Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001717.1

Orthogroup ID

OG0015053

Physical Location & Seq

Genomic Coordinates Reverse (-)

8347 .. 9606

Gene Structure 1260 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001717.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

atgatctcagggcttgcgcaaaatgattctgcagacagggctctaatggttttctgtcagatgttggaatcgagaacagaaccgtctagtgccaccatagctagtgctcttgcagcttgtgcgcaactaggttctattgatttaggaacctcaattcatggttatgtgttgaggcaaggaatgagacttgacattcctgcccaaaactcccttgttaccatgtatgcaaagtgtgcacgtttggatcgaagtcgcgctattttcgaaaatatgagcaaaagagatttggtttcttggaatgctatagttgctggatatgctcaaaatggtcatatatgcgaggctctggtacttttctccgagatgagggcaactcttcagaagcctgattcgttaactgtggtctcccttcttcaagcctgtgcttccactggggctctccatcaaggaaagtggatccacaacttcattattagaagttgcctcagaccatgcatcttggtagacacagctctggtcgacatgtactcaaaatgcggcgacatggataaagctcacaagtgctttgttgagatgtctgaccgggatctggtgtcatggagcactattatttctggttatggttgtcatggcaaaggagagactgctttggaattgtatgcagagcttctgcagactggaatcaaaccaaatcatgtcattttcctctcaattctttcagcttgtagtcataatggtcttgtcgacaagggtttgagcatataccagtcgatgactgaagattttggtattgcaccaagccttgaacatcgagcttgcattgttgatctcctcagtcgagctggaagggtggaagaggcatatgatttctacaagagggtgtttccagagcctgcagttgatgtcttgggcatacttctcgatgcctgtcgaaccaagggcaatgaggttctcgtggacattatcgcaggagaaattttgaggctgagacctgtggatgctggaaactatgtgcaattggcgcatacctatgcttcgatgaacagatgggatggcgttggtgaagcatggaaccaaatgaagtcccttggcttgaaaaaactccctggttggagttttatcgaattacatgggactatcactacattcttcacagatcacaattcaaatcctcagattgatgatatagtgtcactattgaaaattttgagcaaggaaatgaggaaatcaagcctccgcagttgggatggcgttgaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1068 PPR PPR_2

Protein Analysis

419

Amino Acids

46.19

Weight (kDa)

6.07

Isoelectric Point (pI)

