Rh1AG016500

Thylakoid lumenal 19 kDa protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0005710
Physical Location & Seq
Forward (+)
2810709 .. 2811225
517 bp
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UTR
Exon/CDS
Intron
Rh1AG016500.1

Sequence Viewer

Length: 393 bp
ATGGCGGATACAGTGGCAACTCCCACAAGAAGACTTCGGCCGAGTACAAATGGAACTGACAGTGAATTCTACAATCCGAAGAAGAAGACGGAGAAAGAGTACCTGTCTTACCTCGGTGGGTTTTGGCAGCTAGCTACGAAGGACGTGGTGCTGAACAATCTAGCTCTGTCAGACATGAACTTGCAGGACTTGATAGCTAGTGTTGATGTCGTTACGTTGGAGGAGAAGAAAGACGAGAAGGGACAGGTTTACTATGTGTATGAGATCAATGAGGTTGCAGCACATAGTTTGATTTCAATGACTTGTGCTAACAACAAGCTTTATGCTCATTTTGTCAATGCGCCTACCCCCGAGTGGAACCTCGACAATGATATGTTGAAGCATGTTCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PsbP

Protein Analysis

130

Amino Acids

14.8

Weight (kDa)

5.28

Isoelectric Point (pI)

29.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 5
AcoI YGGCCR 1 cut(s) 38
AcsI RAATTY 1 cut(s) 65
AfaI GTAC 2 cut(s) 46, 101
AfiI CCNNNNNNNGG 1 cut(s) 354
AgsI TTSAA 2 cut(s) 297, 379
AjiI CACGTC 1 cut(s) 145
AluBI AGCT 5 cut(s) 130, 134, 164, 197, 319
AluI AGCT 5 cut(s) 130, 134, 164, 197, 319
Ama87I CYCGRG 1 cut(s) 350
AoxI GGCC 1 cut(s) 38
ApeKI GCWGC 2 cut(s) 127, 278
ApoI RAATTY 1 cut(s) 65
AspLEI GCGC 1 cut(s) 343
AsuNHI GCTAGC 1 cut(s) 130
AvaI CYCGRG 1 cut(s) 350
BbsI GAAGAC 2 cut(s) 37, 92
BbvI GCAGC 2 cut(s) 139, 290
BfaI CTAG 3 cut(s) 131, 161, 198
BisI GCNGC 2 cut(s) 128, 279
BlsI GCNGC 2 cut(s) 129, 280
BmeT110I CYCGRG 1 cut(s) 350
BmgBI CACGTC 1 cut(s) 145
BmiI GGNNCC 1 cut(s) 359
BmtI GCTAGC 1 cut(s) 134
BpiI GAAGAC 2 cut(s) 37, 92
BsaJI CCNNGG 1 cut(s) 112
BsaXI ACNNNNNCTCC 2 cut(s) 83, 113
Bsc4I CCNNNNNNNGG 1 cut(s) 354
BseDI CCNNGG 1 cut(s) 112
BseLI CCNNNNNNNGG 1 cut(s) 354
BseRI GAGGAG 1 cut(s) 236
BseX3I CGGCCG 1 cut(s) 38
BseXI GCAGC 2 cut(s) 139, 290
Bsh1285I CGRYCG 1 cut(s) 41
BshFI GGCC 1 cut(s) 40
BsiEI CGRYCG 1 cut(s) 41
BsiHKCI CYCGRG 1 cut(s) 350
BslFI GGGAC 1 cut(s) 255
BslI CCNNNNNNNGG 1 cut(s) 354
BsmFI GGGAC 1 cut(s) 255
BsnI GGCC 1 cut(s) 40
BsoBI CYCGRG 1 cut(s) 350
Bsp143I GATC 1 cut(s) 264
BspACI CCGC 1 cut(s) 5
BspANI GGCC 1 cut(s) 40
BspLI GGNNCC 1 cut(s) 359
BspOI GCTAGC 1 cut(s) 134
BssECI CCNNGG 1 cut(s) 112
BssMI GATC 1 cut(s) 264
Bst4CI ACNGT 2 cut(s) 13, 62
BstC8I GCNNGC 1 cut(s) 132
BstHHI GCGC 1 cut(s) 343
BstKTI GATC 1 cut(s) 267
BstMBI GATC 1 cut(s) 264
BstMCI CGRYCG 1 cut(s) 41
BstNSI RCATGY 1 cut(s) 386
BstV1I GCAGC 2 cut(s) 139, 290
BstV2I GAAGAC 2 cut(s) 37, 92
