Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0015053

Physical Location & Seq

Genomic Coordinates Reverse (-)

1473355 .. 1475595

Gene Structure 2241 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031029

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2241 bp

ATGAACAAGCTAAACAGCTCCTTCCTAAAACCCCAACCTCAGCCTACACCAACTGCCACCACCACCAGAGCTTTCAACGCTATCATCAACCGTCTCTCTTCTCAAGGCTCTCACCATGAAGTCCTTGCCACATACTCGTCTATGCTCAAAACCCACATAGCTCCGGACACCCACACCTTCCCTAATCTGCTCAAAGCTTGCACCTCCCTGAACCTCTTTTGTTATGGTGTCTCGTGTCATCAATGCATTGTTGTTAACGGGTTTTCTTCGGATGCTTACATTGCCTCCTCATTGATCAACTTCTATGCTAAATTTGGTTATGCCCAAAATGCACGCAAGGTGTTTGATACAATGGCGGAAAGAAACGTTGTTCCTTGGACGTCCATTATCGGATGCTATTCGCGTGCCGCAAGTGTTGGAGTTGCGTTTGAGATGTTTGGTGATATGCGGCGTGAGGGAGTTCAACCCAGTTCGGTTACTCTGCTCAGCTTGCTCTCTGGAGCTCTGGAACTTGCCCATGTGCAGTGTTTGCATGGTTGTGCTGTGTTGTATGGTTTTGAGTCTGATATGTCTTTGATGAATTCCATGTTGAATGTGTATTGTAAATGTGGGAGAGTTGAAGATGCTAGGGACTTGTTTGAGTATTTGAATCGAAGAGACATTGTTTCGTGGAACTCATTGATTTCAGGCTATGCACAGAGTGGAAATATCAGAGAAGTGTTCCGGCTTTTATTTAAGATGAGGGTTGAAGGTGTGGAACCTGATAAGCAGACATATGCAACTGCGGTGTCTGTGGCCGCAACACAGCGTAATCTTAAATGGGGGAAGTCTGTGCATGGACAGATTTTGAGAACAGGATTTGAATTGGATTCCCATGTCGAAACAGCTCTTATTGTTATGTACTTGAAGTGCAGGAACATTGATCTTGCGTTTCAGATATTTGAAAGGACAATGCATAAGGATGTGGTTCTGTGGACGGCCATGATCTCAGGGCTTGCGCAAAATGATTCTGCAGACAGGGCTCTAATGGTTTTCTGTCAGATGTTGGAAGCGAGAACAGAACCGTCTAGTGCCACCATAGCTAGTGCTCTTGCAGCTTGTGCGCAACTAGGTTCTATTGATTTAGGAACCTCAATTCATGGTTATGTGTTGAGGCAAGGAATGAGAATTGACATTCCTGCCCAAAACTCCCTTGTCACCATGTATGCAAAGTGTGCACGTTTGGATCAAAGTCGCGCTGTTTTCGAAAATATGAGCAAAAGAGATTTGGTTTCTTGGAATGCTATAGTTGCTGGATATGCTCAAAATGGTCATATATGCGAGGCTCTGGTACTTTTCTCCGAGATGAGGGCAACTCTTCAGAAGCCTGATTCGTTAACTGTGGTCTCCCTTCTCCAAGCTTGTGCTTCCACTGGGGCTCTCCATCAAGGAAAGTGGATCCACAACTTCATTATTAGAAGTTGCCTCAGACCATGCATCTTGGTAGACACAGCTCTGGTCGACATGTACTCAAAATGTGGCGACATGGATAAAGCTCACAAGTGCTTTGTTGAGATGTCTGACCGGGATCTGGTGTCATGGAGCACTATTATTTCTGGTTATGGTTGTCATGGCAAAGGAGAGACTGCTTTGGAATTGTATGCAGAGCTTCTGCAGACTGGAATCAAACCAAATCATGTCATTTTCCTCTCAATTCTTTCAGCTTGTAGTCATAATGGTCTTGTGGACAGGGGTTTGAGCATATACCAGTCGATGACTGAAGATTTTGGTATTGCACCAAGCCTTGAACATCGAGCTTGCATTGTCGATCTCCTCTGTCGAGCTGGAAGGGTGGAAGAGGCATATGATTTCTACAAGAGGGTGTTTCCAGAGCCTGCAGTTGATGTCTTGGGCATACTTCTCGATGCCTGTCGAACCAAGGGCAATGAGGTTCTCGTGGACATTATCGCAGGAGAAATTTTGAGGCTGAGACCTGTGGATGCTGGAAACTATGTGCAATTGGCGCATACCTATGCTTCGATGAACAGATGGGATGGCGTTGGTGAAGCATGGAACCAAATGAAGTCTCTTGGCTTGAAAAAACTCCCTGGTTGGAGTTTTATCGAATTACATGGGACTATCACTACATTCTTCACAGATCACAATTCAAATTCTCAGATTGATGATATAGTGTCACTATTGAAAATTTTGAGCAAGGAAATGAGGAAATCAAGCCTCCGCAGTTGGGATGGCGTTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1068 PPR PPR_2

