MD07G1008600.v1.1

Thylakoid lumenal 19 kDa protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0005710
Physical Location & Seq
Forward (+)
804013 .. 805108
1096 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1008600.v1.1.491

Sequence Viewer

Length: 753 bp
ATGGCTACCATGTTCTCACCCTCAACCTTCTCCTCCACCACCACCACAGCCACCAACACCACCATCACATCTCCAAAACCACCCCCAACTCCACTACCCCCAAGATCCCACCTCCCCATCCCACCCTCCAAACCACTCCTAAGTACCTTAACCACCACACTAACTGCCACCGCCGCTGCGGCTGCCATCCTAACCGCCTCTCCACCCTCATTAGCAGGCCCCACAGCAACAACTTACCAAATCTACTACGGCACTGCTGCCAGCGCGGCCAACTATGGCGGTTACGGTGGCAACTCCGACAAGAAAGCCTCCGCTGAGTATGTCTATGATGTGCCAGATGGATGGAAAGAGCGTTTGGTATCAAAAGTCGAAAAGGGGACAAATGGGACTGATAGCGAATTTTATAACCCGAAGAAGAAGTCAGAGAAAGAGTACTTGACATTCCTTTCCGGGTTTAGGCAACTAGCACCGAAGGATGAGGTGCTGAACAATTTGGCTTTGTCAGATGTGAACTTGCAGGACTTGCTAGCGAGTGCAGATAATGTGACATCGGAGGAAAGGAAGGACGAGAAGGGACAGGTTTACTACGTGTATGAGATCGATGGAGTTGCTGCTCATAGTTTGATTTCAGTGACTTGTGCTCAGAACAAGCTATATGCACATTTTGTCAATGCACCAATTACGGAGTGGAACCGTGACCATGACTTGTTGCAGCATGTTCATGAGTCCTTTAAAACTATTGGATCCTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PsbP

Protein Analysis

251

Amino Acids

27.05

Weight (kDa)

5.86

Isoelectric Point (pI)

