Rh5AG018800

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Reverse (-)
1343423 .. 1345231
1809 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG018800.1

Sequence Viewer

Length: 1629 bp
ATGTTTGGTGATATGCGGCGTGAGGGAGTTCAACCCAGTTCGGTTACTCTGCTCAGCTTGCTCTCTGGAGCTCTGGAACTTGCCCATGTGCAGTGTTTGCATGGTTGTGCTGTGTTGTATGGTTTTGAGTCTGATATGTCTTTGATGAATTCCATGTTGAATGTGTATTGTAAATGTGGGAGAGTTGAAGATGCTAGGGACTTGTTTGAGTATTTGAATCGAAGAGACATTGTTTCGTGGAACTCATTGATTTCAGGCTATGCACAGAGTGGAAATATCAGACAAGTGTTCCAGCTTTTATTTAAGATGAGGGTTGAAGGTGTGGAACCTGATAAGCAGACATACGCGACTGCGGTGTCTGTGGCTGCAACACAGTGTAATCTTAAATTGGGAAAGTCTGTGCATGGACAGATTTTGAGAACAGGATTTGAATTGGATTCTCATGTCGAAACAGCGATTATTGTTATGTACTTGAAGTGCAGGAATATTGATCTTGCGTTTCAGATATTTGAAAGGACAATGCATAAGGATGTGGTTCTGTGGACGGCCATGATCTCAGGGCTTGCGCAAAATGATTCTGCAGACAGGGCTCTAATGGTTTTCTGTCAGATGTTGGAATCGAGAACAGAACCGTCTAGTGCCACCATAGCTAGTGCTCTTGCAGCTTGTGCGCAACTAGGTTCTATTGATTTAGGAACCTCAATTCATGGTTATGTGTTGAGGCAAGGAATGAGACTTGACATTCCTGCCCAAAACTCCCTTGTTACCATGTATGCAAAGTGTGCACGTTTGGATCGAAGTCGCGCTATTTTCGAAAATATGAGCAAAAGAGATTTGGTTTCTTGGAATGCTATAGTTGCTGGATATGCTCAAAATGGTCATATATGCGAGGCTCTGGTACTTTTCTCCGAGATGAGGGCAACTCTTCAGAAGCCTGATTCGTTAACTGTGGTCTCCCTTCTTCAAGCTTGTGCTTCCACTGGGGCTCTCCATCAAGGAAAGTGGATCCACAACTTCATTATTAGAAGTTGCCTCAGACCATGCATCTTGGTAGACACAGCTCTGGTCGACATGTACTCAAAATGTGGCGACATGGATAAAGCTCACAAGTGCTTTGTTGAGATGTCTGACCGGGATCTGGTGTCATGGAGCACTATTATTTCTGGTTATGGTTGTCATGGCAAAGGAGAGACTGCTTTGGAATTTCGAGCTGGAAGGGTGGAAGAGGCATATGATTTCTACAAGAGGGTGTTTCCAGAGCCTGCAGTTGATGTCTTGGGCATACTTCTAGATGCCTGTCGAACAAAGGGCAATGAGGTTCTCGTGGACATTATCGCAGGGGAAATTTTGAGGCTGAGACCTGTGGATGCTGGAAACTATGTGCAATTGGCGCATACCTATGCTTCGATGAACAGATGGGATGGCGTTGGTGAAGCATGGAACCAAATGAAGTCTCTTGGCTTGAAAAAACTCCCTGGTTGGAGTTTTATCGAATTACATGGGACTATCTCTACATTCTTCACAGATCACAATTCAAATCCTCAGATTGATGATATAGTGTCACTATTGAAAATTTTGAGCAAGGAAATGAGGAAATCAAGCCTCCGCAGTTGGGATGGCGTTGAATAA

Protein Analysis

542

Amino Acids

60.31

Weight (kDa)

6.41

Isoelectric Point (pI)

