Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0016785

Physical Location & Seq

Genomic Coordinates Reverse (-)

15106507 .. 15111654

Gene Structure 5148 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032432

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3777 bp

ATGTCAGGGTCATCTGGAAGAAGAAAGAGGAAGATAAGATGGAGCAAGCTGTATTCCTATGGATGCTTCAGACCACCCCACACTCTTGATTCTGATCCTGGCCAACAGCTACTGGGTCAACCGGGGTTTTCCCGGGTGGTTTTCTGCAATGAACCTCAGCTGCACAAGGCTAAGCCTTACAAGTACCCCAAGAACTATGTATCCACAACCAAGTACAACATCGTCACTTTTCTTCCCAAAGCTCTTTTCGAGCAGTTTCGCAGAGTTGCCAATCTTTATTTTCTTCTAGCAGCAGTTTTGTCTCTCAATTCTTTCGCTCCCTTTAATCCAATAAGTTTGATTGCTCCTTTGGTGTTTGTTGTGGGAGTTAGCATGATTAAAGAGGCTGTCGAGGATTGGCACCGATTCTTGCAGGATTTGAATGTGAATTCAAGAACTGTAAGGGCTCATGTTGGAGGTGGCTTATTTGTTGAAAAGACATGGCAAGGACTTTGTGTTGGAGATGTTGTTAAAGTTAACAAGAATGAATATTTTCCAAGTGATCTTCTCTTGCTATCTTCTAGCTTTGAGGATGGCATATGTTATGTCGAGACCATGAACCTCGATGGAGAAACTAATCTGAAAGTTAAGAGAAGCTCAGAAGCCACACTTGACTTGGCAAATGATCAAGCATTTAGTGAATTCAAGGCCACAATTCGCTGTGAGGATCCAAATCCTCATCTTTACACCTTTGTTGGGAATTTAGAGTTGAACAGTGTAACACATCCCTTGTGCCCTGCCACACTGCTTCTAAGAGATTCGAAACTTAGAAATACTGATTACATTTATGGGGTTGTGATCTTTAGTGGAACTGACACAAAAGCAGTGAGGAACTCAACAAGATCACCATCCAAGCGTAGTCGGATTGAAAGAAAGATGGATCTTGTCATTTACCTTCTCTTTTCAATGCTTCTTCTCATTTCACTCATTACTTCAACTGGTTTCGCGGTGATTCTGAAATCACAAATGGCCAAGTGGTGGTACCTTTCTCTGCAAGATGATGATCTACTCTTTAAACCATTAAAGCCTGGAGTATCTGGTTTCCTACAATTTGTAAGGGCCCTTATTTTGTATGGCTACTTGATCCCCATTTCTCTCTATGTCTCTATAGAGGTTGTCAAAGTTTTGCAAGCCATGCTCATTAACAAGGATATAGAGTTGTATGATGAAGTTACATGCAAGTCAGTTCAAACCAGAACATCCAACTTGAATGAAGAACTTGGTCAAGTAGAGATGATTCTGACGGATAAAACGGGGACTTTGACGTGTAATCAGATGGAATTTAGGAAATGCTCTATTGCTGGAGCTTCATATGGGGGTAACATTAATAATATCGATCGTGCAGCATCTAAAAGGATGAATGTTGAAGTTGAGTCGTATCGTTTTAGTATGGATGAATTTGAAACACAATGCCAAAGCTTTGAAATGTTTGACTTTTCAGTGGCTGATGTTAGCACTGAAAAAGCTGCTCTTGCTGGACAGAAGCACATGCAGAACTCGAGTGCAGACTGTTCCAGAATCTCTAGTGCGGAGGGAGAACCTGCCATCAAAGGTTTCAACTTTAGGGATGTGAACAGAAAGTGGGTTTATAGGTCCAACTTATTTGATGTAACAATGTTCTTTAGAGTCATGGCTCTATGTCACACAGGCATACCTGTTGATGGTGATCAGGCTCATAAGCTAAAGTATGAGGCAGAGTCACCAGAAGAAGTATCTTTTCTAATTGCTGCACAAGAGTTTGGATTTCAATTTTTTCAAAGAAGTCAGTCCGTTATGTATCTCAAGGAGTTTGATCCGTCCTCTGGAAAGGTGGTTGAGAGGAAGTACAAACTTTTAAACCTTCTAGAATTCTGTAGCGCTCGAAAGAGGATGTCAGTTATTGTAAGCAATGAAGATGGTGAAATCTTTCTTCTCTGCAAAGGGGCAGATAACATTATCTTTGATAGACTTGCAGACAATGGTAGGTCTTACCAACAGGCTACAACTGTACACCTTTCAGATTATGCAGAAGATGGATTTCGAACTCTAGCATTTGCTTATCGAAAACTTGATGCTGTCGAGTATGAAAAATGGAACTCAATATTTGCCGAGGCTAAGACCACAATAGGTCCTGAAAGAGAAGAAGTACTAATAGAAGCATCTGAAATGATTGAAAAGGATTTAATTCTTTTAGGGGTTGCTGCTATTGAAGACAAGTTACAAAAAGGGGTTCCAGAATGCATAGATAAACTTGCACAAGCAGGAATGAAAATATGGCTGCTCACTGGTGACAAGAAAGAAACTGCAATAAATATTGGATTTTCTTGCAGCTTACTTCGGGAGGATATGAAACAGTTTCATCTAATTTTGGGCAAAGAAAGTGCAGCTAGTAACCGACTGAAGGAGATGAAGGAAGACATTTTAAACCAACTTGAAGGCTTTCAGAAAGTGAAGTCTGAAGAAAGCAACAAAGATGCACCCTTGTCTTTGATAGTAGATGGAAAAGCTCTTGAAATTGCTCTGAGAAGTGATGTGAAGGACCAGTTCTTACCGTTGGCCGTTGATTGTGCTTCTGTTATATGCTGCAGGGTGTCTCCAAAACAAAAGGCTCTGATTACTCGATTGGTAAAGGAACATACGGGCAAGACAACCTTGGCTATTGGAGATGGGGCAAATGATGTTGGCATGATTCAAGAAGCTGATATTGGAGTAGGAATCAGTGGCATGGAAGGAATGCAGGCAGTCATGGCCAGTGACATCTCATTGCCTCAATTCCGATTTTTGGGGAGATTACTTATTGTTCATGGGCACTGGTGTTACAAGAGGATTTCGAAAATGATTCTCTACTTTGTGTACAAAAACATTGCATTTGGCCTCACACTGTTCTACTATGAAGTATACACAAGTTTCTCAGGGGAGGTCTTATATGATGACTGGTATATGGCACTATTCAATGTAATTTTGACATCTTTGCCTGTTATATCATTGGGAGTCCTTGAGCAAGATGTTTCATCCGAAGTGTGCCTCAAGTTTCCGGCTCTCTACCAACAGGGCCAAAAGAACATATACTTCACTTGGAGCCGCATCATCGGTTGGATACTCAACGGCATTGTAGCATCTCTAGTCATCTTCCTTGCAAACATATGCACGCTTTCTACCTTCAACAAAGATGGTAGTTTTGCAGAGAAAGCCTTCGCCAAAGACGGTAATGTTGCAGACATCACACACCTCGGTGCCATGACATACACATGCATAATCTGGACAGTCAATTGCCAGATATCCCTCATCATCACCCACTTCACTTGGATCCAACATCTCTTCATATGGGGCAGCATCATCATCTGGTACATCTTCCTGTTCATCTACGGTGCGCTACCTCCTGACATTTCGAAAAGAGGCTTTCGTGTTCTTGCAGAAGCTCTTGGCCCTGCGCCCATTTACTGGCTTGTCACATTGCTCGTTGTGGTTGTTGCTCTTCTTCCTTATTTCATCCACATTGCGATCCAACGGTTGTTTTATCCTTTGGATGACCATGTAATTCAAGAAATGAAGTATTGCAGGAAAGATATTGGGAAAAATAATCTAATTTGGGAGAGGGAACAGAACAACTCAGTGATGATGACCCAGATAGGATTTTCGGCTAGAGTTGATGCAAGGATTCGGATTATGAAGGAAAACTTGAACCAGAAGGGACACTTGATATATAGATCAGTAACAAGCAGTCCAATATTTAGGTCACTGACAAGCAGTCCAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004012 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006900 GO:0006996 GO:0008150 GO:0009987 GO:0010876 GO:0012505 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031984 GO:0033036 GO:0034204 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045332 GO:0048193 GO:0048194 GO:0051179 GO:0051234 GO:0061024 GO:0065007 GO:0065008 GO:0071702 GO:0071840 GO:0071944 GO:0097035 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase E1-E2_ATPase Hydrolase PhoLip_ATPase_C PhoLip_ATPase_N