35.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbP PF01789 105 - 245 1.7e-07 PsbP
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 405
AccII CGCG 1 cut(s) 266
AciI CCGC 7 cut(s) 171, 174, 179, 195, 266, 279, 312
AclWI GGATC 3 cut(s) 99, 738, 751
AcoI YGGCCR 1 cut(s) 267
AcsI RAATTY 1 cut(s) 398
AfaI GTAC 2 cut(s) 145, 434
AfiI CCNNNNNNNGG 1 cut(s) 456
AflIII ACRYGT 1 cut(s) 588
AjuI GAANNNNNNNTTGG 2 cut(s) 338, 370
AluBI AGCT 1 cut(s) 652
AluI AGCT 1 cut(s) 652
Alw21I GWGCWC 1 cut(s) 643
AlwI GGATC 3 cut(s) 99, 738, 751
AoxI GGCC 2 cut(s) 217, 267
ApeKI GCWGC 5 cut(s) 176, 182, 257, 611, 712
ApoI RAATTY 1 cut(s) 398
ArsI GACNNNNNNTTYG 2 cut(s) 404, 436
AspLEI GCGC 1 cut(s) 266
AspS9I GGNCC 1 cut(s) 218
AsuC2I CCSGG 1 cut(s) 451
AsuHPI GGTGA 1 cut(s) 9
AsuNHI GCTAGC 1 cut(s) 526
BamHI GGATCC 1 cut(s) 743
Bbv12I GWGCWC 1 cut(s) 643
BbvI GCAGC 5 cut(s) 163, 169, 244, 598, 724
BccI CCATC 6 cut(s) 71, 125, 194, 332, 336, 596
BceAI ACGGC 1 cut(s) 265
BcgI CGANNNNNNTGC 2 cut(s) 590, 624
BcnI CCSGG 1 cut(s) 451
BfaI CTAG 2 cut(s) 464, 527
BglI GCCNNNNNGGC 2 cut(s) 179, 266
BisI GCNGC 8 cut(s) 174, 177, 180, 183, 258, 267, 612, 713
BlsI GCNGC 8 cut(s) 175, 178, 181, 184, 259, 268, 613, 714
BmcAI AGTACT 1 cut(s) 434
Bme1390I CCNGG 1 cut(s) 451
BmgT120I GGNCC 1 cut(s) 218
BmiI GGNNCC 3 cut(s) 220, 692, 745
BmrFI CCNGG 1 cut(s) 451
BmtI GCTAGC 1 cut(s) 530
BpuMI CCSGG 1 cut(s) 451
Bsa29I ATCGAT 1 cut(s) 600
BsaAI YACGTR 1 cut(s) 589
BsaXI ACNNNNNCTCC 2 cut(s) 184, 214
Bsc4I CCNNNNNNNGG 1 cut(s) 456
BseCI ATCGAT 1 cut(s) 600
BseGI GGATG 4 cut(s) 117, 186, 347, 481
BseLI CCNNNNNNNGG 1 cut(s) 456
BseMII CTCAG 2 cut(s) 306, 656
BseRI GAGGAG 1 cut(s) 22
BseXI GCAGC 5 cut(s) 163, 169, 244, 598, 724
BsgI GTGCAG 1 cut(s) 555
Bsh1236I CGCG 1 cut(s) 266
BshFI GGCC 2 cut(s) 219, 269
BshVI ATCGAT 1 cut(s) 600
BsiHKAI GWGCWC 1 cut(s) 643
BsiSI CCGG 1 cut(s) 450
BslFI GGGAC 3 cut(s) 391, 400, 588
BslI CCNNNNNNNGG 1 cut(s) 456
BsmFI GGGAC 3 cut(s) 391, 400, 588
BsnI GGCC 2 cut(s) 219, 269
Bsp1286I GDGCHC 1 cut(s) 643
Bsp143I GATC 3 cut(s) 104, 597, 743
BspACI CCGC 7 cut(s) 171, 174, 179, 195, 266, 279, 312
BspANI GGCC 2 cut(s) 219, 269
BspCNI CTCAG 2 cut(s) 307, 655
BspDI ATCGAT 1 cut(s) 600
BspFNI CGCG 1 cut(s) 266
BspHI TCATGA 1 cut(s) 721
BspLI GGNNCC 3 cut(s) 220, 692, 745
BspOI GCTAGC 1 cut(s) 530
BspPI GGATC 3 cut(s) 99, 738, 751
BssMI GATC 3 cut(s) 104, 597, 743