Protein Analysis

747

Amino Acids

82.71

Weight (kDa)

6.88

Isoelectric Point (pI)

40.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	23 - 67	3.2e-06	PPR repeat family
PPR_2	PF13041	121 - 167	5.3e-08	PPR repeat family
PPR_2	PF13041	219 - 261	6.6e-11	PPR repeat family
PPR	PF01535	222 - 252	6.8e-08	PPR repeat
PPR_2	PF13041	320 - 368	1.1e-06	PPR repeat family
PPR_2	PF13041	422 - 469	3.6e-09	PPR repeat family
PPR_2	PF13041	523 - 570	5.2e-07	PPR repeat family
E_motif	PF20431	652 - 702	2.7e-07	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015053)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04370
fragaria_vesca	FvH4_3g01610
malus_domestica	MD10G1325500.v1.1
prunus_persica	Prupe.4G016600_v2.0.a1
pyrus_communis	pycom10g27520
rosa_chinensis	RchiOBHm_Chr5g0002401
rosa_laevigata	RLG00000031029
rosa_multiflora	Rmu_co8285719.1_g000001 Rmu_sc0001717.1_g000003
rosa_roxburghii	Rroxscaffold_1G00073450
rosa_rugosa	Rorug04G0396000
rosa_samantha	Rh5AG018800 Rh5BG021600 Rh5CG020700 Rh5DG019800
rosa_wichuraiana	Rw5G001760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	383
Acc16I	TGCGCA	2 cut(s)	999, 1104
AccI	GTMKAC	2 cut(s)	1485, 1500
AccII	CGCG	2 cut(s)	403, 1236
AccIII	TCCGGA	1 cut(s)	163
AciI	CCGC	6 cut(s)	356, 408, 448, 785, 798, 2218
AclI	AACGTT	1 cut(s)	366
AclWI	GGATC	4 cut(s)	1233, 1432, 1445, 1575
AcoI	YGGCCR	2 cut(s)	795, 978
AcsI	RAATTY	5 cut(s)	311, 580, 1956, 2149, 2184
AcuI	CTGAAG	2 cut(s)	1343, 1779
AcyI	GRCGYC	1 cut(s)	380
AdeI	CACNNNGTG	1 cut(s)	701
AfaI	GTAC	3 cut(s)	902, 1332, 1508
AfiI	CCNNNNNNNGG	3 cut(s)	1347, 1570, 2224
AflIII	ACRYGT	1 cut(s)	1503
AjnI	CCWGG	1 cut(s)	2086
Alw21I	GWGCWC	4 cut(s)	505, 1090, 1219, 1586
Alw26I	GTCTC	7 cut(s)	98, 235, 651, 1390, 1616, 1963, 2070
Alw44I	GTGCAC	1 cut(s)	1215
AlwI	GGATC	4 cut(s)	1233, 1432, 1445, 1575
AlwNI	CAGNNNCTG	1 cut(s)	1874
Aor13HI	TCCGGA	1 cut(s)	163
AoxI	GGCC	2 cut(s)	795, 978
ApaLI	GTGCAC	1 cut(s)	1215
ApeKI	GCWGC	1 cut(s)	1094
ApoI	RAATTY	5 cut(s)	311, 580, 1956, 2149, 2184
AspLEI	GCGC	4 cut(s)	1000, 1105, 1238, 2005
