Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0015053

Physical Location & Seq

Genomic Coordinates Forward (+)

94309262 .. 94311511

Gene Structure 2250 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00073450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2250 bp

ATGAACAAGCTAAACAGCTCCTTCTTAAACCCCTTAAAACCCCAACCTCAGCATACACCAACTGCCACCACCACCAGAGCTTTCAACGCTATCATCAACCGTCTCTCTTCTCAAGGCTCTCACCATGAAGTCCTTGCCACATACTCCTCTATGCTCAAAACCCACATAGCTCCGGATACCCACACCTTCCCTAATCTGCTCAAAGCTTGCACCTCCCTGAACCTCTTTTGTGATGGTGTCTCGTGTCATCAATGCATTGTGGTTAATGGGTTTTCTTCGGACTCTTACATTGCCTCTTCATTGATCAACTTCTATGCGAAATTTGGTCATGCCCAAAATGCACGCAAGGTGTTCGATACAATGGCGGAAAGAAACGTTGTTCCTTGGACTTCCATTATCGGATGCTACTCGCGTGCCGGAAGTGTTGGAGTTGCGTTTGAGTTGTTTGGTGATATGCGGCGTGAGGGAGTTCAACCCAGTTCGGTTACTCTGCTCAGCTTGCTCTCTGGAGCTCCGGAACTTGCCCATGTGCAGTGTTTGCATGGTTGTGCTGTGTTGTATGGTTTTGAGTCTGATATGTCTTTGATGAATTCCATGTTGAATGTGTATTGTAAATGTGGGAGAGTTGAAGATGCTAGGGACTTTTTTGAGTATTTGAATCGAAGAGACATTGTTTCGTGGAACTCATTGATTTCAGGCTATGCACAGAGTGGAAACATCAGAGAAGTATTCCAGCTTTTGTTTAAGATGAGGGTTGAAGGTGTGGAACCTGATAAGCAGACATACGCGACTGCGGTGTCTGTGGCTGCAACACAGTGTAATCTTAAATTGGGAAAGTCTGTGCATGGACAGATTTTGAGAACAGGATTTGAATTGGATTCCCATGTCGAAACAGCGCTTATTGTTATGTACTTGAAGTGCAGGAATATTGATCTTGCATTTCGTGTATTTGAAAGGACAATGCAGAAGGATGTGGTTCTGTGGACGGCTATGATCTCAGGGCTTGCGCAAAATGATTCTGCAGACAGGGCTCTAATGGTTTTCTGTCAGATGTTGGAATCGAGGACAGAACCGTCTAGTTCCACCATAGCTAGTGCTCTTGCAGCTTGTGCGCAACTAGGTTCTTTTGAGCTAGGAACCTCAATTCACGGTTATGTGTTGAGGCAAGGAATGAGACTTGACATTCCTGCCCAAAACTCCCTTGTCACCATGTATGCAAAGTGTGCACGTTTGGATCAAAGTCGCGCTGTTTTCGAAAATATGAGCAAAAGAGATTTGGTTTCTTGGAATGCTATAGTTGCTGGATATGCTCAAAATGGTCATCTATCTGAGGCTCTAGTTCTTTTCTCTGAGATGAGGGCAATCCTTCAGAAGCCTGATTCGTTGACTGTGGTCTCCCTTCTCCAAGCTTGTGCTTCCACTGGAGCGCTCCATCAAGGAAAGTGGATCCACAACTTTATTATTAGAAGTTTCCTCAGACCATGCATCTTGGTGGACACAGCTCTGGTTGATATGTACTCAAAATGCGGTGACATGGATAAAGCTCACAAGTGCTTTGTTGAGATGTCTGACCGGGATCTGGTGTCATGGAGCACTATTATTTCTGGTTATGGTTGTCATGGCAAAGCAGAGACTGCTTTGGAGTTGTATGCAGAGCTTCTGCAGACTGGAATCAAACCAAATCATGTCATTTTCCTCTCAATTCTTTCAGCTTGTAGTCATAATGGTCTTGTTGACAAGGGTTTGAGCATATACCAGTCGATGACTGAAGATTTTGGTATTGCACCAAGCCTTGAACATCGAGCTTGCATTGTCGATCTCCTCTGTCGAGCTGGAAGGGTGGAAGAGGCATATGATTTCTACAAGAGGGTGTTTCCAGAGCCTGCAGTTGATGTCTTGGGCATACTTCTCGATGCCTGTCGAACCAAGGGCAATGAGGTTCTCGTGGGCATTATTGCAGGAGAAATTTTGAGGCTGAGACCTGTGGATGCTGGAAACTATGTGCAATTGGCGCATACCTATGCTTCGATGAACAGATGGGATGGCGTTGGTGAAGCATGGAACCAAATGAAGTCTCTTGGCTTGAAAAAACTCCCTGGTTGGAGTTTTATCGAATTACATGGGACTATCACTACATTCTTCACAGATCACAATTCAAATTCTCAGATTGATGATATAGTGTCACTATTGAAAATTTTGAGCAAGGAAATGAGGAAATCAAGCCTCCGCAGTTGGGATGGCGTTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1068 PPR PPR_2

Protein Analysis

749

Amino Acids

82.9

Weight (kDa)

6.76

Isoelectric Point (pI)

39.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	26 - 70	3.2e-06	PPR repeat family
PPR_2	PF13041	124 - 170	1.8e-09	PPR repeat family
PPR_2	PF13041	222 - 264	6.8e-11	PPR repeat family
PPR	PF01535	225 - 255	6.4e-08	PPR repeat
PPR_2	PF13041	323 - 371	9.6e-07	PPR repeat family
PPR_2	PF13041	425 - 472	3.4e-09	PPR repeat family
PPR	PF01535	427 - 453	2.2e-06	PPR repeat
PPR_2	PF13041	526 - 563	4.5e-06	PPR repeat family
E_motif	PF20431	656 - 705	2.3e-07	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0015053)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04370
fragaria_vesca	FvH4_3g01610
malus_domestica	MD10G1325500.v1.1
prunus_persica	Prupe.4G016600_v2.0.a1
pyrus_communis	pycom10g27520
rosa_chinensis	RchiOBHm_Chr5g0002401
rosa_laevigata	RLG00000031029
rosa_multiflora	Rmu_co8285719.1_g000001 Rmu_sc0001717.1_g000003
rosa_roxburghii	Rroxscaffold_1G00073450
rosa_rugosa	Rorug04G0396000
rosa_samantha	Rh5AG018800 Rh5BG021600 Rh5CG020700 Rh5DG019800
rosa_wichuraiana	Rw5G001760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	796, 1072
Acc16I	TGCGCA	2 cut(s)	1008, 1113
AccII	CGCG	3 cut(s)	412, 788, 1245
AccIII	TCCGGA	2 cut(s)	172, 514
AciI	CCGC	5 cut(s)	365, 457, 794, 1527, 2227
AclI	AACGTT	1 cut(s)	375
AclWI	GGATC	4 cut(s)	1242, 1441, 1454, 1584
AcsI	RAATTY	5 cut(s)	320, 589, 1965, 2158, 2193
AcuI	CTGAAG	2 cut(s)	1352, 1788
AdeI	CACNNNGTG	1 cut(s)	710
AfaI	GTAC	2 cut(s)	911, 1517
AfeI	AGCGCT	2 cut(s)	897, 1428
AfiI	CCNNNNNNNGG	2 cut(s)	1579, 2233
AjnI	CCWGG	1 cut(s)	2095
Alw21I	GWGCWC	4 cut(s)	514, 1099, 1228, 1595
Alw26I	GTCTC	8 cut(s)	107, 244, 660, 1168, 1399, 1625, 1972, 2079
Alw44I	GTGCAC	1 cut(s)	1224
AlwI	GGATC	4 cut(s)	1242, 1441, 1454, 1584
AlwNI	CAGNNNCTG	2 cut(s)	1634, 1883
Aor13HI	TCCGGA	2 cut(s)	172, 514
Aor51HI	AGCGCT	2 cut(s)	897, 1428
ApaLI	GTGCAC	1 cut(s)	1224
ApeKI	GCWGC	2 cut(s)	806, 1103
ApoI	RAATTY	5 cut(s)	320, 589, 1965, 2158, 2193
AspLEI	GCGC	6 cut(s)	898, 1009, 1114, 1247, 1429, 2014