Protein Analysis

1259

Amino Acids

142.36

Weight (kDa)

7.45

Isoelectric Point (pI)

37.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PhoLip_ATPase_N	PF16209	47 - 113	1.7e-22	Phospholipid-translocating ATPase N-terminal
Cation_ATPase	PF13246	552 - 748	5.4e-17	P-type ATPase, cytoplasmic domain N
PhoLip_ATPase_C	PF16212	921 - 1180	1.9e-85	Phospholipid-translocating P-type ATPase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016785)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g11830
malus_domestica	MD10G1238400.v1.1
prunus_persica	Prupe.4G105900_v2.0.a1
pyrus_communis	pycom10g19940
rosa_chinensis	RchiOBHm_Chr5g0019261
rosa_laevigata	RLG00000032432
rosa_multiflora	Rmu_co8517133.1_g000001
rosa_roxburghii	Rroxscaffold_1G00058740
rosa_rugosa	Rorug05G0049000
rosa_samantha	Rh5AG140100 Rh5BG139100 Rh5CG150500 Rh5DG139700
rosa_wichuraiana	Rw5G012460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1588
Acc65I	GGTACC	1 cut(s)	1020
AccB1I	GGYRCC	3 cut(s)	399, 1020, 3251
AccB7I	CCANNNNNTGG	2 cut(s)	1017, 3459
AccI	GTMKAC	1 cut(s)	2916
AccII	CGCG	1 cut(s)	986
AciI	CCGC	3 cut(s)	986, 1568, 3100
AclWI	GGATC	9 cut(s)	89, 701, 714, 927, 1117, 1826, 3319, 3332, 3514
AcoI	YGGCCR	4 cut(s)	100, 1008, 2574, 2766
AcsI	RAATTY	6 cut(s)	427, 680, 739, 1319, 1436, 1886
AcuI	CTGAAG	3 cut(s)	52, 2438, 2496
AfaI	GTAC	8 cut(s)	185, 215, 1022, 1865, 2028, 2166, 2873, 3365
AfeI	AGCGCT	1 cut(s)	1897
AfiI	CCNNNNNNNGG	7 cut(s)	735, 1017, 1700, 1841, 2419, 2800, 3459
AflIII	ACRYGT	1 cut(s)	1304
AhdI	GACNNNNNGTC	1 cut(s)	3765
AjiI	CACGTC	1 cut(s)	1305
AjnI	CCWGG	2 cut(s)	97, 1066
AjuI	GAANNNNNNNTTGG	4 cut(s)	230, 262, 2706, 2738
AleI	CACNNNNGTG	1 cut(s)	3249
AloI	GAACNNNNNNTCC	2 cut(s)	185, 217
Alw26I	GTCTC	4 cut(s)	306, 584, 1147, 2616
AlwI	GGATC	9 cut(s)	89, 701, 714, 927, 1117, 1826, 3319, 3332, 3514
AlwNI	CAGNNNCTG	2 cut(s)	112, 1484
Ama87I	CYCGRG	2 cut(s)	132, 1537
Aor51HI	AGCGCT	1 cut(s)	1897
AoxI	GGCC	9 cut(s)	100, 687, 1008, 1098, 2574, 2766, 2890, 3070, 3442
ApaI	GGGCCC	1 cut(s)	1102
ApoI	RAATTY	6 cut(s)	427, 680, 739, 1319, 1436, 1886
AseI	ATTAAT	1 cut(s)	1365
Asp700I	GAANNNNTTC	4 cut(s)	531, 1944, 2457, 3209
Asp718I	GGTACC	1 cut(s)	1020
AspLEI	GCGC	3 cut(s)	1898, 3391, 3451
AspS9I	GGNCC	7 cut(s)	1098, 1099, 1632, 2147, 2557, 3070, 3443
AsuC2I	CCSGG	3 cut(s)	123, 133, 134
AsuHPI	GGTGA	7 cut(s)	876, 1000, 1715, 1731, 1949, 2318, 3301
AsuII	TTCGAA	4 cut(s)	800, 2059, 2849, 3407
AvaI	CYCGRG	2 cut(s)	132, 1537
AvaII	GGWCC	3 cut(s)	1632, 2147, 2557