42.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015053)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04370
fragaria_vesca	FvH4_3g01610
malus_domestica	MD10G1325500.v1.1
prunus_persica	Prupe.4G016600_v2.0.a1
pyrus_communis	pycom10g27520
rosa_chinensis	RchiOBHm_Chr5g0002401
rosa_laevigata	RLG00000031029
rosa_multiflora	Rmu_co8285719.1_g000001 Rmu_sc0001717.1_g000003
rosa_roxburghii	Rroxscaffold_1G00073450
rosa_rugosa	Rorug04G0396000
rosa_samantha	Rh5AG018800 Rh5BG021600 Rh5CG020700 Rh5DG019800
rosa_wichuraiana	Rw5G001760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	18, 123
AccI	GTMKAC	3 cut(s)	504, 519, 744
AccII	CGCG	1 cut(s)	255
AciI	CCGC	2 cut(s)	537, 1237
AclWI	GGATC	4 cut(s)	252, 451, 464, 594
AcsI	RAATTY	2 cut(s)	975, 1203
AcuI	CTGAAG	2 cut(s)	362, 798
AfaI	GTAC	2 cut(s)	351, 527
AfiI	CCNNNNNNNGG	3 cut(s)	366, 589, 1243
AflIII	ACRYGT	1 cut(s)	522
AgsI	TTSAA	6 cut(s)	416, 806, 1096, 1167, 1201, 1256
AjnI	CCWGG	1 cut(s)	1105
AluBI	AGCT	8 cut(s)	101, 116, 512, 554, 667, 722, 815, 842
AluI	AGCT	8 cut(s)	101, 116, 512, 554, 667, 722, 815, 842
Alw21I	GWGCWC	3 cut(s)	109, 238, 605
Alw26I	GTCTC	4 cut(s)	178, 409, 635, 982
Alw44I	GTGCAC	1 cut(s)	234
AlwI	GGATC	4 cut(s)	252, 451, 464, 594
AlwNI	CAGNNNCTG	1 cut(s)	893
ApaLI	GTGCAC	1 cut(s)	234
ApeKI	GCWGC	1 cut(s)	113
ApoI	RAATTY	2 cut(s)	975, 1203
AspLEI	GCGC	4 cut(s)	19, 124, 257, 1024
AsuC2I	CCSGG	1 cut(s)	584
AsuHPI	GGTGA	1 cut(s)	1073
AsuII	TTCGAA	1 cut(s)	264
BaeGI	GKGCMC	1 cut(s)	238
BamHI	GGATCC	1 cut(s)	456
BanII	GRGCYC	2 cut(s)	43, 439
BauI	CACGAG	1 cut(s)	953
Bbv12I	GWGCWC	3 cut(s)	109, 238, 605
BbvI	GCAGC	1 cut(s)	125
BccI	CCATC	4 cut(s)	450, 1041, 1046, 1241
BcgI	CGANNNNNNTGC	2 cut(s)	901, 935
BciT130I	CCWGG	1 cut(s)	1107
BcnI	CCSGG	1 cut(s)	584
BcoDI	GTCTC	4 cut(s)	178, 409, 635, 982
BfaI	CTAG	3 cut(s)	87, 102, 128
BfmI	CTRYAG	4 cut(s)	30, 303, 671, 894
BisI	GCNGC	2 cut(s)	114, 538
BlsI	GCNGC	2 cut(s)	115, 539
Bme1390I	CCNGG	2 cut(s)	584, 1107
BmiI	GGNNCC	3 cut(s)	148, 458, 1073
BmrFI	CCNGG	2 cut(s)	584, 1107
BmrI	ACTGGG	1 cut(s)	441
BmsI	GCATC	3 cut(s)	504, 913, 988
BmuI	ACTGGG	1 cut(s)	441
BplI	GAGNNNNNCTC	2 cut(s)	358, 390
Bpu14I	TTCGAA	1 cut(s)	264
BpuMI	CCSGG	1 cut(s)	584
BsaI	GGTCTC	2 cut(s)	409, 982
BsaJI	CCNNGG	3 cut(s)	936, 1087, 1105
