Rh3DG208700

Thylakoid lumenal 19 kDa protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0005710
Physical Location & Seq
Forward (+)
19322221 .. 19323162
942 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG208700.1

Sequence Viewer

Length: 726 bp
ATGGCTACCATGTTCTCCACCACCAACGCCAACACCCCAAACACCACCATCCCATCTCCCAAACCACCTCAAACTCCACCACCGTCCAGAACAACCCACCTCACCATTCCACCCTCCAAGCAGCCACTCTTAACTACCTTAACCGCCACCGCCGCAGCTGCCGCCATCCTAACTGCCACTCCACCCTCATTAGCAGACTCCCCAACTTACCAAATTTACTACGGCACCGCCGCCAGCGCGGCCAACTACGGCGGATACGGTGGCAACTCCGACAAGAAGACTTCCGCCGAGTATGTCTATGACGTCCCAGACGGTTGGAAAGAGCGTTTAGTATCAAAAGTCGAAAAAGGTACAAATGGAACTGACAGTGAATTCTACAACCCGAAGAAGAAGACGGAGAAAGAGTACCTGACATACCTCGGTGGGTTTCGGCAGCTAGCTCCCAAGGACGTGGTGCTGAACAATCTAGCTCTGTCAGACGTGAACTTGCAGGACTTGATAGCCAGTGCCGATGAGGTGACGTCGGAGGAGAAGAAAGACGACAAGGGACAGGTTTACTATGTGTATGAGATCAATGGGGTTGCTGCACATAGTTTGATTTCGGTCACTTGTGCTAACAACAAGCTTTATGCTCATTTTGTCAATGCGCCTACCCCCGAGTGGAACCGCGACAATGATATGTTGAAGCATGTTCATGAGTCTTTCAAAACTGTTGGATCCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PsbP

Protein Analysis

241

Amino Acids

26.22

Weight (kDa)

5.96

Isoelectric Point (pI)