41.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 75 - 117 7.9e-11 PPR repeat family
PPR PF01535 78 - 108 4.2e-07 PPR repeat
PPR_2 PF13041 176 - 224 4e-07 PPR repeat family
PPR_2 PF13041 278 - 325 2.4e-09 PPR repeat family
E_motif PF20431 448 - 498 1.7e-07 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015053)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G04370
fragaria_vesca FvH4_3g01610
malus_domestica MD10G1325500.v1.1
prunus_persica Prupe.4G016600_v2.0.a1
pyrus_communis pycom10g27520
rosa_chinensis RchiOBHm_Chr5g0002401
rosa_laevigata RLG00000031029
rosa_multiflora Rmu_co8285719.1_g000001 Rmu_sc0001717.1_g000003
rosa_roxburghii Rroxscaffold_1G00073450
rosa_rugosa Rorug04G0396000
rosa_samantha Rh5AG018800 Rh5BG021600 Rh5CG020700 Rh5DG019800
rosa_wichuraiana Rw5G001760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 355
Acc16I TGCGCA 2 cut(s) 567, 672
AccI GTMKAC 2 cut(s) 1053, 1068
AccII CGCG 2 cut(s) 347, 804
AciI CCGC 3 cut(s) 16, 353, 1606
AclWI GGATC 4 cut(s) 801, 1000, 1013, 1143
AcoI YGGCCR 1 cut(s) 546
AcsI RAATTY 4 cut(s) 148, 1202, 1344, 1572
AcuI CTGAAG 1 cut(s) 911
AdeI CACNNNGTG 1 cut(s) 269
AfaI GTAC 3 cut(s) 470, 900, 1076
AfiI CCNNNNNNNGG 3 cut(s) 915, 1138, 1612
AflIII ACRYGT 1 cut(s) 1071
AjnI CCWGG 1 cut(s) 1474
AluBI AGCT 9 cut(s) 57, 71, 295, 650, 665, 968, 1061, 1103, 1211
AluI AGCT 9 cut(s) 57, 71, 295, 650, 665, 968, 1061, 1103, 1211
Alw21I GWGCWC 4 cut(s) 73, 658, 787, 1154
Alw26I GTCTC 6 cut(s) 219, 727, 958, 1184, 1351, 1458
Alw44I GTGCAC 1 cut(s) 783
AlwI GGATC 4 cut(s) 801, 1000, 1013, 1143
AlwNI CAGNNNCTG 1 cut(s) 1262
AoxI GGCC 1 cut(s) 546
ApaLI GTGCAC 1 cut(s) 783
ApeKI GCWGC 2 cut(s) 365, 662
ApoI RAATTY 4 cut(s) 148, 1202, 1344, 1572
AspLEI GCGC 4 cut(s) 568, 673, 806, 1393
AsuC2I CCSGG 1 cut(s) 1133
AsuHPI GGTGA 2 cut(s) 20, 1442
AsuII TTCGAA 1 cut(s) 813
BaeGI GKGCMC 1 cut(s) 787
BamHI GGATCC 1 cut(s) 1005
BanII GRGCYC 3 cut(s) 73, 592, 988
BauI CACGAG 1 cut(s) 1322
Bbv12I GWGCWC 4 cut(s) 73, 658, 787, 1154
BbvI GCAGC 2 cut(s) 352, 674
BccI CCATC 4 cut(s) 999, 1410, 1415, 1610
BceAI ACGGC 1 cut(s) 561
BciT130I CCWGG 1 cut(s) 1476
BcnI CCSGG 1 cut(s) 1133
BcoDI GTCTC 6 cut(s) 219, 727, 958, 1184, 1351, 1458
BfaI CTAG 5 cut(s) 195, 636, 651, 677, 1289
BfmI CTRYAG 3 cut(s) 579, 852, 1263
BisI GCNGC 3 cut(s) 17, 366, 663
BlpI GCTNAGC 1 cut(s) 53
BlsI GCNGC 3 cut(s) 18, 367, 664
Bme1390I CCNGG 2 cut(s) 1133, 1476
BmiI GGNNCC 4 cut(s) 327, 697, 1007, 1442
BmrFI CCNGG 2 cut(s) 1133, 1476
BmrI ACTGGG 2 cut(s) 30, 990
BmsI GCATC 4 cut(s) 181, 1053, 1282, 1357
BmuI ACTGGG 2 cut(s) 30, 990