AsuC2I	CCSGG	1 cut(s)	1565
AsuHPI	GGTGA	4 cut(s)	104, 452, 1189, 2054
AsuII	TTCGAA	1 cut(s)	1245
BaeGI	GKGCMC	1 cut(s)	1219
BamHI	GGATCC	1 cut(s)	1437
BanII	GRGCYC	3 cut(s)	505, 1024, 1420
BauI	CACGAG	2 cut(s)	232, 1934
Bbv12I	GWGCWC	4 cut(s)	505, 1090, 1219, 1586
BbvCI	CCTCAGC	1 cut(s)	39
BbvI	GCAGC	1 cut(s)	1106
BccI	CCATC	4 cut(s)	1431, 2022, 2027, 2222
BceAI	ACGGC	1 cut(s)	993
BcgI	CGANNNNNNTGC	2 cut(s)	1882, 1916
BciT130I	CCWGG	1 cut(s)	2088
BclI	TGATCA	1 cut(s)	294
BcnI	CCSGG	1 cut(s)	1565
BcoDI	GTCTC	7 cut(s)	98, 235, 651, 1390, 1616, 1963, 2070
BfaI	CTAG	4 cut(s)	627, 1068, 1083, 1109
BfmI	CTRYAG	4 cut(s)	1011, 1284, 1652, 1875
BisI	GCNGC	4 cut(s)	408, 449, 798, 1095
BlpI	GCTNAGC	1 cut(s)	485
BlsI	GCNGC	4 cut(s)	409, 450, 799, 1096
Bme1390I	CCNGG	2 cut(s)	1565, 2088
BmiI	GGNNCC	4 cut(s)	759, 1129, 1439, 2054
BmrFI	CCNGG	2 cut(s)	1565, 2088
BmrI	ACTGGG	2 cut(s)	462, 1422
BmsI	GCATC	6 cut(s)	262, 383, 613, 1485, 1894, 1969
BmuI	ACTGGG	2 cut(s)	462, 1422
BplI	GAGNNNNNCTC	2 cut(s)	1339, 1371
BpmI	CTGGAG	1 cut(s)	519
Bpu10I	CCTNAGC	1 cut(s)	39
Bpu1102I	GCTNAGC	1 cut(s)	485
Bpu14I	TTCGAA	1 cut(s)	1245
BpuEI	CTTGAG	1 cut(s)	87
BpuMI	CCSGG	1 cut(s)	1565
BsaHI	GRCGYC	1 cut(s)	380
BsaI	GGTCTC	2 cut(s)	1390, 1963
BsaJI	CCNNGG	3 cut(s)	374, 1917, 2086
BsaWI	WCCGGW	1 cut(s)	163
BsaXI	ACNNNNNCTCC	2 cut(s)	269, 299
Bsc4I	CCNNNNNNNGG	3 cut(s)	1347, 1570, 2224
Bse1I	ACTGG	4 cut(s)	468, 1417, 1663, 1747
Bse3DI	GCAATG	2 cut(s)	279, 1930
BseAI	TCCGGA	1 cut(s)	163
BseBI	CCWGG	1 cut(s)	2088
BseDI	CCNNGG	3 cut(s)	374, 1917, 2086
BseGI	GGATG	6 cut(s)	277, 398, 967, 1984, 2038, 2233
BseLI	CCNNNNNNNGG	3 cut(s)	1347, 1570, 2224
BseMI	GCAATG	2 cut(s)	279, 1930
BseMII	CTCAG	6 cut(s)	53, 499, 1002, 1480, 1958, 2168
BseNI	ACTGG	4 cut(s)	468, 1417, 1663, 1747
BseRI	GAGGAG	2 cut(s)	277, 1802
BseSI	GKGCMC	1 cut(s)	1219
BseXI	GCAGC	1 cut(s)	1106
BsgI	GTGCAG	2 cut(s)	542, 931
Bsh1236I	CGCG	2 cut(s)	403, 1236
BshFI	GGCC	2 cut(s)	797, 980
BsiHKAI	GWGCWC	4 cut(s)	505, 1090, 1219, 1586
BsiSI	CCGG	3 cut(s)	164, 724, 1564