BaeGI	GKGCMC	3 cut(s)	776, 1102, 2829
BalI	TGGCCA	3 cut(s)	102, 1010, 2768
BamHI	GGATCC	2 cut(s)	706, 3324
BanI	GGYRCC	3 cut(s)	399, 1020, 3251
BanII	GRGCYC	2 cut(s)	448, 1102
BarI	GAAGNNNNNNTAC	2 cut(s)	2220, 2252
BbsI	GAAGAC	2 cut(s)	2235, 2439
BbvCI	CCTCAGC	1 cut(s)	156
BceAI	ACGGC	2 cut(s)	2561, 3139
BciT130I	CCWGG	2 cut(s)	99, 1068
BciVI	GTATCC	2 cut(s)	211, 3108
BclI	TGATCA	2 cut(s)	664, 1705
BcnI	CCSGG	3 cut(s)	123, 133, 134
BcoDI	GTCTC	4 cut(s)	306, 584, 1147, 2616
BfaI	CTAG	8 cut(s)	287, 561, 1563, 1883, 2066, 2406, 3140, 3660
BfmI	CTRYAG	3 cut(s)	1146, 1891, 2602
BfoI	RGCGCY	1 cut(s)	1899
BfuAI	ACCTGC	1 cut(s)	1588
BfuI	GTATCC	2 cut(s)	211, 3108
BlpI	GCTNAGC	1 cut(s)	171
BmcAI	AGTACT	1 cut(s)	2166
Bme1390I	CCNGG	5 cut(s)	99, 123, 133, 134, 1068
Bme18I	GGWCC	3 cut(s)	1632, 2147, 2557
BmeRI	GACNNNNNGTC	1 cut(s)	3765
BmeT110I	CYCGRG	2 cut(s)	132, 1537
BmgBI	CACGTC	1 cut(s)	1305
BmgT120I	GGNCC	7 cut(s)	1098, 1099, 1632, 2147, 2557, 3070, 3443
BmiI	GGNNCC	8 cut(s)	401, 708, 1022, 1100, 2250, 3098, 3253, 3326
BmrFI	CCNGG	5 cut(s)	99, 123, 133, 134, 1068
BmrI	ACTGGG	1 cut(s)	122
BmsI	GCATC	9 cut(s)	53, 1394, 2080, 2186, 2482, 3111, 3143, 3360, 3658
BmuI	ACTGGG	1 cut(s)	122
BpiI	GAAGAC	2 cut(s)	2235, 2439
BpmI	CTGGAG	2 cut(s)	1089, 1362
Bpu10I	CCTNAGC	1 cut(s)	156
Bpu1102I	GCTNAGC	1 cut(s)	171
Bpu14I	TTCGAA	4 cut(s)	800, 2059, 2849, 3407
BpuEI	CTTGAG	3 cut(s)	1805, 3029, 3035
BpuMI	CCSGG	3 cut(s)	123, 133, 134
Bsa29I	ATCGAT	1 cut(s)	1374
BsaBI	GATNNNNATC	5 cut(s)	93, 711, 886, 1041, 1704
BsaI	GGTCTC	1 cut(s)	584
BsaJI	CCNNGG	5 cut(s)	122, 132, 2127, 2670, 3247
BsaXI	ACNNNNNCTCC	2 cut(s)	492, 522
Bsc4I	CCNNNNNNNGG	7 cut(s)	735, 1017, 1700, 1841, 2419, 2800, 3459
Bse1I	ACTGG	8 cut(s)	117, 982, 2308, 2560, 2769, 2834, 2957, 3464
Bse3DI	GCAATG	6 cut(s)	154, 1933, 2780, 2880, 3470, 3513
Bse8I	GATNNNNATC	5 cut(s)	93, 711, 886, 1041, 1704
BseBI	CCWGG	2 cut(s)	99, 1068
BseCI	ATCGAT	1 cut(s)	1374
BseDI	CCNNGG	5 cut(s)	122, 132, 2127, 2670, 3247
BseJI	GATNNNNATC	5 cut(s)	93, 711, 886, 1041, 1704
BseLI	CCNNNNNNNGG	7 cut(s)	735, 1017, 1700, 1841, 2419, 2800, 3459
BseMI	GCAATG	6 cut(s)	154, 1933, 2780, 2880, 3470, 3513
BseMII	CTCAG	5 cut(s)	170, 651, 2531, 2943, 3642
BseNI	ACTGG	8 cut(s)	117, 982, 2308, 2560, 2769, 2834, 2957, 3464
BseSI	GKGCMC	3 cut(s)	776, 1102, 2829
BsgI	GTGCAG	5 cut(s)	146, 1401, 1563, 1752, 2421
Bsh1236I	CGCG	1 cut(s)	986
Bsh1285I	CGRYCG	1 cut(s)	1378
BshFI	GGCC	9 cut(s)	102, 689, 1010, 1100, 2576, 2768, 2892, 3072, 3444
BshNI	GGYRCC	3 cut(s)	399, 1020, 3251
