Rh1DG009700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0014784
Physical Location & Seq
Reverse (-)
1577151 .. 1578199
1049 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG009700.1

Sequence Viewer

Length: 579 bp
ATGATTTGGGAAGAAAAAAAAATCAAAATGGGCTTGACCTTCTTTAATGAACTCCCCACCTGTGCAAACCCCAAAATATCTCTCTCCCTACCACACAGCAGCAGCGGCAATCTCGAGGATCGAGCGGCTCATATGACGGCTATGGCTATGGCTTTGGCTATTTCTCCAACCTTTGGTTGCAGGCCATCAAACGGTTCAAAGATCGTCAAATCGTGCTCCAATATTAGTAGTGATAGCAAAACTTACACATCCCAAATCGGAACGGAGAAGCGATGCTTGAGGTGCAACAACCTCTACACAGACGAGGATAACTCCCCTACTGCTTGCTCCTTCCACGGCCACAGTACTGGAGAGAAGGGATTATTTGCATTGGCTCCACCACACCAAGGAATTGATAGAGAGTGGAGTGACAGGTCTGGAGTAATTGTGTATAGATGGAATGAGAAGAACAAGAGACCAAACACTGGAAGTGGGAATTGGAAGAAAAGATGGAGCTGTTGTCAAGAGTATGATCAGGATGCCACACCCTGTCAAAGAGGATGGCATGTTTCCTATGATGATGGCTTCACTCTATATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

192

Amino Acids

21.53

Weight (kDa)

8.35

Isoelectric Point (pI)