BslFI	GGGAC	2 cut(s)	644, 2128
BslI	CCNNNNNNNGG	3 cut(s)	1347, 1570, 2224
BsmAI	GTCTC	7 cut(s)	98, 235, 651, 1390, 1616, 1963, 2070
BsmBI	CGTCTC	1 cut(s)	98
BsmFI	GGGAC	2 cut(s)	644, 2128
BsmI	GAATGC	1 cut(s)	1285
BsnI	GGCC	2 cut(s)	797, 980
Bso31I	GGTCTC	2 cut(s)	1390, 1963
Bsp119I	TTCGAA	1 cut(s)	1245
Bsp1286I	GDGCHC	6 cut(s)	505, 1024, 1090, 1219, 1420, 1586
Bsp13I	TCCGGA	1 cut(s)	163
Bsp143I	GATC	8 cut(s)	294, 922, 984, 1225, 1437, 1567, 1807, 2137
Bsp1720I	GCTNAGC	1 cut(s)	485
BspACI	CCGC	6 cut(s)	356, 408, 448, 785, 798, 2218
BspANI	GGCC	2 cut(s)	797, 980
BspCNI	CTCAG	6 cut(s)	52, 498, 1001, 1479, 1959, 2167
BspEI	TCCGGA	1 cut(s)	163
BspFNI	CGCG	2 cut(s)	403, 1236
BspLI	GGNNCC	4 cut(s)	759, 1129, 1439, 2054
BspMAI	CTGCAG	3 cut(s)	1015, 1656, 1879
BspPI	GGATC	4 cut(s)	1233, 1432, 1445, 1575
BspT104I	TTCGAA	1 cut(s)	1245
BspTNI	GGTCTC	2 cut(s)	1390, 1963
BsrDI	GCAATG	2 cut(s)	279, 1930
BsrI	ACTGG	4 cut(s)	468, 1417, 1663, 1747
BssECI	CCNNGG	3 cut(s)	374, 1917, 2086
BssMI	GATC	8 cut(s)	294, 922, 984, 1225, 1437, 1567, 1807, 2137
BssNI	GRCGYC	1 cut(s)	380
BssSI	CACGAG	2 cut(s)	232, 1934
BssT1I	CCWWGG	2 cut(s)	374, 1917
Bst2BI	CACGAG	2 cut(s)	232, 1934
Bst2UI	CCWGG	1 cut(s)	2088
Bst4CI	ACNGT	3 cut(s)	92, 1065, 1381
Bst6I	CTCTTC	4 cut(s)	103, 649, 1362, 1830
BstACI	GRCGYC	1 cut(s)	380
BstAPI	GCANNNNNTGC	3 cut(s)	529, 1100, 1214
BstBI	TTCGAA	1 cut(s)	1245
BstC8I	GCNNGC	7 cut(s)	199, 334, 405, 491, 996, 1798, 1875
BstDEI	CTNAG	6 cut(s)	39, 485, 988, 1466, 1967, 2154
BstF5I	GGATG	6 cut(s)	277, 398, 967, 1984, 2038, 2233
BstFNI	CGCG	2 cut(s)	403, 1236
BstHHI	GCGC	4 cut(s)	1000, 1105, 1238, 2005
BstKTI	GATC	8 cut(s)	297, 925, 987, 1228, 1440, 1570, 1810, 2140
BstMAI	GTCTC	7 cut(s)	98, 235, 651, 1390, 1616, 1963, 2070
BstMBI	GATC	8 cut(s)	294, 922, 984, 1225, 1437, 1567, 1807, 2137
BstNI	CCWGG	1 cut(s)	2088
BstNSI	RCATGY	1 cut(s)	1507
BstSCI	CCNGG	2 cut(s)	1563, 2086
BstSFI	CTRYAG	4 cut(s)	1011, 1284, 1652, 1875
BstSLI	GKGCMC	1 cut(s)	1219
BstUI	CGCG	2 cut(s)	403, 1236
BstV1I	GCAGC	1 cut(s)	1106
