Rh1AG016600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0014784
Physical Location & Seq
Reverse (-)
2815039 .. 2815905
867 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG016600.1

Sequence Viewer

Length: 552 bp
ATGAACTCCCCACGACCCCACCTTTGCAAACCACCCCAAAATATCTCTCTCCCTACCACACAGCAGCAGCGGCAATCTCGAGGATCGAGCGGCTCGTATGACGGGCTGACGGCTATGGCTATGGCTTTGGCTATTTCTCCAACCTTTGGTTGCAGGCCATCAAACGGTTCAAAGATCGTCAAATCGTGCTCCAACATTAGTAGTGATAGCAAAACTTACACATCCCAAATCGGAACGGAGAAGCGATGCTTGAGGTGCAACAACCTCTACACAGACGAGGATAACTCCCCTACTGCTTGCTCCTTCCATGGCCACAGTACTGGAGAGAAGGGACTATTTGCATTGGCTCCACCACACCAAGGAATTGATGGAGAGTGGAGTGACAGGTCTGGAGTAATTGTGTATAGATGGAATGAGAAGAACAAGAGACCAAACACTGGAAGTGGGAATTGGAAGAAAAGATGGAGCTGTTGTCAAGAGTATGATCAGGATGCCACACCCTGTCAAAGAGGATGGCATGTTTCCTATGATGATGGCTTCACTCTATATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

183

Amino Acids

20.32

Weight (kDa)

8.73

Isoelectric Point (pI)

