Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8131984.1

Orthogroup ID

OG0005710

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 631

Gene Structure 631 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8131984.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 497 bp

ttccaccctccaagcagccactcttaactaccttaaccgccaccgccgcagctgccgccatcctaactgccactccaccctcattagcagactccccaacttaccaaatttactacggcaccgccgccagcgcggccaactacggcggatacggtggcaactccgacaagaagacttccgccgagtatatctatgacgtcccagacggttggaaagagcgtttagtatcaaaagtcgaaaaaggtacaaatggaactgacagtgaattctacaacccgaagaagaagacggagaaagagtacctgacatacctcggtgggtttcggcagctagctcccaaggacgtggtgctgaacaatctagctctgtcagacgtgaacttgcaggacttgatagccagtgccgatgaggtgacgtcggaggagaagaaagacgacaagggacaggtttactatgtgtatgagatcaatggggttgctgcacatagtttgatttcg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PsbP

Protein Analysis

165

Amino Acids

17.8

Weight (kDa)

4.89

Isoelectric Point (pI)

30.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005710)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63540
fragaria_vesca	FvH4_7g00900
malus_domestica	MD02G1313800.v1.1 MD07G1008600.v1.1
prunus_persica	Prupe.2G012000_v2.0.a1
pyrus_communis	pycom02g26310 pycom07g00740
rosa_chinensis	RchiOBHm_Chr1g0315791 RchiOBHm_Chr3g0473601
rosa_laevigata	RLG00000024001 RLG00000030732
rosa_multiflora	Rmu_co8131984.1_g000001 Rmu_sc0003069.1_g000013 Rmu_sc0009816.1_g000005 Rmu_sc0033628.1_g000002 Rmu_ssc0000154.1_g000002
rosa_roxburghii	Rroxscaffold_6G00408030
rosa_rugosa	Rorug01G0005600 Rorug03G0133200
rosa_samantha	Rh1AG016500 Rh1BG008900 Rh1CG013800 Rh3AG184900 Rh3BG212900 Rh3CG209400 Rh3DG208700
rosa_wichuraiana	Rw1G000970 Rw3G015960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	200, 418
AccB1I	GGYRCC	1 cut(s)	118
AccII	CGCG	1 cut(s)	133
AciI	CCGC	9 cut(s)	38, 44, 47, 56, 122, 125, 133, 146, 179
AcoI	YGGCCR	1 cut(s)	134
AcsI	RAATTY	2 cut(s)	107, 265
AcyI	GRCGYC	2 cut(s)	197, 415
AfaI	GTAC	2 cut(s)	246, 301
AjiI	CACGTC	2 cut(s)	345, 375
AluBI	AGCT	4 cut(s)	52, 330, 334, 364
AluI	AGCT	4 cut(s)	52, 330, 334, 364
AoxI	GGCC	1 cut(s)	134
ApeKI	GCWGC	5 cut(s)	15, 49, 52, 327, 478
ApoI	RAATTY	2 cut(s)	107, 265
AspLEI	GCGC	1 cut(s)	133
AsuHPI	GGTGA	1 cut(s)	423
AsuNHI	GCTAGC	1 cut(s)	330
BanI	GGYRCC	1 cut(s)	118
BbsI	GAAGAC	2 cut(s)	178, 292
BbvI	GCAGC	5 cut(s)	27, 39, 61, 339, 465
BccI	CCATC	1 cut(s)	67
BceAI	ACGGC	2 cut(s)	132, 159