BstX2I	RGATCY	2 cut(s)	1437, 1567
BstYI	RGATCY	2 cut(s)	1437, 1567
BsuRI	GGCC	2 cut(s)	797, 980
BtsCI	GGATG	6 cut(s)	277, 398, 967, 1984, 2038, 2233
BtsI	GCAGTG	1 cut(s)	530
BtsIMutI	CAGTG	2 cut(s)	530, 1410
Cac8I	GCNNGC	7 cut(s)	199, 334, 405, 491, 996, 1798, 1875
CaiI	CAGNNNCTG	1 cut(s)	1874
CfoI	GCGC	4 cut(s)	1000, 1105, 1238, 2005
Csp6I	GTAC	3 cut(s)	901, 1331, 1507
CspCI	CAANNNNNGTGG	2 cut(s)	1415, 1450
CviQI	GTAC	3 cut(s)	901, 1331, 1507
DdeI	CTNAG	6 cut(s)	39, 485, 988, 1466, 1967, 2154
DpnI	GATC	8 cut(s)	296, 924, 986, 1227, 1439, 1569, 1809, 2139
DpnII	GATC	8 cut(s)	294, 922, 984, 1225, 1437, 1567, 1807, 2137
DraIII	CACNNNGTG	1 cut(s)	701
EaeI	YGGCCR	2 cut(s)	795, 978
Eam1104I	CTCTTC	4 cut(s)	103, 649, 1362, 1830
EarI	CTCTTC	4 cut(s)	103, 649, 1362, 1830
EciI	GGCGGA	1 cut(s)	371
Ecl136II	GAGCTC	1 cut(s)	503
Eco130I	CCWWGG	2 cut(s)	374, 1917
Eco24I	GRGCYC	3 cut(s)	505, 1024, 1420
Eco31I	GGTCTC	2 cut(s)	1390, 1963
Eco53kI	GAGCTC	1 cut(s)	503
Eco57I	CTGAAG	2 cut(s)	1343, 1779
EcoICRI	GAGCTC	1 cut(s)	503
EcoRI	GAATTC	1 cut(s)	580
EcoRII	CCWGG	1 cut(s)	2086
EcoT14I	CCWWGG	2 cut(s)	374, 1917
EcoT22I	ATGCAT	3 cut(s)	248, 957, 1478
EcoT38I	GRGCYC	3 cut(s)	505, 1024, 1420
ErhI	CCWWGG	2 cut(s)	374, 1917
Esp3I	CGTCTC	1 cut(s)	98
FaqI	GGGAC	2 cut(s)	644, 2128
FauNDI	CATATG	2 cut(s)	775, 1843
FbaI	TGATCA	1 cut(s)	294
FblI	GTMKAC	2 cut(s)	1485, 1500
Fnu4HI	GCNGC	4 cut(s)	408, 449, 798, 1095
FokI	GGATG	5 cut(s)	284, 405, 974, 1991, 2045
FriOI	GRGCYC	3 cut(s)	505, 1024, 1420
Fsp4HI	GCNGC	4 cut(s)	408, 449, 798, 1095
FspBI	CTAG	4 cut(s)	627, 1068, 1083, 1109
FspI	TGCGCA	2 cut(s)	999, 1104
GlaI	GCGC	4 cut(s)	999, 1104, 1237, 2004
GluI	GCNGC	4 cut(s)	408, 449, 798, 1095
GsuI	CTGGAG	1 cut(s)	519
HaeIII	GGCC	2 cut(s)	797, 980
HapII	CCGG	3 cut(s)	164, 724, 1564
HhaI	GCGC	4 cut(s)	1000, 1105, 1238, 2005
Hin1I	GRCGYC	1 cut(s)	380
Hin6I	GCGC	4 cut(s)	998, 1103, 1236, 2003
HinP1I	GCGC	4 cut(s)	998, 1103, 1236, 2003
HincII	GTYRAC	3 cut(s)	256, 1377, 1501
HindII	GTYRAC	3 cut(s)	256, 1377, 1501
HindIII	AAGCTT	2 cut(s)	195, 1398