Bsc4I	CCNNNNNNNGG	3 cut(s)	366, 589, 1243
Bse1I	ACTGG	3 cut(s)	436, 682, 766
Bse3DI	GCAATG	1 cut(s)	949
BseBI	CCWGG	1 cut(s)	1107
BseDI	CCNNGG	3 cut(s)	936, 1087, 1105
BseGI	GGATG	3 cut(s)	1003, 1057, 1252
BseLI	CCNNNNNNNGG	3 cut(s)	366, 589, 1243
BseMI	GCAATG	1 cut(s)	949
BseMII	CTCAG	5 cut(s)	21, 499, 847, 977, 1187
BseNI	ACTGG	3 cut(s)	436, 682, 766
BseRI	GAGGAG	1 cut(s)	821
BseSI	GKGCMC	1 cut(s)	238
BseXI	GCAGC	1 cut(s)	125
Bsh1236I	CGCG	1 cut(s)	255
BsiHKAI	GWGCWC	3 cut(s)	109, 238, 605
BsiSI	CCGG	1 cut(s)	583
BslFI	GGGAC	2 cut(s)	1069, 1147
BslI	CCNNNNNNNGG	3 cut(s)	366, 589, 1243
BsmAI	GTCTC	4 cut(s)	178, 409, 635, 982
BsmFI	GGGAC	2 cut(s)	1069, 1147
BsmI	GAATGC	1 cut(s)	304
Bso31I	GGTCTC	2 cut(s)	409, 982
Bsp119I	TTCGAA	1 cut(s)	264
Bsp1286I	GDGCHC	5 cut(s)	43, 109, 238, 439, 605
Bsp143I	GATC	6 cut(s)	3, 244, 456, 586, 826, 1156
BspACI	CCGC	2 cut(s)	537, 1237
BspCNI	CTCAG	5 cut(s)	20, 498, 846, 978, 1186
BspFNI	CGCG	1 cut(s)	255
BspLI	GGNNCC	3 cut(s)	148, 458, 1073
BspMAI	CTGCAG	3 cut(s)	34, 675, 898
BspPI	GGATC	4 cut(s)	252, 451, 464, 594
BspT104I	TTCGAA	1 cut(s)	264
BspTNI	GGTCTC	2 cut(s)	409, 982
BsrDI	GCAATG	1 cut(s)	949
BsrI	ACTGG	3 cut(s)	436, 682, 766
BssECI	CCNNGG	3 cut(s)	936, 1087, 1105
BssMI	GATC	6 cut(s)	3, 244, 456, 586, 826, 1156
BssSI	CACGAG	1 cut(s)	953
BssT1I	CCWWGG	2 cut(s)	936, 1087
Bst2BI	CACGAG	1 cut(s)	953
Bst2UI	CCWGG	1 cut(s)	1107
Bst4CI	ACNGT	2 cut(s)	84, 400
Bst6I	CTCTTC	2 cut(s)	381, 849
BstAPI	GCANNNNNTGC	2 cut(s)	119, 233
BstBI	TTCGAA	1 cut(s)	264
BstC8I	GCNNGC	3 cut(s)	15, 817, 894
BstDEI	CTNAG	5 cut(s)	7, 485, 833, 986, 1173
BstF5I	GGATG	3 cut(s)	1003, 1057, 1252
BstFNI	CGCG	1 cut(s)	255
BstHHI	GCGC	4 cut(s)	19, 124, 257, 1024
BstKTI	GATC	6 cut(s)	6, 247, 459, 589, 829, 1159
BstMAI	GTCTC	4 cut(s)	178, 409, 635, 982
BstMBI	GATC	6 cut(s)	3, 244, 456, 586, 826, 1156
BstMWI	GCNNNNNNNGC	8 cut(s)	38, 98, 113, 119, 233, 308, 317, 1021
BstNI	CCWGG	1 cut(s)	1107
BstNSI	RCATGY	1 cut(s)	526
BstSCI	CCNGG	2 cut(s)	582, 1105
BstSFI	CTRYAG	4 cut(s)	30, 303, 671, 894
BstSLI	GKGCMC	1 cut(s)	238
BstUI	CGCG	1 cut(s)	255
BstV1I	GCAGC	1 cut(s)	125
BstX2I	RGATCY	2 cut(s)	456, 586
BstYI	RGATCY	2 cut(s)	456, 586
BtsCI	GGATG	3 cut(s)	1003, 1057, 1252
BtsIMutI	CAGTG	1 cut(s)	429
Cac8I	GCNNGC	3 cut(s)	15, 817, 894
CaiI	CAGNNNCTG	1 cut(s)	893