AsuC2I	CCSGG	1 cut(s)	1574
AsuHPI	GGTGA	5 cut(s)	113, 461, 1198, 1541, 2063
AsuII	TTCGAA	1 cut(s)	1254
BaeGI	GKGCMC	1 cut(s)	1228
BamHI	GGATCC	1 cut(s)	1446
BanII	GRGCYC	2 cut(s)	514, 1033
BauI	CACGAG	2 cut(s)	241, 1943
Bbv12I	GWGCWC	4 cut(s)	514, 1099, 1228, 1595
BbvCI	CCTCAGC	1 cut(s)	48
BbvI	GCAGC	2 cut(s)	793, 1115
BccI	CCATC	5 cut(s)	227, 1440, 2031, 2036, 2231
BceAI	ACGGC	1 cut(s)	1002
BcgI	CGANNNNNNTGC	4 cut(s)	334, 368, 1891, 1925
BciT130I	CCWGG	1 cut(s)	2097
BciVI	GTATCC	1 cut(s)	169
BclI	TGATCA	1 cut(s)	303
BcnI	CCSGG	1 cut(s)	1574
BcoDI	GTCTC	8 cut(s)	107, 244, 660, 1168, 1399, 1625, 1972, 2079
BfaI	CTAG	6 cut(s)	636, 1077, 1092, 1118, 1133, 1337
BfmI	CTRYAG	4 cut(s)	1020, 1293, 1661, 1884
BfoI	RGCGCY	2 cut(s)	899, 1430
BfuI	GTATCC	1 cut(s)	169
BisI	GCNGC	3 cut(s)	458, 807, 1104
BlpI	GCTNAGC	1 cut(s)	494
BlsI	GCNGC	3 cut(s)	459, 808, 1105
Bme1390I	CCNGG	2 cut(s)	1574, 2097
BmiI	GGNNCC	4 cut(s)	768, 1138, 1448, 2063
BmrFI	CCNGG	2 cut(s)	1574, 2097
BmrI	ACTGGG	1 cut(s)	471
BmsI	GCATC	5 cut(s)	392, 622, 1494, 1903, 1978
BmuI	ACTGGG	1 cut(s)	471
BoxI	GACNNNNGTC	1 cut(s)	1391
BpmI	CTGGAG	2 cut(s)	528, 1443
Bpu10I	CCTNAGC	1 cut(s)	48
Bpu1102I	GCTNAGC	1 cut(s)	494
Bpu14I	TTCGAA	1 cut(s)	1254
BpuEI	CTTGAG	1 cut(s)	96
BpuMI	CCSGG	1 cut(s)	1574
BsaI	GGTCTC	2 cut(s)	1399, 1972
BsaJI	CCNNGG	3 cut(s)	383, 1926, 2095
BsaWI	WCCGGW	2 cut(s)	172, 514
Bsc4I	CCNNNNNNNGG	2 cut(s)	1579, 2233
Bse1I	ACTGG	4 cut(s)	477, 1426, 1672, 1756
Bse3DI	GCAATG	2 cut(s)	288, 1939
BseAI	TCCGGA	2 cut(s)	172, 514
BseBI	CCWGG	1 cut(s)	2097
BseDI	CCNNGG	3 cut(s)	383, 1926, 2095
BseGI	GGATG	5 cut(s)	407, 976, 1993, 2047, 2242
BseLI	CCNNNNNNNGG	2 cut(s)	1579, 2233
BseMI	GCAATG	2 cut(s)	288, 1939
BseMII	CTCAG	8 cut(s)	62, 508, 1011, 1320, 1341, 1489, 1967, 2177
BseNI	ACTGG	4 cut(s)	477, 1426, 1672, 1756
BseRI	GAGGAG	2 cut(s)	136, 1811
BseSI	GKGCMC	1 cut(s)	1228
BseXI	GCAGC	2 cut(s)	793, 1115
BsgI	GTGCAG	2 cut(s)	551, 940
Bsh1236I	CGCG	3 cut(s)	412, 788, 1245
BsiHKAI	GWGCWC	4 cut(s)	514, 1099, 1228, 1595