Bst4CI ACNGT 2 cut(s) 287, 695
BstAPI GCANNNNNTGC 1 cut(s) 523
BstBAI YACGTR 1 cut(s) 589
BstC8I GCNNGC 3 cut(s) 217, 262, 528
BstDEI CTNAG 3 cut(s) 140, 315, 642
BstF5I GGATG 4 cut(s) 117, 186, 347, 481
BstFNI CGCG 1 cut(s) 266
BstHHI GCGC 1 cut(s) 266
BstKTI GATC 3 cut(s) 107, 600, 746
BstMBI GATC 3 cut(s) 104, 597, 743
BstMWI GCNNNNNNNGC 6 cut(s) 173, 179, 182, 263, 266, 523
BstNSI RCATGY 1 cut(s) 719
BstSCI CCNGG 1 cut(s) 449
BstUI CGCG 1 cut(s) 266
BstV1I GCAGC 5 cut(s) 163, 169, 244, 598, 724
BstX2I RGATCY 2 cut(s) 104, 743
BstXI CCANNNNNNTGG 1 cut(s) 342
BstYI RGATCY 2 cut(s) 104, 743
Bsu15I ATCGAT 1 cut(s) 600
BsuRI GGCC 2 cut(s) 219, 269
BsuTUI ATCGAT 1 cut(s) 600
BtsCI GGATG 4 cut(s) 117, 186, 347, 481
BtsI GCAGTG 1 cut(s) 252
BtsIMutI CAGTG 2 cut(s) 252, 636
Cac8I GCNNGC 3 cut(s) 217, 262, 528
CciI TCATGA 1 cut(s) 721
CfoI GCGC 1 cut(s) 266
Cfr13I GGNCC 1 cut(s) 218
ClaI ATCGAT 1 cut(s) 600
Csp6I GTAC 2 cut(s) 144, 433
CviAII CATG 4 cut(s) 10, 701, 716, 722
CviJI RGCY 8 cut(s) 5, 50, 182, 219, 269, 308, 497, 652
CviKI_1 RGCY 8 cut(s) 5, 50, 182, 219, 269, 308, 497, 652
CviQI GTAC 2 cut(s) 144, 433
DdeI CTNAG 3 cut(s) 140, 315, 642
DpnI GATC 3 cut(s) 106, 599, 745
DpnII GATC 3 cut(s) 104, 597, 743
DraI TTTAAA 1 cut(s) 733
EaeI YGGCCR 1 cut(s) 267
EcoO109I RGGNCCY 1 cut(s) 218
FaeI CATG 4 cut(s) 13, 704, 719, 725
FaqI GGGAC 3 cut(s) 391, 400, 588
FatI CATG 4 cut(s) 9, 700, 715, 721
Fnu4HI GCNGC 8 cut(s) 174, 177, 180, 183, 258, 267, 612, 713
FokI GGATG 4 cut(s) 104, 173, 354, 488
Fsp4HI GCNGC 8 cut(s) 174, 177, 180, 183, 258, 267, 612, 713
FspBI CTAG 2 cut(s) 464, 527
GlaI GCGC 1 cut(s) 265
GluI GCNGC 8 cut(s) 174, 177, 180, 183, 258, 267, 612, 713
HaeIII GGCC 2 cut(s) 219, 269
HapII CCGG 1 cut(s) 450
HhaI GCGC 1 cut(s) 266
Hin1II CATG 4 cut(s) 13, 704, 719, 725
Hin6I GCGC 1 cut(s) 264
HinP1I GCGC 1 cut(s) 264
HinfI GANTC 1 cut(s) 725
HpaII CCGG 1 cut(s) 450
HphI GGTGA 1 cut(s) 9
Hpy166II GTNNAC 2 cut(s) 511, 583
Hpy188I TCNGA 5 cut(s) 298, 424, 505, 553, 645
Hpy188III TCNNGA 1 cut(s) 722
Hpy8I GTNNAC 2 cut(s) 511, 583
HpyAV CCTTC 4 cut(s) 37, 466, 556, 565
HpyCH4III ACNGT 2 cut(s) 287, 695
HpyCH4IV ACGT 1 cut(s) 588
HpyCH4V TGCA 5 cut(s) 517, 536, 659, 674, 712
HpyF10VI GCNNNNNNNGC 6 cut(s) 173, 179, 182, 263, 266, 523
HpyF3I CTNAG 3 cut(s) 140, 315, 642
HpySE526I ACGT 1 cut(s) 588
Hsp92II CATG 4 cut(s) 13, 704, 719, 725
HspAI GCGC 1 cut(s) 264
Kzo9I GATC 3 cut(s) 104, 597, 743
