Rroxscaffold_4G00331430

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0014784
Physical Location & Seq
Forward (+)
65397545 .. 65398500
956 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00331430.1

Sequence Viewer

Length: 531 bp
ATGAACTCCCCACCTTTGCAAACCCCAAAATATCTCTCTCTCCCTACCACACAGCAGCAGCGGCAATCGAGCTCGGGTCGACCGGCTCGTATGATGGCTATGGCTTTGGCTATTTCTCCAACCTTTTGTTGCAGGCCATCAAACGGTTCAAAGATCGTCAAATCGTGCTCCAATATCAGTAGTGATAGCAAAACTTACACATCCCAAATCGGCACGAAGAAGCGATGCTTGAGGTGCAACACCCTCTACACAGACGAGGATAATTCCCCCACTGCTTGCTCCTTCCATGGCCACAGTACTGGAGAGAAGGGATTATTTGCATTGGCTCCACCACACCAAGGAATTGATGGAGAGTGGAGTGACAGATCTGGAGTAATTGTGTATAGATGGAATGAGAAGAACAAGAGACCAAACACTGGAAGTGGGAATTGGAAGAAAAGATGGAGCTGTTGTCAAGAGTATGATCAGGATGCCACACCCTGTCAAAGAGGATCGCATGTTTCCTATGATGATGGCTTCACTCTATATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

176

Amino Acids

19.6

Weight (kDa)

9.1

Isoelectric Point (pI)