63.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014784)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g00910
malus_domestica MD02G1313500.v1.1
prunus_persica Prupe.2G012100_v2.0.a1 Prupe.2G012100_v2.0.a1
pyrus_communis pycom02g26300
rosa_chinensis RchiOBHm_Chr1g0315801
rosa_laevigata RLG00000030731
rosa_multiflora Rmu_co8267121.1_g000001 Rmu_sc0009816.1_g000004
rosa_roxburghii Rroxscaffold_4G00331430
rosa_rugosa Rorug01G0005600 Rorug01G0005700
rosa_samantha Rh1AG016600 Rh1BG009000 Rh1CG013900 Rh1DG009700
rosa_wichuraiana Rw1G000980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 146, 437
AccBSI CCGCTC 1 cut(s) 90
AciI CCGC 2 cut(s) 70, 90
AclWI GGATC 1 cut(s) 91
AcoI YGGCCR 1 cut(s) 310
AfaI GTAC 1 cut(s) 319
AfiI CCNNNNNNNGG 4 cut(s) 146, 164, 359, 437
AgsI TTSAA 1 cut(s) 171
AjuI GAANNNNNNNTTGG 2 cut(s) 433, 465
AluBI AGCT 1 cut(s) 468
AluI AGCT 1 cut(s) 468
Alw21I GWGCWC 1 cut(s) 191
Alw26I GTCTC 1 cut(s) 421
AlwI GGATC 1 cut(s) 91
Ama87I CYCGRG 1 cut(s) 78
AoxI GGCC 2 cut(s) 155, 310
ApeKI GCWGC 2 cut(s) 64, 67
ArsI GACNNNNNNTTYG 1 cut(s) 38
AvaI CYCGRG 1 cut(s) 78
BalI TGGCCA 1 cut(s) 312
Bbv12I GWGCWC 1 cut(s) 191
BbvI GCAGC 2 cut(s) 76, 79
BccI CCATC 6 cut(s) 166, 362, 402, 456, 507, 527
BceAI ACGGC 1 cut(s) 126
BclI TGATCA 1 cut(s) 484
BcoDI GTCTC 1 cut(s) 421
BisI GCNGC 4 cut(s) 65, 68, 71, 91
BlsI GCNGC 4 cut(s) 66, 69, 72, 92
BmcAI AGTACT 1 cut(s) 319
BmeT110I CYCGRG 1 cut(s) 78
BmiI GGNNCC 1 cut(s) 348
BmsI GCATC 2 cut(s) 236, 481
BplI GAGNNNNNCTC 2 cut(s) 269, 301
BpmI CTGGAG 2 cut(s) 342, 411
BpuEI CTTGAG 1 cut(s) 271
BsaI GGTCTC 1 cut(s) 421
BsaJI CCNNGG 2 cut(s) 307, 358
BsaXI ACNNNNNCTCC 4 cut(s) 384, 414, 457, 487
Bsc4I CCNNNNNNNGG 4 cut(s) 146, 164, 359, 437
Bse1I ACTGG 2 cut(s) 325, 442
BseDI CCNNGG 2 cut(s) 307, 358
BseGI GGATG 3 cut(s) 221, 496, 518
BseLI CCNNNNNNNGG 4 cut(s) 146, 164, 359, 437
BseNI ACTGG 2 cut(s) 325, 442
BseXI GCAGC 2 cut(s) 76, 79
BshFI GGCC 2 cut(s) 157, 312
BsiHKAI GWGCWC 1 cut(s) 191
BsiHKCI CYCGRG 1 cut(s) 78
BslFI GGGAC 1 cut(s) 345
BslI CCNNNNNNNGG 4 cut(s) 146, 164, 359, 437
BsmAI GTCTC 1 cut(s) 421
BsmFI GGGAC 1 cut(s) 345
BsnI GGCC 2 cut(s) 157, 312
Bso31I GGTCTC 1 cut(s) 421
BsoBI CYCGRG 1 cut(s) 78
Bsp1286I GDGCHC 1 cut(s) 191
Bsp143I GATC 3 cut(s) 83, 174, 484
Bsp19I CCATGG 1 cut(s) 307
BspACI CCGC 2 cut(s) 70, 90
BspANI GGCC 2 cut(s) 157, 312
BspLI GGNNCC 1 cut(s) 348
BspPI GGATC 1 cut(s) 91
BspTNI GGTCTC 1 cut(s) 421
BsrBI CCGCTC 1 cut(s) 90
BsrI ACTGG 2 cut(s) 325, 442
BssECI CCNNGG 2 cut(s) 307, 358
BssMI GATC 3 cut(s) 83, 174, 484
BssT1I CCWWGG 2 cut(s) 307, 358
Bst4CI ACNGT 2 cut(s) 167, 317
BstC8I GCNNGC 2 cut(s) 155, 298
BstDSI CCRYGG 1 cut(s) 307
BstF5I GGATG 3 cut(s) 221, 496, 518
BstKTI GATC 3 cut(s) 86, 177, 487
BstMAI GTCTC 1 cut(s) 421
BstMBI GATC 3 cut(s) 83, 174, 484
BstMWI GCNNNNNNNGC 2 cut(s) 70, 255
BstNSI RCATGY 1 cut(s) 521
BstV1I GCAGC 2 cut(s) 76, 79
BstXI CCANNNNNNTGG 1 cut(s) 320
BsuRI GGCC 2 cut(s) 157, 312
BtgI CCRYGG 1 cut(s) 307
BtgZI GCGATG 1 cut(s) 259
BtsCI GGATG 3 cut(s) 221, 496, 518