CfoI	GCGC	4 cut(s)	19, 124, 257, 1024
Csp6I	GTAC	2 cut(s)	350, 526
CspCI	CAANNNNNGTGG	2 cut(s)	434, 469
CviQI	GTAC	2 cut(s)	350, 526
DdeI	CTNAG	5 cut(s)	7, 485, 833, 986, 1173
DpnI	GATC	6 cut(s)	5, 246, 458, 588, 828, 1158
DpnII	GATC	6 cut(s)	3, 244, 456, 586, 826, 1156
Eam1104I	CTCTTC	2 cut(s)	381, 849
EarI	CTCTTC	2 cut(s)	381, 849
Eco130I	CCWWGG	2 cut(s)	936, 1087
Eco24I	GRGCYC	2 cut(s)	43, 439
Eco31I	GGTCTC	2 cut(s)	409, 982
Eco57I	CTGAAG	2 cut(s)	362, 798
EcoRII	CCWGG	1 cut(s)	1105
EcoT14I	CCWWGG	2 cut(s)	936, 1087
EcoT22I	ATGCAT	1 cut(s)	497
EcoT38I	GRGCYC	2 cut(s)	43, 439
ErhI	CCWWGG	2 cut(s)	936, 1087
FaqI	GGGAC	2 cut(s)	1069, 1147
FauNDI	CATATG	1 cut(s)	862
FblI	GTMKAC	3 cut(s)	504, 519, 744
Fnu4HI	GCNGC	2 cut(s)	114, 538
FokI	GGATG	2 cut(s)	1010, 1064
FriOI	GRGCYC	2 cut(s)	43, 439
Fsp4HI	GCNGC	2 cut(s)	114, 538
FspBI	CTAG	3 cut(s)	87, 102, 128
FspI	TGCGCA	2 cut(s)	18, 123
GlaI	GCGC	4 cut(s)	18, 123, 256, 1023
GluI	GCNGC	2 cut(s)	114, 538
HapII	CCGG	1 cut(s)	583
HhaI	GCGC	4 cut(s)	19, 124, 257, 1024
Hin6I	GCGC	4 cut(s)	17, 122, 255, 1022
HinP1I	GCGC	4 cut(s)	17, 122, 255, 1022
HincII	GTYRAC	3 cut(s)	396, 520, 745
HindII	GTYRAC	3 cut(s)	396, 520, 745
HinfI	GANTC	4 cut(s)	26, 68, 389, 681
HpaI	GTTAAC	1 cut(s)	396
HpaII	CCGG	1 cut(s)	583
HphI	GGTGA	1 cut(s)	1073
Hpy166II	GTNNAC	6 cut(s)	236, 396, 505, 520, 745, 958
Hpy188I	TCNGA	6 cut(s)	60, 361, 381, 488, 580, 1176
Hpy188III	TCNNGA	3 cut(s)	72, 887, 920
Hpy8I	GTNNAC	6 cut(s)	236, 396, 505, 520, 745, 958
HpyAV	CCTTC	2 cut(s)	419, 840
HpyCH4III	ACNGT	2 cut(s)	84, 400
HpyCH4IV	ACGT	1 cut(s)	238
HpyF10VI	GCNNNNNNNGC	8 cut(s)	38, 98, 113, 119, 233, 308, 317, 1021
HpyF3I	CTNAG	5 cut(s)	7, 485, 833, 986, 1173
HpySE526I	ACGT	1 cut(s)	238
HspAI	GCGC	4 cut(s)	17, 122, 255, 1022
KspAI	GTTAAC	1 cut(s)	396
Kzo9I	GATC	6 cut(s)	3, 244, 456, 586, 826, 1156
LmnI	GCTCC	1 cut(s)	600
Lsp1109I	GCAGC	1 cut(s)	125
LweI	GCATC	3 cut(s)	504, 913, 988
MaeI	CTAG	3 cut(s)	87, 102, 128
MaeII	ACGT	1 cut(s)	238
MaeIII	GTNAC	2 cut(s)	214, 1191
MalI	GATC	6 cut(s)	5, 246, 458, 588, 828, 1158
MboI	GATC	6 cut(s)	3, 244, 456, 586, 826, 1156
MboII	GAAGA	5 cut(s)	368, 404, 791, 866, 1141
MfeI	CAATTG	1 cut(s)	1016
MflI	RGATCY	2 cut(s)	456, 586
MhlI	GDGCHC	5 cut(s)	43, 109, 238, 439, 605