BsiSI	CCGG	4 cut(s)	173, 417, 515, 1573
BslFI	GGGAC	2 cut(s)	653, 2137
BslI	CCNNNNNNNGG	2 cut(s)	1579, 2233
BsmAI	GTCTC	8 cut(s)	107, 244, 660, 1168, 1399, 1625, 1972, 2079
BsmBI	CGTCTC	1 cut(s)	107
BsmFI	GGGAC	2 cut(s)	653, 2137
BsmI	GAATGC	1 cut(s)	1294
Bso31I	GGTCTC	2 cut(s)	1399, 1972
Bsp119I	TTCGAA	1 cut(s)	1254
Bsp1286I	GDGCHC	5 cut(s)	514, 1033, 1099, 1228, 1595
Bsp13I	TCCGGA	2 cut(s)	172, 514
Bsp143I	GATC	8 cut(s)	303, 931, 993, 1234, 1446, 1576, 1816, 2146
Bsp1720I	GCTNAGC	1 cut(s)	494
BspACI	CCGC	5 cut(s)	365, 457, 794, 1527, 2227
BspCNI	CTCAG	8 cut(s)	61, 507, 1010, 1321, 1342, 1488, 1968, 2176
BspEI	TCCGGA	2 cut(s)	172, 514
BspFNI	CGCG	3 cut(s)	412, 788, 1245
BspLI	GGNNCC	4 cut(s)	768, 1138, 1448, 2063
BspMAI	CTGCAG	3 cut(s)	1024, 1665, 1888
BspPI	GGATC	4 cut(s)	1242, 1441, 1454, 1584
BspT104I	TTCGAA	1 cut(s)	1254
BspTNI	GGTCTC	2 cut(s)	1399, 1972
BsrDI	GCAATG	2 cut(s)	288, 1939
BsrI	ACTGG	4 cut(s)	477, 1426, 1672, 1756
BssECI	CCNNGG	3 cut(s)	383, 1926, 2095
BssMI	GATC	8 cut(s)	303, 931, 993, 1234, 1446, 1576, 1816, 2146
BssSI	CACGAG	2 cut(s)	241, 1943
BssT1I	CCWWGG	2 cut(s)	383, 1926
Bst2BI	CACGAG	2 cut(s)	241, 1943
Bst2UI	CCWGG	1 cut(s)	2097
Bst4CI	ACNGT	5 cut(s)	101, 816, 1074, 1151, 1390
Bst6I	CTCTTC	4 cut(s)	112, 301, 658, 1839
BstAPI	GCANNNNNTGC	4 cut(s)	538, 1109, 1223, 1634
BstBI	TTCGAA	1 cut(s)	1254
BstC8I	GCNNGC	7 cut(s)	208, 343, 414, 500, 1005, 1807, 1884
BstDEI	CTNAG	8 cut(s)	48, 494, 997, 1329, 1350, 1475, 1976, 2163
BstF5I	GGATG	5 cut(s)	407, 976, 1993, 2047, 2242
BstFNI	CGCG	3 cut(s)	412, 788, 1245
BstH2I	RGCGCY	2 cut(s)	899, 1430
BstHHI	GCGC	6 cut(s)	898, 1009, 1114, 1247, 1429, 2014
BstKTI	GATC	8 cut(s)	306, 934, 996, 1237, 1449, 1579, 1819, 2149
BstMAI	GTCTC	8 cut(s)	107, 244, 660, 1168, 1399, 1625, 1972, 2079
BstMBI	GATC	8 cut(s)	303, 931, 993, 1234, 1446, 1576, 1816, 2146
BstNI	CCWGG	1 cut(s)	2097
BstPAI	GACNNNNGTC	1 cut(s)	1391
BstSCI	CCNGG	2 cut(s)	1572, 2095
BstSFI	CTRYAG	4 cut(s)	1020, 1293, 1661, 1884
BstSLI	GKGCMC	1 cut(s)	1228
BstUI	CGCG	3 cut(s)	412, 788, 1245
