGTACW	1 cut(s)	423
TauI	GCSGC	3 cut(s)	164, 260, 273
Tru1I	TTAA	2 cut(s)	137, 447
Tru9I	TTAA	2 cut(s)	137, 447
TscAI	CASTG	2 cut(s)	250, 627
TseFI	GTSAC	4 cut(s)	154, 535, 622, 686
TseI	GCWGC	5 cut(s)	164, 167, 170, 602, 703
Tsp45I	GTSAC	4 cut(s)	154, 535, 622, 686
TspDTI	ATGAA	1 cut(s)	701
TspRI	CASTG	2 cut(s)	250, 627
XapI	RAATTY	1 cut(s)	389
XceI	RCATGY	1 cut(s)	710
XcmI	CCANNNNNNNNNTGG	1 cut(s)	675
XspI	CTAG	2 cut(s)	455, 518
ZrmI	AGTACT	1 cut(s)	425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.