BstZI CGGCCG 1 cut(s) 38
BsuRI GGCC 1 cut(s) 40
BtrI CACGTC 1 cut(s) 145
BtsIMutI CAGTG 2 cut(s) 18, 67
Cac8I GCNNGC 1 cut(s) 132
CfoI GCGC 1 cut(s) 343
Csp6I GTAC 2 cut(s) 45, 100
CviAII CATG 2 cut(s) 175, 383
CviJI RGCY 6 cut(s) 40, 130, 134, 164, 197, 319
CviKI_1 RGCY 6 cut(s) 40, 130, 134, 164, 197, 319
CviQI GTAC 2 cut(s) 45, 100
DpnI GATC 1 cut(s) 266
DpnII GATC 1 cut(s) 264
EaeI YGGCCR 1 cut(s) 38
EagI CGGCCG 1 cut(s) 38
EciI GGCGGA 1 cut(s) 20
EclXI CGGCCG 1 cut(s) 38
Eco52I CGGCCG 1 cut(s) 38
Eco88I CYCGRG 1 cut(s) 350
EcoRI GAATTC 1 cut(s) 65
FaeI CATG 2 cut(s) 178, 386
FaiI YATR 7 cut(s) 176, 255, 261, 285, 324, 374, 384
FaqI GGGAC 1 cut(s) 255
FatI CATG 2 cut(s) 174, 382
Fnu4HI GCNGC 2 cut(s) 128, 279
Fsp4HI GCNGC 2 cut(s) 128, 279
FspBI CTAG 3 cut(s) 131, 161, 198
GlaI GCGC 1 cut(s) 342
GluI GCNGC 2 cut(s) 128, 279
HaeIII GGCC 1 cut(s) 40
HhaI GCGC 1 cut(s) 343
Hin1II CATG 2 cut(s) 178, 386
Hin6I GCGC 1 cut(s) 341
HinP1I GCGC 1 cut(s) 341
HindIII AAGCTT 1 cut(s) 317
Hpy166II GTNNAC 1 cut(s) 250
Hpy188I TCNGA 2 cut(s) 78, 172
Hpy8I GTNNAC 1 cut(s) 250
HpyAV CCTTC 2 cut(s) 133, 232
HpyCH4III ACNGT 2 cut(s) 13, 62
HpyCH4IV ACGT 2 cut(s) 144, 215
HpyCH4V TGCA 2 cut(s) 184, 278
HpySE526I ACGT 2 cut(s) 144, 215
Hsp92II CATG 2 cut(s) 178, 386
HspAI GCGC 1 cut(s) 341
Kzo9I GATC 1 cut(s) 264
LpnPI CCDG 3 cut(s) 116, 170, 230
Lsp1109I GCAGC 2 cut(s) 139, 290
MaeI CTAG 3 cut(s) 131, 161, 198
MaeII ACGT 2 cut(s) 144, 215
MaeIII GTNAC 1 cut(s) 211
MalI GATC 1 cut(s) 266
MboI GATC 1 cut(s) 264
MboII GAAGA 5 cut(s) 42, 91, 94, 97, 238
MluCI AATT 1 cut(s) 65
MmeI TCCRAC 1 cut(s) 198
MnlI CCTC 4 cut(s) 122, 214, 265, 371
NdeII GATC 1 cut(s) 264
NheI GCTAGC 1 cut(s) 130
NlaIII CATG 2 cut(s) 178, 386
NlaIV GGNNCC 1 cut(s) 359
NmeAIII GCCGAG 1 cut(s) 66
NspI RCATGY 1 cut(s) 386
PkrI GCNGC 2 cut(s) 129, 280
PspN4I GGNNCC 1 cut(s) 359
RsaI GTAC 2 cut(s) 46, 101
RsaNI GTAC 2 cut(s) 45, 100
SatI GCNGC 2 cut(s) 128, 279
Sau3AI GATC 1 cut(s) 264
Sse9I AATT 1 cut(s) 65
SsiI CCGC 1 cut(s) 5
SspMI CTAG 3 cut(s) 131, 161, 198
TaaI ACNGT 2 cut(s) 13, 62
TaiI ACGT 2 cut(s) 147, 218
TaqI TCGA 1 cut(s) 363
TasI AATT 1 cut(s) 65
TatI WGTACW 1 cut(s) 44
TscAI CASTG 2 cut(s) 18, 67
TseI GCWGC 2 cut(s) 127, 278
TspDTI ATGAA 2 cut(s) 191, 377
TspGWI ACGGA 1 cut(s) 104
TspRI CASTG 2 cut(s) 18, 67
XapI RAATTY 1 cut(s) 65
XceI RCATGY 1 cut(s) 386
XspI CTAG 3 cut(s) 131, 161, 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.