BplI GAGNNNNNCTC 2 cut(s) 907, 939
BpmI CTGGAG 1 cut(s) 87
Bpu1102I GCTNAGC 1 cut(s) 53
Bpu14I TTCGAA 1 cut(s) 813
BpuMI CCSGG 1 cut(s) 1133
BsaI GGTCTC 2 cut(s) 958, 1351
BsaJI CCNNGG 1 cut(s) 1474
Bsc4I CCNNNNNNNGG 3 cut(s) 915, 1138, 1612
Bse1I ACTGG 2 cut(s) 36, 985
Bse3DI GCAATG 1 cut(s) 1318
BseBI CCWGG 1 cut(s) 1476
BseDI CCNNGG 1 cut(s) 1474
BseGI GGATG 4 cut(s) 535, 1372, 1426, 1621
BseLI CCNNNNNNNGG 3 cut(s) 915, 1138, 1612
BseMI GCAATG 1 cut(s) 1318
BseMII CTCAG 5 cut(s) 67, 570, 1048, 1346, 1556
BseNI ACTGG 2 cut(s) 36, 985
BseSI GKGCMC 1 cut(s) 787
BseXI GCAGC 2 cut(s) 352, 674
BsgI GTGCAG 2 cut(s) 110, 499
Bsh1236I CGCG 2 cut(s) 347, 804
BshFI GGCC 1 cut(s) 548
BsiHKAI GWGCWC 4 cut(s) 73, 658, 787, 1154
BsiSI CCGG 1 cut(s) 1132
BslFI GGGAC 2 cut(s) 212, 1516
BslI CCNNNNNNNGG 3 cut(s) 915, 1138, 1612
BsmAI GTCTC 6 cut(s) 219, 727, 958, 1184, 1351, 1458
BsmFI GGGAC 2 cut(s) 212, 1516
BsmI GAATGC 1 cut(s) 853
BsnI GGCC 1 cut(s) 548
Bso31I GGTCTC 2 cut(s) 958, 1351
Bsp119I TTCGAA 1 cut(s) 813
Bsp1286I GDGCHC 6 cut(s) 73, 592, 658, 787, 988, 1154
Bsp143I GATC 6 cut(s) 490, 552, 793, 1005, 1135, 1525
Bsp1720I GCTNAGC 1 cut(s) 53
BspACI CCGC 3 cut(s) 16, 353, 1606
BspANI GGCC 1 cut(s) 548
BspCNI CTCAG 5 cut(s) 66, 569, 1047, 1347, 1555
BspFNI CGCG 2 cut(s) 347, 804
BspLI GGNNCC 4 cut(s) 327, 697, 1007, 1442
BspMAI CTGCAG 2 cut(s) 583, 1267
BspPI GGATC 4 cut(s) 801, 1000, 1013, 1143
BspT104I TTCGAA 1 cut(s) 813
BspTNI GGTCTC 2 cut(s) 958, 1351
BsrDI GCAATG 1 cut(s) 1318
BsrI ACTGG 2 cut(s) 36, 985
BssECI CCNNGG 1 cut(s) 1474
BssMI GATC 6 cut(s) 490, 552, 793, 1005, 1135, 1525
BssSI CACGAG 1 cut(s) 1322
Bst2BI CACGAG 1 cut(s) 1322
Bst2UI CCWGG 1 cut(s) 1476
Bst4CI ACNGT 3 cut(s) 375, 633, 949
Bst6I CTCTTC 3 cut(s) 217, 930, 1218
BstAPI GCANNNNNTGC 3 cut(s) 97, 668, 782
BstBI TTCGAA 1 cut(s) 813
BstC8I GCNNGC 3 cut(s) 59, 564, 1263
BstDEI CTNAG 5 cut(s) 53, 556, 1034, 1355, 1542
BstF5I GGATG 4 cut(s) 535, 1372, 1426, 1621
BstFNI CGCG 2 cut(s) 347, 804
BstHHI GCGC 4 cut(s) 568, 673, 806, 1393
BstKTI GATC 6 cut(s) 493, 555, 796, 1008, 1138, 1528
BstMAI GTCTC 6 cut(s) 219, 727, 958, 1184, 1351, 1458
BstMBI GATC 6 cut(s) 490, 552, 793, 1005, 1135, 1525
BstNI CCWGG 1 cut(s) 1476
BstNSI RCATGY 1 cut(s) 1075
BstSCI CCNGG 2 cut(s) 1131, 1474
BstSFI CTRYAG 3 cut(s) 579, 852, 1263
BstSLI GKGCMC 1 cut(s) 787
BstUI CGCG 2 cut(s) 347, 804
BstV1I GCAGC 2 cut(s) 352, 674
BstX2I RGATCY 2 cut(s) 1005, 1135
BstYI RGATCY 2 cut(s) 1005, 1135
BsuRI GGCC 1 cut(s) 548
BtsCI GGATG 4 cut(s) 535, 1372, 1426, 1621
BtsI GCAGTG 1 cut(s) 98