52.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014784)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g00910
malus_domestica MD02G1313500.v1.1
prunus_persica Prupe.2G012100_v2.0.a1 Prupe.2G012100_v2.0.a1
pyrus_communis pycom02g26300
rosa_chinensis RchiOBHm_Chr1g0315801
rosa_laevigata RLG00000030731
rosa_multiflora Rmu_co8267121.1_g000001 Rmu_sc0009816.1_g000004
rosa_roxburghii Rroxscaffold_4G00331430
rosa_rugosa Rorug01G0005600 Rorug01G0005700
rosa_samantha Rh1AG016600 Rh1BG009000 Rh1CG013900 Rh1DG009700
rosa_wichuraiana Rw1G000980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 173, 464
AccBSI CCGCTC 1 cut(s) 125
AciI CCGC 2 cut(s) 105, 125
AclWI GGATC 1 cut(s) 126
AcoI YGGCCR 1 cut(s) 337
AfaI GTAC 1 cut(s) 346
AfiI CCNNNNNNNGG 4 cut(s) 173, 191, 386, 464
AgsI TTSAA 1 cut(s) 198
AjuI GAANNNNNNNTTGG 2 cut(s) 460, 492
AluBI AGCT 1 cut(s) 495
AluI AGCT 1 cut(s) 495
Alw21I GWGCWC 1 cut(s) 218
Alw26I GTCTC 1 cut(s) 448
AlwI GGATC 1 cut(s) 126
Ama87I CYCGRG 1 cut(s) 113
AoxI GGCC 2 cut(s) 182, 337
ApeKI GCWGC 2 cut(s) 99, 102
AvaI CYCGRG 1 cut(s) 113
Bbv12I GWGCWC 1 cut(s) 218
BbvI GCAGC 2 cut(s) 111, 114
BccI CCATC 5 cut(s) 193, 429, 483, 534, 554
BceAI ACGGC 2 cut(s) 153, 352
BclI TGATCA 1 cut(s) 511
BcoDI GTCTC 1 cut(s) 448
BisI GCNGC 4 cut(s) 100, 103, 106, 126
BlsI GCNGC 4 cut(s) 101, 104, 107, 127
BmcAI AGTACT 1 cut(s) 346
BmeT110I CYCGRG 1 cut(s) 113
BmiI GGNNCC 1 cut(s) 375
BmsI GCATC 2 cut(s) 263, 508
BplI GAGNNNNNCTC 2 cut(s) 296, 328
BpmI CTGGAG 2 cut(s) 369, 438
BpuEI CTTGAG 1 cut(s) 298
BsaI GGTCTC 1 cut(s) 448
BsaJI CCNNGG 2 cut(s) 334, 385
BsaXI ACNNNNNCTCC 4 cut(s) 411, 441, 484, 514
Bsc4I CCNNNNNNNGG 4 cut(s) 173, 191, 386, 464
Bse1I ACTGG 2 cut(s) 352, 469
BseDI CCNNGG 2 cut(s) 334, 385
BseGI GGATG 3 cut(s) 248, 523, 545
BseLI CCNNNNNNNGG 4 cut(s) 173, 191, 386, 464
BseNI ACTGG 2 cut(s) 352, 469
BseXI GCAGC 2 cut(s) 111, 114
BshFI GGCC 2 cut(s) 184, 339
BsiHKAI GWGCWC 1 cut(s) 218
BsiHKCI CYCGRG 1 cut(s) 113
BslI CCNNNNNNNGG 4 cut(s) 173, 191, 386, 464
BsmAI GTCTC 1 cut(s) 448
BsnI GGCC 2 cut(s) 184, 339
Bso31I GGTCTC 1 cut(s) 448
BsoBI CYCGRG 1 cut(s) 113
Bsp1286I GDGCHC 1 cut(s) 218
Bsp143I GATC 3 cut(s) 118, 201, 511
BspACI CCGC 2 cut(s) 105, 125
BspANI GGCC 2 cut(s) 184, 339
BspLI GGNNCC 1 cut(s) 375
BspPI GGATC 1 cut(s) 126
BspTNI GGTCTC 1 cut(s) 448
BsrBI CCGCTC 1 cut(s) 125
BsrI ACTGG 2 cut(s) 352, 469
BssECI CCNNGG 2 cut(s) 334, 385
BssMI GATC 3 cut(s) 118, 201, 511
BssT1I CCWWGG 1 cut(s) 385
Bst4CI ACNGT 2 cut(s) 194, 344
BstC8I GCNNGC 2 cut(s) 182, 325
BstDSI CCRYGG 1 cut(s) 334
BstF5I GGATG 3 cut(s) 248, 523, 545
BstKTI GATC 3 cut(s) 121, 204, 514
BstMAI GTCTC 1 cut(s) 448
BstMBI GATC 3 cut(s) 118, 201, 511
BstMWI GCNNNNNNNGC 2 cut(s) 105, 282
BstNSI RCATGY 1 cut(s) 548
BstV1I GCAGC 2 cut(s) 111, 114
BstXI CCANNNNNNTGG 1 cut(s) 347
BsuRI GGCC 2 cut(s) 184, 339
BtgI CCRYGG 1 cut(s) 334
BtgZI GCGATG 1 cut(s) 286
BtsCI GGATG 3 cut(s) 248, 523, 545