BtsIMutI CAGTG 1 cut(s) 435
Cac8I GCNNGC 2 cut(s) 155, 298
Csp6I GTAC 1 cut(s) 318
CviAII CATG 2 cut(s) 308, 518
CviQI GTAC 1 cut(s) 318
DpnI GATC 3 cut(s) 85, 176, 486
DpnII GATC 3 cut(s) 83, 174, 484
EaeI YGGCCR 1 cut(s) 310
Eco130I CCWWGG 2 cut(s) 307, 358
Eco31I GGTCTC 1 cut(s) 421
Eco88I CYCGRG 1 cut(s) 78
EcoT14I CCWWGG 2 cut(s) 307, 358
ErhI CCWWGG 2 cut(s) 307, 358
FaeI CATG 2 cut(s) 311, 521
FaiI YATR 9 cut(s) 99, 116, 122, 309, 405, 483, 519, 528, 547
FalI AAGNNNNNCTT 2 cut(s) 233, 265
FaqI GGGAC 1 cut(s) 345
FatI CATG 2 cut(s) 307, 517
FbaI TGATCA 1 cut(s) 484
Fnu4HI GCNGC 4 cut(s) 65, 68, 71, 91
FokI GGATG 3 cut(s) 208, 503, 525
Fsp4HI GCNGC 4 cut(s) 65, 68, 71, 91
GluI GCNGC 4 cut(s) 65, 68, 71, 91
GsuI CTGGAG 2 cut(s) 342, 411
HaeIII GGCC 2 cut(s) 157, 312
Hin1II CATG 2 cut(s) 311, 521
Hpy188I TCNGA 1 cut(s) 233
Hpy188III TCNNGA 4 cut(s) 78, 390, 476, 488
HpyAV CCTTC 2 cut(s) 313, 322
HpyCH4III ACNGT 2 cut(s) 167, 317
HpyCH4V TGCA 4 cut(s) 27, 153, 258, 341
HpyF10VI GCNNNNNNNGC 2 cut(s) 70, 255
Hsp92II CATG 2 cut(s) 311, 521
Ksp22I TGATCA 1 cut(s) 484
Kzo9I GATC 3 cut(s) 83, 174, 484
LmnI GCTCC 4 cut(s) 194, 305, 352, 465
LpnPI CCDG 7 cut(s) 139, 306, 370, 375, 423, 473, 514
Lsp1109I GCAGC 2 cut(s) 76, 79
LweI GCATC 2 cut(s) 236, 481
MaeIII GTNAC 1 cut(s) 380
MalI GATC 3 cut(s) 85, 176, 486
MbiI CCGCTC 1 cut(s) 90
MboI GATC 3 cut(s) 83, 174, 484
MboII GAAGA 2 cut(s) 430, 466
MhlI GDGCHC 1 cut(s) 191
MlsI TGGCCA 1 cut(s) 312
MluCI AATT 3 cut(s) 363, 396, 448
MluNI TGGCCA 1 cut(s) 312
MmeI TCCRAC 2 cut(s) 164, 216
MnlI CCTC 5 cut(s) 74, 246, 271, 275, 503
Mox20I TGGCCA 1 cut(s) 312
MscI TGGCCA 1 cut(s) 312
Msp20I TGGCCA 1 cut(s) 312
MspA1I CMGCKG 1 cut(s) 70
MwoI GCNNNNNNNGC 2 cut(s) 70, 255
NcoI CCATGG 1 cut(s) 307
NdeII GATC 3 cut(s) 83, 174, 484
NlaIII CATG 2 cut(s) 311, 521
NlaIV GGNNCC 1 cut(s) 348
NmuCI GTSAC 1 cut(s) 380
NspI RCATGY 1 cut(s) 521
PaeR7I CTCGAG 1 cut(s) 78
PcsI WCGNNNNNNNCGW 1 cut(s) 92
PflMI CCANNNNNTGG 2 cut(s) 146, 437
PkrI GCNGC 4 cut(s) 66, 69, 72, 92
PspN4I GGNNCC 1 cut(s) 348
RsaI GTAC 1 cut(s) 319
RsaNI GTAC 1 cut(s) 318
SatI GCNGC 4 cut(s) 65, 68, 71, 91
Sau3AI GATC 3 cut(s) 83, 174, 484
ScaI AGTACT 1 cut(s) 319
SduI GDGCHC 1 cut(s) 191
SetI ASST 6 cut(s) 24, 146, 257, 267, 389, 470
SfaNI GCATC 2 cut(s) 236, 481
Sfr274I CTCGAG 1 cut(s) 78
SlaI CTCGAG 1 cut(s) 78
SmlI CTYRAG 2 cut(s) 78, 250
SmoI CTYRAG 2 cut(s) 78, 250
Sse9I AATT 3 cut(s) 363, 396, 448
SsiI CCGC 2 cut(s) 70, 90
StyI CCWWGG 2 cut(s) 307, 358
TaaI ACNGT 2 cut(s) 167, 317
TaqI TCGA 2 cut(s) 79, 86
TasI AATT 3 cut(s) 363, 396, 448
TatI WGTACW 1 cut(s) 317
TauI GCSGC 2 cut(s) 73, 93
TscAI CASTG 1 cut(s) 442
TseFI GTSAC 1 cut(s) 380
TseI GCWGC 2 cut(s) 64, 67
Tsp45I GTSAC 1 cut(s) 380
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 251
TspRI CASTG 1 cut(s) 442
Van91I CCANNNNNTGG 2 cut(s) 146, 437
XceI RCATGY 1 cut(s) 521
XcmI CCANNNNNNNNNTGG 1 cut(s) 365
XhoI CTCGAG 1 cut(s) 78
ZrmI AGTACT 1 cut(s) 319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.