BtsIMutI CAGTG 3 cut(s) 98, 380, 978
Cac8I GCNNGC 3 cut(s) 59, 564, 1263
CaiI CAGNNNCTG 1 cut(s) 1262
CfoI GCGC 4 cut(s) 568, 673, 806, 1393
Csp6I GTAC 3 cut(s) 469, 899, 1075
CspCI CAANNNNNGTGG 2 cut(s) 983, 1018
CviQI GTAC 3 cut(s) 469, 899, 1075
DdeI CTNAG 5 cut(s) 53, 556, 1034, 1355, 1542
DpnI GATC 6 cut(s) 492, 554, 795, 1007, 1137, 1527
DpnII GATC 6 cut(s) 490, 552, 793, 1005, 1135, 1525
DraIII CACNNNGTG 1 cut(s) 269
DrdI GACNNNNNNGTC 1 cut(s) 355
DseDI GACNNNNNNGTC 1 cut(s) 355
EaeI YGGCCR 1 cut(s) 546
Eam1104I CTCTTC 3 cut(s) 217, 930, 1218
EarI CTCTTC 3 cut(s) 217, 930, 1218
Ecl136II GAGCTC 1 cut(s) 71
Eco24I GRGCYC 3 cut(s) 73, 592, 988
Eco31I GGTCTC 2 cut(s) 958, 1351
Eco53kI GAGCTC 1 cut(s) 71
Eco57I CTGAAG 1 cut(s) 911
EcoICRI GAGCTC 1 cut(s) 71
EcoRI GAATTC 1 cut(s) 148
EcoRII CCWGG 1 cut(s) 1474
EcoT22I ATGCAT 2 cut(s) 525, 1046
EcoT38I GRGCYC 3 cut(s) 73, 592, 988
FaqI GGGAC 2 cut(s) 212, 1516
FauNDI CATATG 1 cut(s) 1231
FblI GTMKAC 2 cut(s) 1053, 1068
Fnu4HI GCNGC 3 cut(s) 17, 366, 663
FokI GGATG 3 cut(s) 542, 1379, 1433
FriOI GRGCYC 3 cut(s) 73, 592, 988
Fsp4HI GCNGC 3 cut(s) 17, 366, 663
FspBI CTAG 5 cut(s) 195, 636, 651, 677, 1289
FspI TGCGCA 2 cut(s) 567, 672
GlaI GCGC 4 cut(s) 567, 672, 805, 1392
GluI GCNGC 3 cut(s) 17, 366, 663
GsuI CTGGAG 1 cut(s) 87
HaeIII GGCC 1 cut(s) 548
HapII CCGG 1 cut(s) 1132
HhaI GCGC 4 cut(s) 568, 673, 806, 1393
Hin6I GCGC 4 cut(s) 566, 671, 804, 1391
HinP1I GCGC 4 cut(s) 566, 671, 804, 1391
HincII GTYRAC 2 cut(s) 945, 1069
HindII GTYRAC 2 cut(s) 945, 1069
HindIII AAGCTT 1 cut(s) 966
HinfI GANTC 6 cut(s) 128, 217, 437, 575, 617, 938
HpaI GTTAAC 1 cut(s) 945
HpaII CCGG 1 cut(s) 1132
HphI GGTGA 2 cut(s) 20, 1442
Hpy166II GTNNAC 6 cut(s) 543, 785, 945, 1054, 1069, 1327
Hpy188I TCNGA 9 cut(s) 133, 281, 504, 609, 910, 930, 1037, 1129, 1545
Hpy188III TCNNGA 5 cut(s) 66, 74, 621, 1256, 1289
Hpy8I GTNNAC 6 cut(s) 543, 785, 945, 1054, 1069, 1327
HpyAV CCTTC 3 cut(s) 311, 968, 1209
HpyCH4III ACNGT 3 cut(s) 375, 633, 949
HpyCH4IV ACGT 1 cut(s) 787
HpyF3I CTNAG 5 cut(s) 53, 556, 1034, 1355, 1542
HpySE526I ACGT 1 cut(s) 787
HspAI GCGC 4 cut(s) 566, 671, 804, 1391
KspAI GTTAAC 1 cut(s) 945
Kzo9I GATC 6 cut(s) 490, 552, 793, 1005, 1135, 1525
LmnI GCTCC 2 cut(s) 68, 1149
Lsp1109I GCAGC 2 cut(s) 352, 674
LweI GCATC 4 cut(s) 181, 1053, 1282, 1357
MaeI CTAG 5 cut(s) 195, 636, 651, 677, 1289
MaeII ACGT 1 cut(s) 787
MaeIII GTNAC 3 cut(s) 43, 763, 1560
MalI GATC 6 cut(s) 492, 554, 795, 1007, 1137, 1527
MboI GATC 6 cut(s) 490, 552, 793, 1005, 1135, 1525
MboII GAAGA 6 cut(s) 200, 234, 917, 953, 1235, 1510
