Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8285719.1

Orthogroup ID

OG0015053

Physical Location & Seq

Genomic Coordinates Forward (+)

51 .. 788

Gene Structure 738 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8285719.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

atgtactcaaaatgcggcgacatggataaagctcacaagtgctttgttgagatgtctgaccgggatctggtgtcatggagcactattatttctggttatggttgtcatggcaaaggagagactgctttggaattgtatgcagagcttctgcagactggaatcaaaccaaatcatgtcattttcctctcaattctttcagcttgtagtcataatggtcttgtcgacaagggtttgagcatataccagtcgatgactgaagattttggtattgcaccaagccttgaacatcgagcttgcattgttgatctcctcagtcgagctggaagggtggaagaggcatatgatttctacaagagggtatttccagagcctgcagttgatgtcttgggcatacttctcgatgcctgtcgaaccaagggcaatgaggttctcgtggacattatcgcaggagaaattttgaggctgagacctgtggatgctggaaactatgtgcaattggcgcatacctatgcttcgatgaacagatgggatggcgttggtgaagcatggaaccaaatgaagtcccttggcttgaaaaaactccctggttggagttttatcgaattacatgggactatcactacattcttcacagatcacaattcaaatcctcagattgatgatatagtgtcactattgaaaattttgagcaaggaaatgaggaaatcaagcctccgcagttgggatggcgttgaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1068 PPR PPR_2

Protein Analysis

245

Amino Acids

27.32

Weight (kDa)

5.63

Isoelectric Point (pI)