31.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbP PF01789 96 - 236 7.1e-08 PsbP
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 306, 524
AccB1I GGYRCC 1 cut(s) 224
AccII CGCG 2 cut(s) 239, 669
AclWI GGATC 2 cut(s) 711, 724
AcoI YGGCCR 1 cut(s) 240
AcsI RAATTY 2 cut(s) 213, 371
AcyI GRCGYC 2 cut(s) 303, 521
AfaI GTAC 2 cut(s) 352, 407
AfiI CCNNNNNNNGG 1 cut(s) 660
AgsI TTSAA 2 cut(s) 685, 706
AjiI CACGTC 2 cut(s) 451, 481
AluBI AGCT 5 cut(s) 158, 436, 440, 470, 625
AluI AGCT 5 cut(s) 158, 436, 440, 470, 625
AlwI GGATC 2 cut(s) 711, 724
Ama87I CYCGRG 1 cut(s) 656
AoxI GGCC 1 cut(s) 240
ApeKI GCWGC 5 cut(s) 121, 155, 158, 433, 584
ApoI RAATTY 2 cut(s) 213, 371
AspLEI GCGC 2 cut(s) 239, 649
AsuHPI GGTGA 2 cut(s) 94, 529
AsuNHI GCTAGC 1 cut(s) 436
AvaI CYCGRG 1 cut(s) 656
BamHI GGATCC 1 cut(s) 716
BanI GGYRCC 1 cut(s) 224
BbsI GAAGAC 2 cut(s) 284, 398
BbvI GCAGC 5 cut(s) 133, 145, 167, 445, 571
BccI CCATC 3 cut(s) 56, 61, 173
BceAI ACGGC 2 cut(s) 238, 265
BciVI GTATCC 1 cut(s) 248
BfaI CTAG 2 cut(s) 437, 467
BfuI GTATCC 1 cut(s) 248
BglI GCCNNNNNGGC 1 cut(s) 239
BisI GCNGC 9 cut(s) 122, 153, 156, 159, 162, 231, 240, 434, 585
BlsI GCNGC 9 cut(s) 123, 154, 157, 160, 163, 232, 241, 435, 586
BmeT110I CYCGRG 1 cut(s) 656
BmgBI CACGTC 2 cut(s) 451, 481
BmiI GGNNCC 3 cut(s) 226, 665, 718
BmtI GCTAGC 1 cut(s) 440
BpiI GAAGAC 2 cut(s) 284, 398
BsaHI GRCGYC 2 cut(s) 303, 521
BsaJI CCNNGG 2 cut(s) 418, 444
BsaXI ACNNNNNCTCC 4 cut(s) 163, 193, 389, 419
Bsc4I CCNNNNNNNGG 1 cut(s) 660
Bse1I ACTGG 1 cut(s) 504
BseDI CCNNGG 2 cut(s) 418, 444
BseGI GGATG 2 cut(s) 48, 165
BseLI CCNNNNNNNGG 1 cut(s) 660
BseNI ACTGG 1 cut(s) 504
BseRI GAGGAG 1 cut(s) 542
BseXI GCAGC 5 cut(s) 133, 145, 167, 445, 571
BsgI GTGCAG 1 cut(s) 570
Bsh1236I CGCG 2 cut(s) 239, 669
BshFI GGCC 1 cut(s) 242
BshNI GGYRCC 1 cut(s) 224
BsiHKCI CYCGRG 1 cut(s) 656
BslFI GGGAC 2 cut(s) 290, 561
BslI CCNNNNNNNGG 1 cut(s) 660
BsmFI GGGAC 2 cut(s) 290, 561
BsnI GGCC 1 cut(s) 242
BsoBI CYCGRG 1 cut(s) 656
Bsp143I GATC 2 cut(s) 570, 716
BspANI GGCC 1 cut(s) 242
BspFNI CGCG 2 cut(s) 239, 669
BspHI TCATGA 1 cut(s) 694
BspLI GGNNCC 3 cut(s) 226, 665, 718
BspOI GCTAGC 1 cut(s) 440
BspPI GGATC 2 cut(s) 711, 724
BspT107I GGYRCC 1 cut(s) 224
BsrI ACTGG 1 cut(s) 504
BssECI CCNNGG 2 cut(s) 418, 444
BssMI GATC 2 cut(s) 570, 716
BssNI GRCGYC 2 cut(s) 303, 521
BssT1I CCWWGG 1 cut(s) 444
Bst4CI ACNGT 5 cut(s) 84, 260, 314, 368, 712
BstACI GRCGYC 2 cut(s) 303, 521
BstC8I GCNNGC 2 cut(s) 235, 438
BstF5I GGATG 2 cut(s) 48, 165
BstFNI CGCG 2 cut(s) 239, 669
BstHHI GCGC 2 cut(s) 239, 649
BstKTI GATC 2 cut(s) 573, 719
BstMBI GATC 2 cut(s) 570, 716
BstMWI GCNNNNNNNGC 5 cut(s) 152, 158, 161, 236, 239
BstNSI RCATGY 1 cut(s) 692
BstUI CGCG 2 cut(s) 239, 669
BstV1I GCAGC 5 cut(s) 133, 145, 167, 445, 571
BstV2I GAAGAC 2 cut(s) 284, 398
BstX2I RGATCY 1 cut(s) 716
BstXI CCANNNNNNTGG 2 cut(s) 315, 451
BstYI RGATCY 1 cut(s) 716
BsuI GTATCC 1 cut(s) 248
BsuRI GGCC 1 cut(s) 242
BtrI CACGTC 2 cut(s) 451, 481
BtsCI GGATG 2 cut(s) 48, 165
BtsIMutI CAGTG 2 cut(s) 373, 511
Cac8I GCNNGC 2 cut(s) 235, 438
CciI TCATGA 1 cut(s) 694
CfoI GCGC 2 cut(s) 239, 649
Csp6I GTAC 2 cut(s) 351, 406
CviAII CATG 3 cut(s) 10, 689, 695
CviJI RGCY 9 cut(s) 5, 124, 158, 242, 436, 440, 470, 503, 625
CviKI_1 RGCY 9 cut(s) 5, 124, 158, 242, 436, 440, 470, 503, 625
CviQI GTAC 2 cut(s) 351, 406
DpnI GATC 2 cut(s) 572, 718
DpnII GATC 2 cut(s) 570, 716