HinfI	GANTC	6 cut(s)	560, 649, 869, 1007, 1370, 1662
HpaI	GTTAAC	2 cut(s)	256, 1377
HpaII	CCGG	3 cut(s)	164, 724, 1564
HphI	GGTGA	4 cut(s)	104, 452, 1189, 2054
Hpy166II	GTNNAC	8 cut(s)	256, 975, 1217, 1377, 1486, 1501, 1726, 1939
Hpy188III	TCNNGA	5 cut(s)	164, 498, 506, 1868, 1901
Hpy8I	GTNNAC	8 cut(s)	256, 975, 1217, 1377, 1486, 1501, 1726, 1939
HpyAV	CCTTC	5 cut(s)	31, 187, 743, 1400, 1821
HpyCH4III	ACNGT	3 cut(s)	92, 1065, 1381
HpyCH4IV	ACGT	3 cut(s)	366, 380, 1219
HpyF3I	CTNAG	6 cut(s)	39, 485, 988, 1466, 1967, 2154
HpySE526I	ACGT	3 cut(s)	366, 380, 1219
Hsp92I	GRCGYC	1 cut(s)	380
HspAI	GCGC	4 cut(s)	998, 1103, 1236, 2003
Kpn2I	TCCGGA	1 cut(s)	163
Ksp22I	TGATCA	1 cut(s)	294
KspAI	GTTAAC	2 cut(s)	256, 1377
Kzo9I	GATC	8 cut(s)	294, 922, 984, 1225, 1437, 1567, 1807, 2137
LmnI	GCTCC	4 cut(s)	23, 166, 500, 1581
Lsp1109I	GCAGC	1 cut(s)	1106
LweI	GCATC	6 cut(s)	262, 383, 613, 1485, 1894, 1969
MaeI	CTAG	4 cut(s)	627, 1068, 1083, 1109
MaeII	ACGT	3 cut(s)	366, 380, 1219
MaeIII	GTNAC	3 cut(s)	475, 1195, 2172
MalI	GATC	8 cut(s)	296, 924, 986, 1227, 1439, 1569, 1809, 2139
MboI	GATC	8 cut(s)	294, 922, 984, 1225, 1437, 1567, 1807, 2137
MboII	GAAGA	8 cut(s)	90, 258, 632, 666, 1349, 1772, 1847, 2122
MfeI	CAATTG	1 cut(s)	1997
MflI	RGATCY	2 cut(s)	1437, 1567
MhlI	GDGCHC	6 cut(s)	505, 1024, 1090, 1219, 1420, 1586
MlyI	GAGTC	1 cut(s)	569
MmeI	TCCRAC	3 cut(s)	397, 1026, 2072
Mph1103I	ATGCAT	3 cut(s)	248, 957, 1478
MroI	TCCGGA	1 cut(s)	163
MseI	TTAA	4 cut(s)	255, 735, 816, 1376
MslI	CAYNNNNRTG	4 cut(s)	537, 960, 1143, 2010
MspI	CCGG	3 cut(s)	164, 724, 1564
MspR9I	CCNGG	2 cut(s)	1565, 2088
MunI	CAATTG	1 cut(s)	1997
Mva1269I	GAATGC	1 cut(s)	1285
MvaI	CCWGG	1 cut(s)	2088
MvnI	CGCG	2 cut(s)	403, 1236
NciI	CCSGG	1 cut(s)	1565
NdeI	CATATG	2 cut(s)	775, 1843
NdeII	GATC	8 cut(s)	294, 922, 984, 1225, 1437, 1567, 1807, 2137
NlaIV	GGNNCC	4 cut(s)	759, 1129, 1439, 2054
NmuCI	GTSAC	2 cut(s)	1195, 2172
NsbI	TGCGCA	2 cut(s)	999, 1104
NsiI	ATGCAT	3 cut(s)	248, 957, 1478
NspI	RCATGY	1 cut(s)	1507
NspV	TTCGAA	1 cut(s)	1245
PciI	ACATGT	1 cut(s)	1503