40.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015053)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04370
fragaria_vesca	FvH4_3g01610
malus_domestica	MD10G1325500.v1.1
prunus_persica	Prupe.4G016600_v2.0.a1
pyrus_communis	pycom10g27520
rosa_chinensis	RchiOBHm_Chr5g0002401
rosa_laevigata	RLG00000031029
rosa_multiflora	Rmu_co8285719.1_g000001 Rmu_sc0001717.1_g000003
rosa_roxburghii	Rroxscaffold_1G00073450
rosa_rugosa	Rorug04G0396000
rosa_samantha	Rh5AG018800 Rh5BG021600 Rh5CG020700 Rh5DG019800
rosa_wichuraiana	Rw5G001760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	222
AciI	CCGC	2 cut(s)	15, 715
AclWI	GGATC	1 cut(s)	72
AcsI	RAATTY	2 cut(s)	453, 681
AcuI	CTGAAG	1 cut(s)	276
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	2 cut(s)	67, 721
AgsI	TTSAA	5 cut(s)	284, 574, 645, 679, 734
AjnI	CCWGG	1 cut(s)	583
AluBI	AGCT	5 cut(s)	32, 145, 200, 293, 320
AluI	AGCT	5 cut(s)	32, 145, 200, 293, 320
Alw21I	GWGCWC	1 cut(s)	83
Alw26I	GTCTC	2 cut(s)	113, 460
AlwI	GGATC	1 cut(s)	72
AlwNI	CAGNNNCTG	1 cut(s)	371
ApoI	RAATTY	2 cut(s)	453, 681
AspLEI	GCGC	1 cut(s)	502
AsuC2I	CCSGG	1 cut(s)	62
AsuHPI	GGTGA	1 cut(s)	551
BauI	CACGAG	1 cut(s)	431
Bbv12I	GWGCWC	1 cut(s)	83
BccI	CCATC	3 cut(s)	519, 524, 719
BcgI	CGANNNNNNTGC	2 cut(s)	379, 413
BciT130I	CCWGG	1 cut(s)	585
BcnI	CCSGG	1 cut(s)	62
BcoDI	GTCTC	2 cut(s)	113, 460
BfmI	CTRYAG	2 cut(s)	149, 372
BisI	GCNGC	1 cut(s)	16
BlsI	GCNGC	1 cut(s)	17
Bme1390I	CCNGG	2 cut(s)	62, 585
BmiI	GGNNCC	1 cut(s)	551
BmrFI	CCNGG	2 cut(s)	62, 585
BmsI	GCATC	2 cut(s)	391, 466
BpuMI	CCSGG	1 cut(s)	62
BsaI	GGTCTC	1 cut(s)	460
BsaJI	CCNNGG	3 cut(s)	414, 565, 583
Bsc4I	CCNNNNNNNGG	2 cut(s)	67, 721
Bse1I	ACTGG	2 cut(s)	160, 244
Bse3DI	GCAATG	1 cut(s)	427
BseBI	CCWGG	1 cut(s)	585
BseDI	CCNNGG	3 cut(s)	414, 565, 583
BseGI	GGATG	3 cut(s)	481, 535, 730
BseLI	CCNNNNNNNGG	2 cut(s)	67, 721
BseMI	GCAATG	1 cut(s)	427
BseMII	CTCAG	3 cut(s)	325, 455, 665
BseNI	ACTGG	2 cut(s)	160, 244
BseRI	GAGGAG	1 cut(s)	299
BsiHKAI	GWGCWC	1 cut(s)	83
BsiSI	CCGG	1 cut(s)	61
BslFI	GGGAC	2 cut(s)	547, 625
BslI	CCNNNNNNNGG	2 cut(s)	67, 721
BsmAI	GTCTC	2 cut(s)	113, 460
BsmFI	GGGAC	2 cut(s)	547, 625
Bso31I	GGTCTC	1 cut(s)	460
Bsp1286I	GDGCHC	1 cut(s)	83
Bsp143I	GATC	3 cut(s)	64, 304, 634
BspACI	CCGC	2 cut(s)	15, 715
BspCNI	CTCAG	3 cut(s)	324, 456, 664
BspLI	GGNNCC	1 cut(s)	551
BspMAI	CTGCAG	2 cut(s)	153, 376
BspPI	GGATC	1 cut(s)	72
BspTNI	GGTCTC	1 cut(s)	460
BsrDI	GCAATG	1 cut(s)	427
BsrI	ACTGG	2 cut(s)	160, 244
BssECI	CCNNGG	3 cut(s)	414, 565, 583
BssMI	GATC	3 cut(s)	64, 304, 634
BssSI	CACGAG	1 cut(s)	431
BssT1I	CCWWGG	2 cut(s)	414, 565
Bst2BI	CACGAG	1 cut(s)	431
Bst2UI	CCWGG	1 cut(s)	585
Bst6I	CTCTTC	1 cut(s)	327
BstC8I	GCNNGC	2 cut(s)	295, 372
BstDEI	CTNAG	3 cut(s)	311, 464, 651
BstF5I	GGATG	3 cut(s)	481, 535, 730
BstHHI	GCGC	1 cut(s)	502
BstKTI	GATC	3 cut(s)	67, 307, 637
BstMAI	GTCTC	2 cut(s)	113, 460
BstMBI	GATC	3 cut(s)	64, 304, 634
BstMWI	GCNNNNNNNGC	1 cut(s)	499
BstNI	CCWGG	1 cut(s)	585
BstSCI	CCNGG	2 cut(s)	60, 583
BstSFI	CTRYAG	2 cut(s)	149, 372
BstX2I	RGATCY	1 cut(s)	64
BstYI	RGATCY	1 cut(s)	64
BtsCI	GGATG	3 cut(s)	481, 535, 730
Cac8I	GCNNGC	2 cut(s)	295, 372
CaiI	CAGNNNCTG	1 cut(s)	371
CfoI	GCGC	1 cut(s)	502