EaeI YGGCCR 1 cut(s) 240
EciI GGCGGA 2 cut(s) 267, 274
Eco130I CCWWGG 1 cut(s) 444
Eco88I CYCGRG 1 cut(s) 656
EcoRI GAATTC 1 cut(s) 371
EcoT14I CCWWGG 1 cut(s) 444
ErhI CCWWGG 1 cut(s) 444
FaeI CATG 3 cut(s) 13, 692, 698
FaqI GGGAC 2 cut(s) 290, 561
FatI CATG 3 cut(s) 9, 688, 694
Fnu4HI GCNGC 9 cut(s) 122, 153, 156, 159, 162, 231, 240, 434, 585
FokI GGATG 2 cut(s) 35, 152
Fsp4HI GCNGC 9 cut(s) 122, 153, 156, 159, 162, 231, 240, 434, 585
FspBI CTAG 2 cut(s) 437, 467
GlaI GCGC 2 cut(s) 238, 648
GluI GCNGC 9 cut(s) 122, 153, 156, 159, 162, 231, 240, 434, 585
HaeIII GGCC 1 cut(s) 242
HhaI GCGC 2 cut(s) 239, 649
Hin1I GRCGYC 2 cut(s) 303, 521
Hin1II CATG 3 cut(s) 13, 692, 698
Hin6I GCGC 2 cut(s) 237, 647
HinP1I GCGC 2 cut(s) 237, 647
HindIII AAGCTT 1 cut(s) 623
HinfI GANTC 2 cut(s) 197, 698
HphI GGTGA 2 cut(s) 94, 529
Hpy166II GTNNAC 2 cut(s) 484, 556
Hpy188I TCNGA 3 cut(s) 271, 478, 526
Hpy188III TCNNGA 2 cut(s) 87, 695
Hpy8I GTNNAC 2 cut(s) 484, 556
Hpy99I CGWCG 1 cut(s) 526
HpyCH4III ACNGT 5 cut(s) 84, 260, 314, 368, 712
HpyCH4IV ACGT 4 cut(s) 303, 450, 480, 521
HpyCH4V TGCA 2 cut(s) 490, 587
HpyF10VI GCNNNNNNNGC 5 cut(s) 152, 158, 161, 236, 239
HpySE526I ACGT 4 cut(s) 303, 450, 480, 521
Hsp92I GRCGYC 2 cut(s) 303, 521
Hsp92II CATG 3 cut(s) 13, 692, 698
HspAI GCGC 2 cut(s) 237, 647
Kzo9I GATC 2 cut(s) 570, 716
LmnI GCTCC 1 cut(s) 445
LpnPI CCDG 7 cut(s) 100, 247, 321, 422, 476, 517, 536
Lsp1109I GCAGC 5 cut(s) 133, 145, 167, 445, 571
MaeI CTAG 2 cut(s) 437, 467
MaeII ACGT 4 cut(s) 303, 450, 480, 521
MaeIII GTNAC 2 cut(s) 517, 604
MalI GATC 2 cut(s) 572, 718
MboI GATC 2 cut(s) 570, 716
MboII GAAGA 5 cut(s) 289, 397, 400, 403, 544
MflI RGATCY 1 cut(s) 716
MluCI AATT 2 cut(s) 213, 371
MlyI GAGTC 2 cut(s) 191, 707
MmeI TCCRAC 4 cut(s) 294, 296, 504, 694
MnlI CCTC 7 cut(s) 78, 110, 124, 196, 428, 508, 520
MseI TTAA 2 cut(s) 131, 140
MslI CAYNNNNRTG 1 cut(s) 693
MspA1I CMGCKG 1 cut(s) 158
MvnI CGCG 2 cut(s) 239, 669
MwoI GCNNNNNNNGC 5 cut(s) 152, 158, 161, 236, 239
NdeII GATC 2 cut(s) 570, 716
NheI GCTAGC 1 cut(s) 436
NlaIII CATG 3 cut(s) 13, 692, 698
NlaIV GGNNCC 3 cut(s) 226, 665, 718
NmeAIII GCCGAG 1 cut(s) 313
NmuCI GTSAC 2 cut(s) 517, 604
NspI RCATGY 1 cut(s) 692
PagI TCATGA 1 cut(s) 694
PkrI GCNGC 9 cut(s) 123, 154, 157, 160, 163, 232, 241, 435, 586
PleI GAGTC 2 cut(s) 191, 706
PpsI GAGTC 2 cut(s) 191, 706
PspN4I GGNNCC 3 cut(s) 226, 665, 718
PsuI RGATCY 1 cut(s) 716
PvuII CAGCTG 1 cut(s) 158
RsaI GTAC 2 cut(s) 352, 407
RsaNI GTAC 2 cut(s) 351, 406
RseI CAYNNNNRTG 1 cut(s) 693
SaqAI TTAA 2 cut(s) 131, 140
SatI GCNGC 9 cut(s) 122, 153, 156, 159, 162, 231, 240, 434, 585
Sau3AI GATC 2 cut(s) 570, 716
SchI GAGTC 2 cut(s) 191, 707
SmiMI CAYNNNNRTG 1 cut(s) 693
Sse9I AATT 2 cut(s) 213, 371
SspMI CTAG 2 cut(s) 437, 467
StyI CCWWGG 1 cut(s) 444
TaaI ACNGT 5 cut(s) 84, 260, 314, 368, 712
TaiI ACGT 4 cut(s) 306, 453, 483, 524
TaqI TCGA 1 cut(s) 342
TaqII GACCGA 1 cut(s) 592
TasI AATT 2 cut(s) 213, 371
TauI GCSGC 4 cut(s) 155, 164, 233, 242
Tru1I TTAA 2 cut(s) 131, 140
Tru9I TTAA 2 cut(s) 131, 140
TscAI CASTG 2 cut(s) 373, 511
TseFI GTSAC 2 cut(s) 517, 604
TseI GCWGC 5 cut(s) 121, 155, 158, 433, 584
Tsp45I GTSAC 2 cut(s) 517, 604
TspDTI ATGAA 1 cut(s) 683
TspGWI ACGGA 1 cut(s) 410
TspRI CASTG 2 cut(s) 373, 511
XapI RAATTY 2 cut(s) 213, 371
XceI RCATGY 1 cut(s) 692
XspI CTAG 2 cut(s) 437, 467
ZraI GACGTC 2 cut(s) 304, 522
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.