LpnPI CCDG 6 cut(s) 201, 274, 348, 463, 503, 563
Lsp1109I GCAGC 5 cut(s) 163, 169, 244, 598, 724
MaeI CTAG 2 cut(s) 464, 527
MaeII ACGT 1 cut(s) 588
MaeIII GTNAC 4 cut(s) 281, 544, 631, 695
MalI GATC 3 cut(s) 106, 599, 745
MboI GATC 3 cut(s) 104, 597, 743
MboII GAAGA 2 cut(s) 424, 427
MflI RGATCY 2 cut(s) 104, 743
MhlI GDGCHC 1 cut(s) 643
MluCI AATT 3 cut(s) 398, 490, 678
MlyI GAGTC 1 cut(s) 734
MmeI TCCRAC 1 cut(s) 321
MnlI CCTC 9 cut(s) 31, 43, 122, 136, 208, 217, 319, 472, 547
MseI TTAA 2 cut(s) 149, 732
MslI CAYNNNNRTG 1 cut(s) 720
MspA1I CMGCKG 2 cut(s) 176, 314
MspI CCGG 1 cut(s) 450
MspR9I CCNGG 1 cut(s) 451
MvnI CGCG 1 cut(s) 266
MwoI GCNNNNNNNGC 6 cut(s) 173, 179, 182, 263, 266, 523
NciI CCSGG 1 cut(s) 451
NdeII GATC 3 cut(s) 104, 597, 743
NheI GCTAGC 1 cut(s) 526
NlaIII CATG 4 cut(s) 13, 704, 719, 725
NlaIV GGNNCC 3 cut(s) 220, 692, 745
NmuCI GTSAC 3 cut(s) 544, 631, 695
NspI RCATGY 1 cut(s) 719
PagI TCATGA 1 cut(s) 721
PkrI GCNGC 8 cut(s) 175, 178, 181, 184, 259, 268, 613, 714
PleI GAGTC 1 cut(s) 733
PpsI GAGTC 1 cut(s) 733
Ppu21I YACGTR 1 cut(s) 589
PsiI TTATAA 1 cut(s) 405
PspN4I GGNNCC 3 cut(s) 220, 692, 745
PspPI GGNCC 1 cut(s) 218
PsuI RGATCY 2 cut(s) 104, 743
RsaI GTAC 2 cut(s) 145, 434
RsaNI GTAC 2 cut(s) 144, 433
RseI CAYNNNNRTG 1 cut(s) 720
SaqAI TTAA 2 cut(s) 149, 732
SatI GCNGC 8 cut(s) 174, 177, 180, 183, 258, 267, 612, 713
Sau3AI GATC 3 cut(s) 104, 597, 743
Sau96I GGNCC 1 cut(s) 218
ScaI AGTACT 1 cut(s) 434
SchI GAGTC 1 cut(s) 734
ScrFI CCNGG 1 cut(s) 451
SduI GDGCHC 1 cut(s) 643
SetI ASST 7 cut(s) 29, 114, 149, 483, 582, 591, 654
SmiMI CAYNNNNRTG 1 cut(s) 720
Sse9I AATT 3 cut(s) 398, 490, 678
SsiI CCGC 7 cut(s) 171, 174, 179, 195, 266, 279, 312
SspMI CTAG 2 cut(s) 464, 527
StyD4I CCNGG 1 cut(s) 449
TaaI ACNGT 2 cut(s) 287, 695
TaiI ACGT 1 cut(s) 591
TaqI TCGA 2 cut(s) 369, 600
TasI AATT 3 cut(s) 398, 490, 678
TatI WGTACW 1 cut(s) 432
TauI GCSGC 3 cut(s) 176, 182, 269
Tru1I TTAA 2 cut(s) 149, 732
Tru9I TTAA 2 cut(s) 149, 732
TscAI CASTG 2 cut(s) 259, 636
TseFI GTSAC 3 cut(s) 544, 631, 695
TseI GCWGC 5 cut(s) 176, 182, 257, 611, 712
Tsp45I GTSAC 3 cut(s) 544, 631, 695
TspDTI ATGAA 1 cut(s) 710
TspGWI ACGGA 1 cut(s) 698
TspRI CASTG 2 cut(s) 259, 636
XapI RAATTY 1 cut(s) 398
XceI RCATGY 1 cut(s) 719
XcmI CCANNNNNNNNNTGG 1 cut(s) 684
XspI CTAG 2 cut(s) 464, 527
ZrmI AGTACT 1 cut(s) 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.