MfeI CAATTG 1 cut(s) 1385
MflI RGATCY 2 cut(s) 1005, 1135
MhlI GDGCHC 6 cut(s) 73, 592, 658, 787, 988, 1154
MlyI GAGTC 1 cut(s) 137
MmeI TCCRAC 2 cut(s) 594, 1460
Mph1103I ATGCAT 2 cut(s) 525, 1046
MseI TTAA 3 cut(s) 303, 384, 944
MslI CAYNNNNRTG 4 cut(s) 105, 528, 711, 1398
MspI CCGG 1 cut(s) 1132
MspR9I CCNGG 2 cut(s) 1133, 1476
MunI CAATTG 1 cut(s) 1385
Mva1269I GAATGC 1 cut(s) 853
MvaI CCWGG 1 cut(s) 1476
MvnI CGCG 2 cut(s) 347, 804
NciI CCSGG 1 cut(s) 1133
NdeI CATATG 1 cut(s) 1231
NdeII GATC 6 cut(s) 490, 552, 793, 1005, 1135, 1525
NlaIV GGNNCC 4 cut(s) 327, 697, 1007, 1442
NmuCI GTSAC 1 cut(s) 1560
NsbI TGCGCA 2 cut(s) 567, 672
NsiI ATGCAT 2 cut(s) 525, 1046
NspI RCATGY 1 cut(s) 1075
NspV TTCGAA 1 cut(s) 813
PciI ACATGT 1 cut(s) 1071
PcsI WCGNNNNNNNCGW 1 cut(s) 793
PctI GAATGC 1 cut(s) 853
PfeI GAWTC 5 cut(s) 217, 437, 575, 617, 938
PkrI GCNGC 3 cut(s) 18, 367, 664
PleI GAGTC 1 cut(s) 136
PpsI GAGTC 1 cut(s) 136
PscI ACATGT 1 cut(s) 1071
Psp124BI GAGCTC 1 cut(s) 73
Psp6I CCWGG 1 cut(s) 1474
PspGI CCWGG 1 cut(s) 1474
PspN4I GGNNCC 4 cut(s) 327, 697, 1007, 1442
PstI CTGCAG 2 cut(s) 583, 1267
PstNI CAGNNNCTG 1 cut(s) 1262
PsuI RGATCY 2 cut(s) 1005, 1135
RsaI GTAC 3 cut(s) 470, 900, 1076
RsaNI GTAC 3 cut(s) 469, 899, 1075
RseI CAYNNNNRTG 4 cut(s) 105, 528, 711, 1398
SacI GAGCTC 1 cut(s) 73
SalI GTCGAC 1 cut(s) 1067
SaqAI TTAA 3 cut(s) 303, 384, 944
SatI GCNGC 3 cut(s) 17, 366, 663
Sau3AI GATC 6 cut(s) 490, 552, 793, 1005, 1135, 1525
SchI GAGTC 1 cut(s) 137
ScrFI CCNGG 2 cut(s) 1133, 1476
SduI GDGCHC 6 cut(s) 73, 592, 658, 787, 988, 1154
SfaNI GCATC 4 cut(s) 181, 1053, 1282, 1357
SfcI CTRYAG 3 cut(s) 579, 852, 1263
SfuI TTCGAA 1 cut(s) 813
SmiMI CAYNNNNRTG 4 cut(s) 105, 528, 711, 1398
SsiI CCGC 3 cut(s) 16, 353, 1606
SspI AATATT 1 cut(s) 487
SspMI CTAG 5 cut(s) 195, 636, 651, 677, 1289
SstI GAGCTC 1 cut(s) 73
StyD4I CCNGG 2 cut(s) 1131, 1474
TaaI ACNGT 3 cut(s) 375, 633, 949
TaiI ACGT 1 cut(s) 790
TatI WGTACW 2 cut(s) 468, 1074
TauI GCSGC 1 cut(s) 19
TfiI GAWTC 5 cut(s) 217, 437, 575, 617, 938
Tru1I TTAA 3 cut(s) 303, 384, 944
Tru9I TTAA 3 cut(s) 303, 384, 944
TscAI CASTG 3 cut(s) 98, 380, 985
TseFI GTSAC 1 cut(s) 1560
TseI GCWGC 2 cut(s) 365, 662
Tsp45I GTSAC 1 cut(s) 1560
TspDTI ATGAA 5 cut(s) 161, 695, 1006, 1424, 1463
TspRI CASTG 3 cut(s) 98, 380, 985
VneI GTGCAC 1 cut(s) 783
XapI RAATTY 4 cut(s) 148, 1202, 1344, 1572
XbaI TCTAGA 1 cut(s) 1288
XceI RCATGY 1 cut(s) 1075
XmiI GTMKAC 2 cut(s) 1053, 1068
XspI CTAG 5 cut(s) 195, 636, 651, 677, 1289
Zsp2I ATGCAT 2 cut(s) 525, 1046
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.