PctI	GAATGC	1 cut(s)	1285
PfeI	GAWTC	5 cut(s)	649, 869, 1007, 1370, 1662
PkrI	GCNGC	4 cut(s)	409, 450, 799, 1096
PleI	GAGTC	1 cut(s)	568
PpsI	GAGTC	1 cut(s)	568
PscI	ACATGT	1 cut(s)	1503
Psp124BI	GAGCTC	1 cut(s)	505
Psp1406I	AACGTT	1 cut(s)	366
Psp6I	CCWGG	1 cut(s)	2086
PspGI	CCWGG	1 cut(s)	2086
PspN4I	GGNNCC	4 cut(s)	759, 1129, 1439, 2054
PstI	CTGCAG	3 cut(s)	1015, 1656, 1879
PstNI	CAGNNNCTG	1 cut(s)	1874
PsuI	RGATCY	2 cut(s)	1437, 1567
RsaI	GTAC	3 cut(s)	902, 1332, 1508
RsaNI	GTAC	3 cut(s)	901, 1331, 1507
RseI	CAYNNNNRTG	4 cut(s)	537, 960, 1143, 2010
SacI	GAGCTC	1 cut(s)	505
SalI	GTCGAC	1 cut(s)	1499
SaqAI	TTAA	4 cut(s)	255, 735, 816, 1376
SatI	GCNGC	4 cut(s)	408, 449, 798, 1095
Sau3AI	GATC	8 cut(s)	294, 922, 984, 1225, 1437, 1567, 1807, 2137
SchI	GAGTC	1 cut(s)	569
ScrFI	CCNGG	2 cut(s)	1565, 2088
SduI	GDGCHC	6 cut(s)	505, 1024, 1090, 1219, 1420, 1586
SfaNI	GCATC	6 cut(s)	262, 383, 613, 1485, 1894, 1969
SfcI	CTRYAG	4 cut(s)	1011, 1284, 1652, 1875
SfuI	TTCGAA	1 cut(s)	1245
SmiMI	CAYNNNNRTG	4 cut(s)	537, 960, 1143, 2010
SmlI	CTYRAG	1 cut(s)	102
SmoI	CTYRAG	1 cut(s)	102
SsiI	CCGC	6 cut(s)	356, 408, 448, 785, 798, 2218
SspMI	CTAG	4 cut(s)	627, 1068, 1083, 1109
SstI	GAGCTC	1 cut(s)	505
StyD4I	CCNGG	2 cut(s)	1563, 2086
StyI	CCWWGG	2 cut(s)	374, 1917
TaaI	ACNGT	3 cut(s)	92, 1065, 1381
TaiI	ACGT	3 cut(s)	369, 383, 1222
TatI	WGTACW	2 cut(s)	900, 1506
TauI	GCSGC	3 cut(s)	410, 451, 800
TfiI	GAWTC	5 cut(s)	649, 869, 1007, 1370, 1662
Tru1I	TTAA	4 cut(s)	255, 735, 816, 1376
Tru9I	TTAA	4 cut(s)	255, 735, 816, 1376
TscAI	CASTG	2 cut(s)	530, 1417
TseFI	GTSAC	2 cut(s)	1195, 2172
TseI	GCWGC	1 cut(s)	1094
Tsp45I	GTSAC	2 cut(s)	1195, 2172
TspDTI	ATGAA	7 cut(s)	17, 132, 593, 1127, 1438, 2036, 2075
TspRI	CASTG	2 cut(s)	530, 1417
VneI	GTGCAC	1 cut(s)	1215
XapI	RAATTY	5 cut(s)	311, 580, 1956, 2149, 2184
XceI	RCATGY	1 cut(s)	1507
XmiI	GTMKAC	2 cut(s)	1485, 1500
XspI	CTAG	4 cut(s)	627, 1068, 1083, 1109
ZraI	GACGTC	1 cut(s)	381
Zsp2I	ATGCAT	3 cut(s)	248, 957, 1478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.