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	6 cut(s)	22, 75, 107, 173, 546, 608
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	3 cut(s)	311, 464, 651
DpnI	GATC	3 cut(s)	66, 306, 636
DpnII	GATC	3 cut(s)	64, 304, 634
Eam1104I	CTCTTC	1 cut(s)	327
EarI	CTCTTC	1 cut(s)	327
Eco130I	CCWWGG	2 cut(s)	414, 565
Eco31I	GGTCTC	1 cut(s)	460
Eco57I	CTGAAG	1 cut(s)	276
EcoRII	CCWGG	1 cut(s)	583
EcoT14I	CCWWGG	2 cut(s)	414, 565
ErhI	CCWWGG	2 cut(s)	414, 565
FaeI	CATG	6 cut(s)	25, 78, 110, 176, 549, 611
FaqI	GGGAC	2 cut(s)	547, 625
FatI	CATG	6 cut(s)	21, 74, 106, 172, 545, 607
FauNDI	CATATG	1 cut(s)	340
FblI	GTMKAC	1 cut(s)	222
Fnu4HI	GCNGC	1 cut(s)	16
FokI	GGATG	2 cut(s)	488, 542
Fsp4HI	GCNGC	1 cut(s)	16
GlaI	GCGC	1 cut(s)	501
GluI	GCNGC	1 cut(s)	16
HapII	CCGG	1 cut(s)	61
HhaI	GCGC	1 cut(s)	502
Hin1II	CATG	6 cut(s)	25, 78, 110, 176, 549, 611
Hin6I	GCGC	1 cut(s)	500
HinP1I	GCGC	1 cut(s)	500
HincII	GTYRAC	1 cut(s)	223
HindII	GTYRAC	1 cut(s)	223
HinfI	GANTC	1 cut(s)	159
HpaII	CCGG	1 cut(s)	61
HphI	GGTGA	1 cut(s)	551
Hpy166II	GTNNAC	2 cut(s)	223, 436
Hpy188I	TCNGA	2 cut(s)	58, 654
Hpy188III	TCNNGA	2 cut(s)	365, 398
Hpy8I	GTNNAC	2 cut(s)	223, 436
HpyAV	CCTTC	1 cut(s)	318
HpyCH4V	TGCA	6 cut(s)	140, 151, 272, 297, 374, 493
HpyF10VI	GCNNNNNNNGC	1 cut(s)	499
HpyF3I	CTNAG	3 cut(s)	311, 464, 651
Hsp92II	CATG	6 cut(s)	25, 78, 110, 176, 549, 611
HspAI	GCGC	1 cut(s)	500
Kzo9I	GATC	3 cut(s)	64, 304, 634
LmnI	GCTCC	1 cut(s)	78
LweI	GCATC	2 cut(s)	391, 466
MaeIII	GTNAC	1 cut(s)	669
MalI	GATC	3 cut(s)	66, 306, 636
MboI	GATC	3 cut(s)	64, 304, 634
MboII	GAAGA	3 cut(s)	269, 344, 619
MfeI	CAATTG	1 cut(s)	494
MflI	RGATCY	1 cut(s)	64
MhlI	GDGCHC	1 cut(s)	83
MluCI	AATT	7 cut(s)	131, 189, 453, 494, 602, 640, 681
MmeI	TCCRAC	1 cut(s)	569
MnlI	CCTC	9 cut(s)	194, 320, 328, 348, 418, 453, 660, 693, 722
MslI	CAYNNNNRTG	1 cut(s)	507
MspI	CCGG	1 cut(s)	61
MspR9I	CCNGG	2 cut(s)	62, 585
MunI	CAATTG	1 cut(s)	494
MvaI	CCWGG	1 cut(s)	585
MwoI	GCNNNNNNNGC	1 cut(s)	499
NciI	CCSGG	1 cut(s)	62
NdeI	CATATG	1 cut(s)	340
NdeII	GATC	3 cut(s)	64, 304, 634
NlaIII	CATG	6 cut(s)	25, 78, 110, 176, 549, 611
NlaIV	GGNNCC	1 cut(s)	551
NmuCI	GTSAC	1 cut(s)	669
PfeI	GAWTC	1 cut(s)	159
PkrI	GCNGC	1 cut(s)	17
Psp6I	CCWGG	1 cut(s)	583
PspGI	CCWGG	1 cut(s)	583
PspN4I	GGNNCC	1 cut(s)	551
PstI	CTGCAG	2 cut(s)	153, 376
PstNI	CAGNNNCTG	1 cut(s)	371
PsuI	RGATCY	1 cut(s)	64
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
RseI	CAYNNNNRTG	1 cut(s)	507
SalI	GTCGAC	1 cut(s)	221
SatI	GCNGC	1 cut(s)	16
Sau3AI	GATC	3 cut(s)	64, 304, 634
ScrFI	CCNGG	2 cut(s)	62, 585
SduI	GDGCHC	1 cut(s)	83
SetI	ASST	8 cut(s)	34, 147, 202, 295, 322, 429, 472, 509
SfaNI	GCATC	2 cut(s)	391, 466
SfcI	CTRYAG	2 cut(s)	149, 372
SmiMI	CAYNNNNRTG	1 cut(s)	507
Sse9I	AATT	7 cut(s)	131, 189, 453, 494, 602, 640, 681
SsiI	CCGC	2 cut(s)	15, 715
StyD4I	CCNGG	2 cut(s)	60, 583
StyI	CCWWGG	2 cut(s)	414, 565
TaqI	TCGA	8 cut(s)	222, 248, 289, 316, 399, 409, 515, 600
TasI	AATT	7 cut(s)	131, 189, 453, 494, 602, 640, 681
TatI	WGTACW	1 cut(s)	3
TauI	GCSGC	1 cut(s)	18
TfiI	GAWTC	1 cut(s)	159
TseFI	GTSAC	1 cut(s)	669
Tsp45I	GTSAC	1 cut(s)	669
TspDTI	ATGAA	2 cut(s)	533, 572
XapI	RAATTY	2 cut(s)	453, 681
XmiI	GTMKAC	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.