BstV1I	GCAGC	2 cut(s)	793, 1115
BstX2I	RGATCY	2 cut(s)	1446, 1576
BstYI	RGATCY	2 cut(s)	1446, 1576
BsuI	GTATCC	1 cut(s)	169
BtsCI	GGATG	5 cut(s)	407, 976, 1993, 2047, 2242
BtsI	GCAGTG	1 cut(s)	539
BtsIMutI	CAGTG	3 cut(s)	539, 821, 1419
Cac8I	GCNNGC	7 cut(s)	208, 343, 414, 500, 1005, 1807, 1884
CaiI	CAGNNNCTG	2 cut(s)	1634, 1883
CfoI	GCGC	6 cut(s)	898, 1009, 1114, 1247, 1429, 2014
Csp6I	GTAC	2 cut(s)	910, 1516
CspCI	CAANNNNNGTGG	2 cut(s)	1424, 1459
CviQI	GTAC	2 cut(s)	910, 1516
DdeI	CTNAG	8 cut(s)	48, 494, 997, 1329, 1350, 1475, 1976, 2163
DpnI	GATC	8 cut(s)	305, 933, 995, 1236, 1448, 1578, 1818, 2148
DpnII	GATC	8 cut(s)	303, 931, 993, 1234, 1446, 1576, 1816, 2146
DraIII	CACNNNGTG	1 cut(s)	710
DrdI	GACNNNNNNGTC	2 cut(s)	796, 1072
DseDI	GACNNNNNNGTC	2 cut(s)	796, 1072
Eam1104I	CTCTTC	4 cut(s)	112, 301, 658, 1839
EarI	CTCTTC	4 cut(s)	112, 301, 658, 1839
EciI	GGCGGA	1 cut(s)	380
Ecl136II	GAGCTC	1 cut(s)	512
Eco130I	CCWWGG	2 cut(s)	383, 1926
Eco24I	GRGCYC	2 cut(s)	514, 1033
Eco31I	GGTCTC	2 cut(s)	1399, 1972
Eco47III	AGCGCT	2 cut(s)	897, 1428
Eco53kI	GAGCTC	1 cut(s)	512
Eco57I	CTGAAG	2 cut(s)	1352, 1788
EcoICRI	GAGCTC	1 cut(s)	512
EcoRI	GAATTC	1 cut(s)	589
EcoRII	CCWGG	1 cut(s)	2095
EcoT14I	CCWWGG	2 cut(s)	383, 1926
EcoT22I	ATGCAT	2 cut(s)	257, 1487
EcoT38I	GRGCYC	2 cut(s)	514, 1033
ErhI	CCWWGG	2 cut(s)	383, 1926
Esp3I	CGTCTC	1 cut(s)	107
FaqI	GGGAC	2 cut(s)	653, 2137
FauNDI	CATATG	1 cut(s)	1852
FbaI	TGATCA	1 cut(s)	303
Fnu4HI	GCNGC	3 cut(s)	458, 807, 1104
FokI	GGATG	4 cut(s)	414, 983, 2000, 2054
FriOI	GRGCYC	2 cut(s)	514, 1033
Fsp4HI	GCNGC	3 cut(s)	458, 807, 1104
FspBI	CTAG	6 cut(s)	636, 1077, 1092, 1118, 1133, 1337
FspI	TGCGCA	2 cut(s)	1008, 1113
GlaI	GCGC	6 cut(s)	897, 1008, 1113, 1246, 1428, 2013
GluI	GCNGC	3 cut(s)	458, 807, 1104
GsuI	CTGGAG	2 cut(s)	528, 1443
HaeII	RGCGCY	2 cut(s)	899, 1430
HapII	CCGG	4 cut(s)	173, 417, 515, 1573
HhaI	GCGC	6 cut(s)	898, 1009, 1114, 1247, 1429, 2014
Hin6I	GCGC	6 cut(s)	896, 1007, 1112, 1245, 1427, 2012
HinP1I	GCGC	6 cut(s)	896, 1007, 1112, 1245, 1427, 2012