61.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014784)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g00910
malus_domestica MD02G1313500.v1.1
prunus_persica Prupe.2G012100_v2.0.a1 Prupe.2G012100_v2.0.a1
pyrus_communis pycom02g26300
rosa_chinensis RchiOBHm_Chr1g0315801
rosa_laevigata RLG00000030731
rosa_multiflora Rmu_co8267121.1_g000001 Rmu_sc0009816.1_g000004
rosa_roxburghii Rroxscaffold_4G00331430
rosa_rugosa Rorug01G0005600 Rorug01G0005700
rosa_samantha Rh1AG016600 Rh1BG009000 Rh1CG013900 Rh1DG009700
rosa_wichuraiana Rw1G000980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 416
AccI GTMKAC 1 cut(s) 79
AciI CCGC 1 cut(s) 61
AclWI GGATC 1 cut(s) 499
AcoI YGGCCR 1 cut(s) 289
AfaI GTAC 1 cut(s) 298
AfiI CCNNNNNNNGG 3 cut(s) 143, 338, 416
AgsI TTSAA 1 cut(s) 150
AjuI GAANNNNNNNTTGG 2 cut(s) 412, 444
AluBI AGCT 2 cut(s) 72, 447
AluI AGCT 2 cut(s) 72, 447
Alw21I GWGCWC 2 cut(s) 74, 170
Alw26I GTCTC 1 cut(s) 400
AlwI GGATC 1 cut(s) 499
Ama87I CYCGRG 1 cut(s) 73
AoxI GGCC 2 cut(s) 134, 289
ApeKI GCWGC 2 cut(s) 55, 58
AvaI CYCGRG 1 cut(s) 73
BalI TGGCCA 1 cut(s) 291
BanII GRGCYC 1 cut(s) 74
Bbv12I GWGCWC 2 cut(s) 74, 170
BbvI GCAGC 2 cut(s) 67, 70
BccI CCATC 6 cut(s) 88, 145, 341, 381, 435, 506
BclI TGATCA 1 cut(s) 463
BcoDI GTCTC 1 cut(s) 400
BglII AGATCT 1 cut(s) 365
BisI GCNGC 3 cut(s) 56, 59, 62
BlsI GCNGC 3 cut(s) 57, 60, 63
BmcAI AGTACT 1 cut(s) 298
BmeT110I CYCGRG 1 cut(s) 73
BmiI GGNNCC 1 cut(s) 327
BmsI GCATC 2 cut(s) 215, 460
BpmI CTGGAG 2 cut(s) 321, 390
BpuEI CTTGAG 1 cut(s) 250
BsaI GGTCTC 1 cut(s) 400
BsaJI CCNNGG 2 cut(s) 286, 337
BsaXI ACNNNNNCTCC 4 cut(s) 363, 393, 436, 466
Bsc4I CCNNNNNNNGG 3 cut(s) 143, 338, 416
Bse118I RCCGGY 1 cut(s) 82
Bse1I ACTGG 2 cut(s) 304, 421
BseDI CCNNGG 2 cut(s) 286, 337
BseGI GGATG 2 cut(s) 200, 475
BseLI CCNNNNNNNGG 3 cut(s) 143, 338, 416
BseNI ACTGG 2 cut(s) 304, 421
BseXI GCAGC 2 cut(s) 67, 70
Bsh1285I CGRYCG 1 cut(s) 83
BshFI GGCC 2 cut(s) 136, 291
BsiEI CGRYCG 1 cut(s) 83
BsiHKAI GWGCWC 2 cut(s) 74, 170
BsiHKCI CYCGRG 1 cut(s) 73
BsiSI CCGG 1 cut(s) 83
BslI CCNNNNNNNGG 3 cut(s) 143, 338, 416
BsmAI GTCTC 1 cut(s) 400
BsnI GGCC 2 cut(s) 136, 291
Bso31I GGTCTC 1 cut(s) 400
BsoBI CYCGRG 1 cut(s) 73
Bsp1286I GDGCHC 2 cut(s) 74, 170
Bsp143I GATC 4 cut(s) 153, 365, 463, 491
Bsp19I CCATGG 1 cut(s) 286
BspACI CCGC 1 cut(s) 61
BspANI GGCC 2 cut(s) 136, 291
BspLI GGNNCC 1 cut(s) 327
BspPI GGATC 1 cut(s) 499
BspTNI GGTCTC 1 cut(s) 400
BsrFI RCCGGY 1 cut(s) 82
BsrI ACTGG 2 cut(s) 304, 421
BssAI RCCGGY 1 cut(s) 82
BssECI CCNNGG 2 cut(s) 286, 337
BssMI GATC 4 cut(s) 153, 365, 463, 491
BssT1I CCWWGG 2 cut(s) 286, 337
Bst4CI ACNGT 2 cut(s) 146, 296
BstC8I GCNNGC 2 cut(s) 134, 277
BstDSI CCRYGG 1 cut(s) 286
BstF5I GGATG 2 cut(s) 200, 475
BstKTI GATC 4 cut(s) 156, 368, 466, 494
BstMAI GTCTC 1 cut(s) 400
BstMBI GATC 4 cut(s) 153, 365, 463, 491
BstMCI CGRYCG 1 cut(s) 83
BstMWI GCNNNNNNNGC 2 cut(s) 61, 234
BstNSI RCATGY 1 cut(s) 500
BstV1I GCAGC 2 cut(s) 67, 70
BstX2I RGATCY 1 cut(s) 365
BstXI CCANNNNNNTGG 1 cut(s) 299
BstYI RGATCY 1 cut(s) 365
BsuRI GGCC 2 cut(s) 136, 291
BtgI CCRYGG 1 cut(s) 286
BtgZI GCGATG 1 cut(s) 238
BtsCI GGATG 2 cut(s) 200, 475
BtsI GCAGTG 1 cut(s) 270
BtsIMutI CAGTG 2 cut(s) 270, 414
Cac8I GCNNGC 2 cut(s) 134, 277
Cfr10I RCCGGY 1 cut(s) 82
Csp6I GTAC 1 cut(s) 297