BciVI	GTATCC	1 cut(s)	142
BfaI	CTAG	2 cut(s)	331, 361
BfuI	GTATCC	1 cut(s)	142
BglI	GCCNNNNNGGC	1 cut(s)	133
BisI	GCNGC	9 cut(s)	16, 47, 50, 53, 56, 125, 134, 328, 479
BlsI	GCNGC	9 cut(s)	17, 48, 51, 54, 57, 126, 135, 329, 480
BmgBI	CACGTC	2 cut(s)	345, 375
BmiI	GGNNCC	1 cut(s)	120
BmtI	GCTAGC	1 cut(s)	334
BpiI	GAAGAC	2 cut(s)	178, 292
BsaHI	GRCGYC	2 cut(s)	197, 415
BsaJI	CCNNGG	2 cut(s)	312, 338
BsaXI	ACNNNNNCTCC	4 cut(s)	57, 87, 283, 313
Bse1I	ACTGG	1 cut(s)	398
BseDI	CCNNGG	2 cut(s)	312, 338
BseGI	GGATG	1 cut(s)	59
BseNI	ACTGG	1 cut(s)	398
BseRI	GAGGAG	1 cut(s)	436
BseXI	GCAGC	5 cut(s)	27, 39, 61, 339, 465
BsgI	GTGCAG	1 cut(s)	464
Bsh1236I	CGCG	1 cut(s)	133
BshFI	GGCC	1 cut(s)	136
BshNI	GGYRCC	1 cut(s)	118
BslFI	GGGAC	2 cut(s)	184, 455
BsmFI	GGGAC	2 cut(s)	184, 455
BsnI	GGCC	1 cut(s)	136
Bsp143I	GATC	1 cut(s)	464
BspACI	CCGC	9 cut(s)	38, 44, 47, 56, 122, 125, 133, 146, 179
BspANI	GGCC	1 cut(s)	136
BspFNI	CGCG	1 cut(s)	133
BspLI	GGNNCC	1 cut(s)	120
BspOI	GCTAGC	1 cut(s)	334
BspT107I	GGYRCC	1 cut(s)	118
BsrI	ACTGG	1 cut(s)	398
BssECI	CCNNGG	2 cut(s)	312, 338
BssMI	GATC	1 cut(s)	464
BssNI	GRCGYC	2 cut(s)	197, 415
BssT1I	CCWWGG	1 cut(s)	338
Bst4CI	ACNGT	3 cut(s)	154, 208, 262
BstACI	GRCGYC	2 cut(s)	197, 415
BstC8I	GCNNGC	2 cut(s)	129, 332
BstF5I	GGATG	1 cut(s)	59
BstFNI	CGCG	1 cut(s)	133
BstHHI	GCGC	1 cut(s)	133
BstKTI	GATC	1 cut(s)	467
BstMBI	GATC	1 cut(s)	464
BstMWI	GCNNNNNNNGC	5 cut(s)	46, 52, 55, 130, 133
BstUI	CGCG	1 cut(s)	133
BstV1I	GCAGC	5 cut(s)	27, 39, 61, 339, 465
BstV2I	GAAGAC	2 cut(s)	178, 292
BstXI	CCANNNNNNTGG	2 cut(s)	209, 345
BsuI	GTATCC	1 cut(s)	142
BsuRI	GGCC	1 cut(s)	136
BtrI	CACGTC	2 cut(s)	345, 375
BtsCI	GGATG	1 cut(s)	59
BtsIMutI	CAGTG	2 cut(s)	267, 405
Cac8I	GCNNGC	2 cut(s)	129, 332
CfoI	GCGC	1 cut(s)	133
Csp6I	GTAC	2 cut(s)	245, 300
CviJI	RGCY	7 cut(s)	18, 52, 136, 330, 334, 364, 397
CviKI_1	RGCY	7 cut(s)	18, 52, 136, 330, 334, 364, 397
CviQI	GTAC	2 cut(s)	245, 300
DpnI	GATC	1 cut(s)	466
DpnII	GATC	1 cut(s)	464
EaeI	YGGCCR	1 cut(s)	134
EciI	GGCGGA	2 cut(s)	161, 168
Eco130I	CCWWGG	1 cut(s)	338
EcoRI	GAATTC	1 cut(s)	265
EcoT14I	CCWWGG	1 cut(s)	338
ErhI	CCWWGG	1 cut(s)	338
FaiI	YATR	6 cut(s)	188, 194, 309, 455, 461, 485
FaqI	GGGAC	2 cut(s)	184, 455
Fnu4HI	GCNGC	9 cut(s)	16, 47, 50, 53, 56, 125, 134, 328, 479
FokI	GGATG	1 cut(s)	46
Fsp4HI	GCNGC	9 cut(s)	16, 47, 50, 53, 56, 125, 134, 328, 479
FspBI	CTAG	2 cut(s)	331, 361