MluCI	AATT	8 cut(s)	153, 653, 711, 975, 1016, 1124, 1162, 1203
MmeI	TCCRAC	2 cut(s)	45, 1091
Mph1103I	ATGCAT	1 cut(s)	497
MseI	TTAA	1 cut(s)	395
MslI	CAYNNNNRTG	2 cut(s)	162, 1029
MspI	CCGG	1 cut(s)	583
MspR9I	CCNGG	2 cut(s)	584, 1107
MunI	CAATTG	1 cut(s)	1016
Mva1269I	GAATGC	1 cut(s)	304
MvaI	CCWGG	1 cut(s)	1107
MvnI	CGCG	1 cut(s)	255
MwoI	GCNNNNNNNGC	8 cut(s)	38, 98, 113, 119, 233, 308, 317, 1021
NciI	CCSGG	1 cut(s)	584
NdeI	CATATG	1 cut(s)	862
NdeII	GATC	6 cut(s)	3, 244, 456, 586, 826, 1156
NlaIV	GGNNCC	3 cut(s)	148, 458, 1073
NmuCI	GTSAC	1 cut(s)	1191
NsbI	TGCGCA	2 cut(s)	18, 123
NsiI	ATGCAT	1 cut(s)	497
NspI	RCATGY	1 cut(s)	526
NspV	TTCGAA	1 cut(s)	264
PciI	ACATGT	1 cut(s)	522
PcsI	WCGNNNNNNNCGW	1 cut(s)	244
PctI	GAATGC	1 cut(s)	304
PfeI	GAWTC	4 cut(s)	26, 68, 389, 681
PkrI	GCNGC	2 cut(s)	115, 539
PscI	ACATGT	1 cut(s)	522
Psp6I	CCWGG	1 cut(s)	1105
PspGI	CCWGG	1 cut(s)	1105
PspN4I	GGNNCC	3 cut(s)	148, 458, 1073
PstI	CTGCAG	3 cut(s)	34, 675, 898
PstNI	CAGNNNCTG	1 cut(s)	893
PsuI	RGATCY	2 cut(s)	456, 586
RsaI	GTAC	2 cut(s)	351, 527
RsaNI	GTAC	2 cut(s)	350, 526
RseI	CAYNNNNRTG	2 cut(s)	162, 1029
SalI	GTCGAC	2 cut(s)	518, 743
SaqAI	TTAA	1 cut(s)	395
SatI	GCNGC	2 cut(s)	114, 538
Sau3AI	GATC	6 cut(s)	3, 244, 456, 586, 826, 1156
ScrFI	CCNGG	2 cut(s)	584, 1107
SduI	GDGCHC	5 cut(s)	43, 109, 238, 439, 605
SfaNI	GCATC	3 cut(s)	504, 913, 988
SfcI	CTRYAG	4 cut(s)	30, 303, 671, 894
SfuI	TTCGAA	1 cut(s)	264
SmiMI	CAYNNNNRTG	2 cut(s)	162, 1029
Sse9I	AATT	8 cut(s)	153, 653, 711, 975, 1016, 1124, 1162, 1203
SsiI	CCGC	2 cut(s)	537, 1237
SspMI	CTAG	3 cut(s)	87, 102, 128
StyD4I	CCNGG	2 cut(s)	582, 1105
StyI	CCWWGG	2 cut(s)	936, 1087
TaaI	ACNGT	2 cut(s)	84, 400
TaiI	ACGT	1 cut(s)	241
TasI	AATT	8 cut(s)	153, 653, 711, 975, 1016, 1124, 1162, 1203
TatI	WGTACW	1 cut(s)	525
TauI	GCSGC	1 cut(s)	540
TfiI	GAWTC	4 cut(s)	26, 68, 389, 681
Tru1I	TTAA	1 cut(s)	395
Tru9I	TTAA	1 cut(s)	395
TscAI	CASTG	1 cut(s)	436
TseFI	GTSAC	1 cut(s)	1191
TseI	GCWGC	1 cut(s)	113
Tsp45I	GTSAC	1 cut(s)	1191
TspDTI	ATGAA	4 cut(s)	146, 457, 1055, 1094
TspRI	CASTG	1 cut(s)	436
VneI	GTGCAC	1 cut(s)	234
XapI	RAATTY	2 cut(s)	975, 1203
XceI	RCATGY	1 cut(s)	526
XmiI	GTMKAC	3 cut(s)	504, 519, 744
XspI	CTAG	3 cut(s)	87, 102, 128
Zsp2I	ATGCAT	1 cut(s)	497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.