HincII	GTYRAC	2 cut(s)	1386, 1735
HindII	GTYRAC	2 cut(s)	1386, 1735
HindIII	AAGCTT	2 cut(s)	204, 1407
HinfI	GANTC	8 cut(s)	281, 569, 658, 878, 1016, 1058, 1379, 1671
HpaII	CCGG	4 cut(s)	173, 417, 515, 1573
HphI	GGTGA	5 cut(s)	113, 461, 1198, 1541, 2063
Hpy166II	GTNNAC	5 cut(s)	984, 1226, 1386, 1495, 1735
Hpy188III	TCNNGA	5 cut(s)	173, 507, 515, 1877, 1910
Hpy8I	GTNNAC	5 cut(s)	984, 1226, 1386, 1495, 1735
HpyAV	CCTTC	7 cut(s)	31, 196, 752, 961, 1376, 1409, 1830
HpyCH4III	ACNGT	5 cut(s)	101, 816, 1074, 1151, 1390
HpyCH4IV	ACGT	2 cut(s)	375, 1228
HpyF3I	CTNAG	8 cut(s)	48, 494, 997, 1329, 1350, 1475, 1976, 2163
HpySE526I	ACGT	2 cut(s)	375, 1228
HspAI	GCGC	6 cut(s)	896, 1007, 1112, 1245, 1427, 2012
Kpn2I	TCCGGA	2 cut(s)	172, 514
Ksp22I	TGATCA	1 cut(s)	303
Kzo9I	GATC	8 cut(s)	303, 931, 993, 1234, 1446, 1576, 1816, 2146
LmnI	GCTCC	7 cut(s)	23, 175, 509, 517, 1424, 1434, 1590
Lsp1109I	GCAGC	2 cut(s)	793, 1115
LweI	GCATC	5 cut(s)	392, 622, 1494, 1903, 1978
MaeI	CTAG	6 cut(s)	636, 1077, 1092, 1118, 1133, 1337
MaeII	ACGT	2 cut(s)	375, 1228
MaeIII	GTNAC	4 cut(s)	484, 1204, 1529, 2181
MalI	GATC	8 cut(s)	305, 933, 995, 1236, 1448, 1578, 1818, 2148
MboI	GATC	8 cut(s)	303, 931, 993, 1234, 1446, 1576, 1816, 2146
MboII	GAAGA	8 cut(s)	99, 267, 288, 641, 675, 1781, 1856, 2131
MfeI	CAATTG	1 cut(s)	2006
MflI	RGATCY	2 cut(s)	1446, 1576
MhlI	GDGCHC	5 cut(s)	514, 1033, 1099, 1228, 1595
MlyI	GAGTC	2 cut(s)	275, 578
MmeI	TCCRAC	3 cut(s)	406, 1035, 2081
Mph1103I	ATGCAT	2 cut(s)	257, 1487
MroI	TCCGGA	2 cut(s)	172, 514
MseI	TTAA	5 cut(s)	26, 35, 264, 744, 825
MslI	CAYNNNNRTG	4 cut(s)	546, 1152, 1490, 2019
MspI	CCGG	4 cut(s)	173, 417, 515, 1573
MspR9I	CCNGG	2 cut(s)	1574, 2097
MunI	CAATTG	1 cut(s)	2006
Mva1269I	GAATGC	1 cut(s)	1294
MvaI	CCWGG	1 cut(s)	2097
MvnI	CGCG	3 cut(s)	412, 788, 1245
NciI	CCSGG	1 cut(s)	1574
NdeI	CATATG	1 cut(s)	1852
NdeII	GATC	8 cut(s)	303, 931, 993, 1234, 1446, 1576, 1816, 2146
NlaIV	GGNNCC	4 cut(s)	768, 1138, 1448, 2063
NmuCI	GTSAC	3 cut(s)	1204, 1529, 2181
NsbI	TGCGCA	2 cut(s)	1008, 1113
NsiI	ATGCAT	2 cut(s)	257, 1487