GlaI	GCGC	1 cut(s)	132
GluI	GCNGC	9 cut(s)	16, 47, 50, 53, 56, 125, 134, 328, 479
HaeIII	GGCC	1 cut(s)	136
HhaI	GCGC	1 cut(s)	133
Hin1I	GRCGYC	2 cut(s)	197, 415
Hin6I	GCGC	1 cut(s)	131
HinP1I	GCGC	1 cut(s)	131
HinfI	GANTC	1 cut(s)	91
HphI	GGTGA	1 cut(s)	423
Hpy166II	GTNNAC	2 cut(s)	378, 450
Hpy188I	TCNGA	3 cut(s)	165, 372, 420
Hpy8I	GTNNAC	2 cut(s)	378, 450
Hpy99I	CGWCG	1 cut(s)	420
HpyCH4III	ACNGT	3 cut(s)	154, 208, 262
HpyCH4IV	ACGT	4 cut(s)	197, 344, 374, 415
HpyCH4V	TGCA	2 cut(s)	384, 481
HpyF10VI	GCNNNNNNNGC	5 cut(s)	46, 52, 55, 130, 133
HpySE526I	ACGT	4 cut(s)	197, 344, 374, 415
Hsp92I	GRCGYC	2 cut(s)	197, 415
HspAI	GCGC	1 cut(s)	131
Kzo9I	GATC	1 cut(s)	464
LmnI	GCTCC	1 cut(s)	339
LpnPI	CCDG	6 cut(s)	141, 215, 316, 370, 411, 430
Lsp1109I	GCAGC	5 cut(s)	27, 39, 61, 339, 465
MaeI	CTAG	2 cut(s)	331, 361
MaeII	ACGT	4 cut(s)	197, 344, 374, 415
MaeIII	GTNAC	1 cut(s)	411
MalI	GATC	1 cut(s)	466
MboI	GATC	1 cut(s)	464
MboII	GAAGA	5 cut(s)	183, 291, 294, 297, 438
MluCI	AATT	2 cut(s)	107, 265
MlyI	GAGTC	1 cut(s)	85
MmeI	TCCRAC	3 cut(s)	188, 190, 398
MnlI	CCTC	5 cut(s)	18, 90, 322, 402, 414
MseI	TTAA	2 cut(s)	25, 34
MspA1I	CMGCKG	1 cut(s)	52
MvnI	CGCG	1 cut(s)	133
MwoI	GCNNNNNNNGC	5 cut(s)	46, 52, 55, 130, 133
NdeII	GATC	1 cut(s)	464
NheI	GCTAGC	1 cut(s)	330
NlaIV	GGNNCC	1 cut(s)	120
NmeAIII	GCCGAG	1 cut(s)	207
NmuCI	GTSAC	1 cut(s)	411
PkrI	GCNGC	9 cut(s)	17, 48, 51, 54, 57, 126, 135, 329, 480
PleI	GAGTC	1 cut(s)	85
PpsI	GAGTC	1 cut(s)	85
PspN4I	GGNNCC	1 cut(s)	120
PvuII	CAGCTG	1 cut(s)	52
RsaI	GTAC	2 cut(s)	246, 301
RsaNI	GTAC	2 cut(s)	245, 300
SaqAI	TTAA	2 cut(s)	25, 34
SatI	GCNGC	9 cut(s)	16, 47, 50, 53, 56, 125, 134, 328, 479
Sau3AI	GATC	1 cut(s)	464
SchI	GAGTC	1 cut(s)	85
Sse9I	AATT	2 cut(s)	107, 265
SsiI	CCGC	9 cut(s)	38, 44, 47, 56, 122, 125, 133, 146, 179
SspMI	CTAG	2 cut(s)	331, 361
StyI	CCWWGG	1 cut(s)	338
TaaI	ACNGT	3 cut(s)	154, 208, 262
TaiI	ACGT	4 cut(s)	200, 347, 377, 418
TaqI	TCGA	1 cut(s)	236
TasI	AATT	2 cut(s)	107, 265
TauI	GCSGC	4 cut(s)	49, 58, 127, 136
Tru1I	TTAA	2 cut(s)	25, 34
Tru9I	TTAA	2 cut(s)	25, 34
TscAI	CASTG	2 cut(s)	267, 405
TseFI	GTSAC	1 cut(s)	411
TseI	GCWGC	5 cut(s)	15, 49, 52, 327, 478
Tsp45I	GTSAC	1 cut(s)	411
TspGWI	ACGGA	1 cut(s)	304
TspRI	CASTG	2 cut(s)	267, 405
XapI	RAATTY	2 cut(s)	107, 265
XspI	CTAG	2 cut(s)	331, 361
ZraI	GACGTC	2 cut(s)	198, 416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.