CviAII CATG 2 cut(s) 287, 497
CviQI GTAC 1 cut(s) 297
DpnI GATC 4 cut(s) 155, 367, 465, 493
DpnII GATC 4 cut(s) 153, 365, 463, 491
EaeI YGGCCR 1 cut(s) 289
Ecl136II GAGCTC 1 cut(s) 72
Eco130I CCWWGG 2 cut(s) 286, 337
Eco24I GRGCYC 1 cut(s) 74
Eco31I GGTCTC 1 cut(s) 400
Eco53kI GAGCTC 1 cut(s) 72
Eco88I CYCGRG 1 cut(s) 73
EcoICRI GAGCTC 1 cut(s) 72
EcoT14I CCWWGG 2 cut(s) 286, 337
EcoT38I GRGCYC 1 cut(s) 74
ErhI CCWWGG 2 cut(s) 286, 337
FaeI CATG 2 cut(s) 290, 500
FaiI YATR 8 cut(s) 92, 101, 288, 384, 462, 498, 507, 526
FalI AAGNNNNNCTT 2 cut(s) 212, 244
FatI CATG 2 cut(s) 286, 496
FbaI TGATCA 1 cut(s) 463
FblI GTMKAC 1 cut(s) 79
Fnu4HI GCNGC 3 cut(s) 56, 59, 62
FokI GGATG 2 cut(s) 187, 482
FriOI GRGCYC 1 cut(s) 74
Fsp4HI GCNGC 3 cut(s) 56, 59, 62
GluI GCNGC 3 cut(s) 56, 59, 62
GsuI CTGGAG 2 cut(s) 321, 390
HaeIII GGCC 2 cut(s) 136, 291
HapII CCGG 1 cut(s) 83
Hin1II CATG 2 cut(s) 290, 500
HincII GTYRAC 1 cut(s) 80
HindII GTYRAC 1 cut(s) 80
HpaII CCGG 1 cut(s) 83
Hpy166II GTNNAC 1 cut(s) 80
Hpy188III TCNNGA 3 cut(s) 369, 455, 467
Hpy8I GTNNAC 1 cut(s) 80
HpyAV CCTTC 2 cut(s) 292, 301
HpyCH4III ACNGT 2 cut(s) 146, 296
HpyCH4V TGCA 4 cut(s) 19, 132, 237, 320
HpyF10VI GCNNNNNNNGC 2 cut(s) 61, 234
Hsp92II CATG 2 cut(s) 290, 500
Ksp22I TGATCA 1 cut(s) 463
Kzo9I GATC 4 cut(s) 153, 365, 463, 491
LmnI GCTCC 4 cut(s) 173, 284, 331, 444
LpnPI CCDG 7 cut(s) 96, 118, 285, 354, 402, 452, 493
Lsp1109I GCAGC 2 cut(s) 67, 70
LweI GCATC 2 cut(s) 215, 460
MaeIII GTNAC 1 cut(s) 359
MalI GATC 4 cut(s) 155, 367, 465, 493
MboI GATC 4 cut(s) 153, 365, 463, 491
MboII GAAGA 3 cut(s) 229, 409, 445
MflI RGATCY 1 cut(s) 365
MhlI GDGCHC 2 cut(s) 74, 170
MlsI TGGCCA 1 cut(s) 291
MluCI AATT 4 cut(s) 262, 342, 375, 427
MluNI TGGCCA 1 cut(s) 291
MmeI TCCRAC 1 cut(s) 143
MnlI CCTC 4 cut(s) 225, 250, 254, 482
Mox20I TGGCCA 1 cut(s) 291
MscI TGGCCA 1 cut(s) 291
Msp20I TGGCCA 1 cut(s) 291
MspA1I CMGCKG 1 cut(s) 61
MspI CCGG 1 cut(s) 83
MwoI GCNNNNNNNGC 2 cut(s) 61, 234
NcoI CCATGG 1 cut(s) 286
NdeII GATC 4 cut(s) 153, 365, 463, 491
NlaIII CATG 2 cut(s) 290, 500
NlaIV GGNNCC 1 cut(s) 327
NmuCI GTSAC 1 cut(s) 359
NspI RCATGY 1 cut(s) 500
PcsI WCGNNNNNNNCGW 1 cut(s) 85
PflMI CCANNNNNTGG 1 cut(s) 416
PkrI GCNGC 3 cut(s) 57, 60, 63
Psp124BI GAGCTC 1 cut(s) 74
PspN4I GGNNCC 1 cut(s) 327
PsuI RGATCY 1 cut(s) 365
RsaI GTAC 1 cut(s) 298
RsaNI GTAC 1 cut(s) 297
SacI GAGCTC 1 cut(s) 74
SalI GTCGAC 1 cut(s) 78
SatI GCNGC 3 cut(s) 56, 59, 62
Sau3AI GATC 4 cut(s) 153, 365, 463, 491
ScaI AGTACT 1 cut(s) 298
SduI GDGCHC 2 cut(s) 74, 170
SetI ASST 5 cut(s) 16, 74, 125, 236, 449
SfaNI GCATC 2 cut(s) 215, 460
SmlI CTYRAG 1 cut(s) 229
SmoI CTYRAG 1 cut(s) 229
Sse9I AATT 4 cut(s) 262, 342, 375, 427
SsiI CCGC 1 cut(s) 61
SstI GAGCTC 1 cut(s) 74
StyI CCWWGG 2 cut(s) 286, 337
TaaI ACNGT 2 cut(s) 146, 296
TaqI TCGA 2 cut(s) 68, 79
TasI AATT 4 cut(s) 262, 342, 375, 427
TatI WGTACW 1 cut(s) 296
TauI GCSGC 1 cut(s) 64
TscAI CASTG 2 cut(s) 277, 421
TseFI GTSAC 1 cut(s) 359
TseI GCWGC 2 cut(s) 55, 58
Tsp45I GTSAC 1 cut(s) 359
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 2 cut(s) 277, 421
Van91I CCANNNNNTGG 1 cut(s) 416
XceI RCATGY 1 cut(s) 500
XcmI CCANNNNNNNNNTGG 1 cut(s) 344
XmiI GTMKAC 1 cut(s) 79
ZrmI AGTACT 1 cut(s) 298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.