BtsIMutI CAGTG 1 cut(s) 462
Cac8I GCNNGC 2 cut(s) 182, 325
Csp6I GTAC 1 cut(s) 345
CviAII CATG 1 cut(s) 545
CviQI GTAC 1 cut(s) 345
DpnI GATC 3 cut(s) 120, 203, 513
DpnII GATC 3 cut(s) 118, 201, 511
EaeI YGGCCR 1 cut(s) 337
Eco130I CCWWGG 1 cut(s) 385
Eco31I GGTCTC 1 cut(s) 448
Eco88I CYCGRG 1 cut(s) 113
EcoT14I CCWWGG 1 cut(s) 385
ErhI CCWWGG 1 cut(s) 385
FaeI CATG 1 cut(s) 548
FaiI YATR 9 cut(s) 132, 134, 143, 149, 432, 510, 546, 555, 574
FalI AAGNNNNNCTT 2 cut(s) 260, 292
FatI CATG 1 cut(s) 544
FauNDI CATATG 1 cut(s) 132
FbaI TGATCA 1 cut(s) 511
Fnu4HI GCNGC 4 cut(s) 100, 103, 106, 126
FokI GGATG 3 cut(s) 235, 530, 552
Fsp4HI GCNGC 4 cut(s) 100, 103, 106, 126
GluI GCNGC 4 cut(s) 100, 103, 106, 126
GsuI CTGGAG 2 cut(s) 369, 438
HaeIII GGCC 2 cut(s) 184, 339
Hin1II CATG 1 cut(s) 548
Hpy188I TCNGA 1 cut(s) 260
Hpy188III TCNNGA 4 cut(s) 113, 417, 503, 515
HpyAV CCTTC 3 cut(s) 49, 340, 349
HpyCH4III ACNGT 2 cut(s) 194, 344
HpyCH4V TGCA 4 cut(s) 65, 180, 285, 368
HpyF10VI GCNNNNNNNGC 2 cut(s) 105, 282
Hsp92II CATG 1 cut(s) 548
Ksp22I TGATCA 1 cut(s) 511
Kzo9I GATC 3 cut(s) 118, 201, 511
LmnI GCTCC 4 cut(s) 221, 332, 379, 492
LpnPI CCDG 8 cut(s) 73, 166, 333, 397, 402, 450, 500, 541
Lsp1109I GCAGC 2 cut(s) 111, 114
LweI GCATC 2 cut(s) 263, 508
MaeIII GTNAC 1 cut(s) 407
MalI GATC 3 cut(s) 120, 203, 513
MbiI CCGCTC 1 cut(s) 125
MboI GATC 3 cut(s) 118, 201, 511
MboII GAAGA 3 cut(s) 23, 457, 493
MhlI GDGCHC 1 cut(s) 218
MluCI AATT 3 cut(s) 390, 423, 475
MmeI TCCRAC 1 cut(s) 191
MnlI CCTC 5 cut(s) 109, 273, 298, 302, 530
MseI TTAA 1 cut(s) 45
MspA1I CMGCKG 1 cut(s) 105
MwoI GCNNNNNNNGC 2 cut(s) 105, 282
NdeI CATATG 1 cut(s) 132
NdeII GATC 3 cut(s) 118, 201, 511
NlaIII CATG 1 cut(s) 548
NlaIV GGNNCC 1 cut(s) 375
NmuCI GTSAC 1 cut(s) 407
NspI RCATGY 1 cut(s) 548
PaeR7I CTCGAG 1 cut(s) 113
PflMI CCANNNNNTGG 2 cut(s) 173, 464
PkrI GCNGC 4 cut(s) 101, 104, 107, 127
PspN4I GGNNCC 1 cut(s) 375
RsaI GTAC 1 cut(s) 346
RsaNI GTAC 1 cut(s) 345
SaqAI TTAA 1 cut(s) 45
SatI GCNGC 4 cut(s) 100, 103, 106, 126
Sau3AI GATC 3 cut(s) 118, 201, 511
ScaI AGTACT 1 cut(s) 346
SduI GDGCHC 1 cut(s) 218
SetI ASST 7 cut(s) 41, 62, 173, 284, 294, 416, 497
SfaNI GCATC 2 cut(s) 263, 508
Sfr274I CTCGAG 1 cut(s) 113
SlaI CTCGAG 1 cut(s) 113
SmlI CTYRAG 2 cut(s) 113, 277
SmoI CTYRAG 2 cut(s) 113, 277
Sse9I AATT 3 cut(s) 390, 423, 475
SsiI CCGC 2 cut(s) 105, 125
SspI AATATT 1 cut(s) 223
StyI CCWWGG 1 cut(s) 385
TaaI ACNGT 2 cut(s) 194, 344
TaqI TCGA 2 cut(s) 114, 121
TasI AATT 3 cut(s) 390, 423, 475
TatI WGTACW 1 cut(s) 344
TauI GCSGC 2 cut(s) 108, 128
Tru1I TTAA 1 cut(s) 45
Tru9I TTAA 1 cut(s) 45
TscAI CASTG 1 cut(s) 469
TseFI GTSAC 1 cut(s) 407
TseI GCWGC 2 cut(s) 99, 102
Tsp45I GTSAC 1 cut(s) 407
TspDTI ATGAA 1 cut(s) 63
TspGWI ACGGA 1 cut(s) 278
TspRI CASTG 1 cut(s) 469
Van91I CCANNNNNTGG 2 cut(s) 173, 464
XceI RCATGY 1 cut(s) 548
XhoI CTCGAG 1 cut(s) 113
ZrmI AGTACT 1 cut(s) 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.