NspV	TTCGAA	1 cut(s)	1254
PctI	GAATGC	1 cut(s)	1294
PfeI	GAWTC	6 cut(s)	658, 878, 1016, 1058, 1379, 1671
PkrI	GCNGC	3 cut(s)	459, 808, 1105
PleI	GAGTC	2 cut(s)	275, 577
PpsI	GAGTC	2 cut(s)	275, 577
PshAI	GACNNNNGTC	1 cut(s)	1391
Psp124BI	GAGCTC	1 cut(s)	514
Psp1406I	AACGTT	1 cut(s)	375
Psp6I	CCWGG	1 cut(s)	2095
PspGI	CCWGG	1 cut(s)	2095
PspN4I	GGNNCC	4 cut(s)	768, 1138, 1448, 2063
PstI	CTGCAG	3 cut(s)	1024, 1665, 1888
PstNI	CAGNNNCTG	2 cut(s)	1634, 1883
PsuI	RGATCY	2 cut(s)	1446, 1576
RsaI	GTAC	2 cut(s)	911, 1517
RsaNI	GTAC	2 cut(s)	910, 1516
RseI	CAYNNNNRTG	4 cut(s)	546, 1152, 1490, 2019
SacI	GAGCTC	1 cut(s)	514
SaqAI	TTAA	5 cut(s)	26, 35, 264, 744, 825
SatI	GCNGC	3 cut(s)	458, 807, 1104
Sau3AI	GATC	8 cut(s)	303, 931, 993, 1234, 1446, 1576, 1816, 2146
SchI	GAGTC	2 cut(s)	275, 578
ScrFI	CCNGG	2 cut(s)	1574, 2097
SduI	GDGCHC	5 cut(s)	514, 1033, 1099, 1228, 1595
SfaNI	GCATC	5 cut(s)	392, 622, 1494, 1903, 1978
SfcI	CTRYAG	4 cut(s)	1020, 1293, 1661, 1884
SfuI	TTCGAA	1 cut(s)	1254
SmiMI	CAYNNNNRTG	4 cut(s)	546, 1152, 1490, 2019
SmlI	CTYRAG	1 cut(s)	111
SmoI	CTYRAG	1 cut(s)	111
SsiI	CCGC	5 cut(s)	365, 457, 794, 1527, 2227
SspI	AATATT	1 cut(s)	928
SspMI	CTAG	6 cut(s)	636, 1077, 1092, 1118, 1133, 1337
SstI	GAGCTC	1 cut(s)	514
StyD4I	CCNGG	2 cut(s)	1572, 2095
StyI	CCWWGG	2 cut(s)	383, 1926
TaaI	ACNGT	5 cut(s)	101, 816, 1074, 1151, 1390
TaiI	ACGT	2 cut(s)	378, 1231
TatI	WGTACW	2 cut(s)	909, 1515
TauI	GCSGC	1 cut(s)	460
TfiI	GAWTC	6 cut(s)	658, 878, 1016, 1058, 1379, 1671
Tru1I	TTAA	5 cut(s)	26, 35, 264, 744, 825
Tru9I	TTAA	5 cut(s)	26, 35, 264, 744, 825
TscAI	CASTG	3 cut(s)	539, 821, 1426
TseFI	GTSAC	3 cut(s)	1204, 1529, 2181
TseI	GCWGC	2 cut(s)	806, 1103
Tsp45I	GTSAC	3 cut(s)	1204, 1529, 2181
TspDTI	ATGAA	6 cut(s)	17, 141, 288, 602, 2045, 2084
TspRI	CASTG	3 cut(s)	539, 821, 1426
VneI	GTGCAC	1 cut(s)	1224
XapI	RAATTY	5 cut(s)	320, 589, 1965, 2158, 2193
XspI	CTAG	6 cut(s)	636, 1077, 1092, 1118, 1133, 1337
Zsp2I	ATGCAT	2 cut(s)	257, 1487

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.