BshVI	ATCGAT	1 cut(s)	1374
BsiEI	CGRYCG	1 cut(s)	1378
BsiHKCI	CYCGRG	2 cut(s)	132, 1537
BsiSI	CCGG	3 cut(s)	122, 133, 3053
BslFI	GGGAC	2 cut(s)	1309, 3723
BslI	CCNNNNNNNGG	7 cut(s)	735, 1017, 1700, 1841, 2419, 2800, 3459
BsmAI	GTCTC	4 cut(s)	306, 584, 1147, 2616
BsmFI	GGGAC	2 cut(s)	1309, 3723
BsmI	GAATGC	2 cut(s)	2261, 2757
BsnI	GGCC	9 cut(s)	102, 689, 1010, 1100, 2576, 2768, 2892, 3072, 3444
Bso31I	GGTCTC	1 cut(s)	584
BsoBI	CYCGRG	2 cut(s)	132, 1537
Bsp119I	TTCGAA	4 cut(s)	800, 2059, 2849, 3407
Bsp120I	GGGCCC	1 cut(s)	1098
Bsp1286I	GDGCHC	4 cut(s)	448, 776, 1102, 2829
Bsp1407I	TGTACA	2 cut(s)	2026, 2871
Bsp1720I	GCTNAGC	1 cut(s)	171
BspACI	CCGC	3 cut(s)	986, 1568, 3100
BspANI	GGCC	9 cut(s)	102, 689, 1010, 1100, 2576, 2768, 2892, 3072, 3444
BspCNI	CTCAG	5 cut(s)	169, 650, 2532, 2942, 3641
BspDI	ATCGAT	1 cut(s)	1374
BspFNI	CGCG	1 cut(s)	986
BspLI	GGNNCC	8 cut(s)	401, 708, 1022, 1100, 2250, 3098, 3253, 3326
BspMAI	CTGCAG	1 cut(s)	2606
BspMI	ACCTGC	1 cut(s)	1588
BspPI	GGATC	9 cut(s)	89, 701, 714, 927, 1117, 1826, 3319, 3332, 3514
BspQI	GCTCTTC	1 cut(s)	3498
BspT104I	TTCGAA	4 cut(s)	800, 2059, 2849, 3407
BspT107I	GGYRCC	3 cut(s)	399, 1020, 3251
BspTNI	GGTCTC	1 cut(s)	584
BsrDI	GCAATG	6 cut(s)	154, 1933, 2780, 2880, 3470, 3513
BsrGI	TGTACA	2 cut(s)	2026, 2871
BsrI	ACTGG	8 cut(s)	117, 982, 2308, 2560, 2769, 2834, 2957, 3464
BssECI	CCNNGG	5 cut(s)	122, 132, 2127, 2670, 3247
BssNAI	GTATAC	1 cut(s)	2917
BssT1I	CCWWGG	1 cut(s)	2670
Bst1107I	GTATAC	1 cut(s)	2917
Bst2UI	CCWGG	2 cut(s)	99, 1068
Bst6I	CTCTTC	2 cut(s)	3341, 3498
BstAPI	GCANNNNNTGC	1 cut(s)	1174
BstAUI	TGTACA	2 cut(s)	2026, 2871
BstBI	TTCGAA	4 cut(s)	800, 2059, 2849, 3407
BstC8I	GCNNGC	4 cut(s)	47, 1170, 2757, 3167
BstDEI	CTNAG	9 cut(s)	156, 171, 637, 791, 806, 2133, 2540, 2929, 3628
BstFNI	CGCG	1 cut(s)	986
BstH2I	RGCGCY	1 cut(s)	1899
BstHHI	GCGC	3 cut(s)	1898, 3391, 3451
BstMAI	GTCTC	4 cut(s)	306, 584, 1147, 2616
BstMCI	CGRYCG	1 cut(s)	1378
BstMWI	GCNNNNNNNGC	4 cut(s)	1174, 1511, 2765, 3206
BstNI	CCWGG	2 cut(s)	99, 1068
BstNSI	RCATGY	3 cut(s)	1218, 1531, 3270
BstSCI	CCNGG	5 cut(s)	97, 121, 131, 132, 1066
BstSFI	CTRYAG	3 cut(s)	1146, 1891, 2602
BstSLI	GKGCMC	3 cut(s)	776, 1102, 2829
BstUI	CGCG	1 cut(s)	986
BstV2I	GAAGAC	2 cut(s)	2235, 2439
BstX2I	RGATCY	3 cut(s)	706, 919, 3324
BstYI	RGATCY	3 cut(s)	706, 919, 3324
BstZ17I	GTATAC	1 cut(s)	2917
Bsu15I	ATCGAT	1 cut(s)	1374
BsuI	GTATCC	2 cut(s)	211, 3108
BsuRI	GGCC	9 cut(s)	102, 689, 1010, 1100, 2576, 2768, 2892, 3072, 3444
BsuTUI	ATCGAT	1 cut(s)	1374
BtrI	CACGTC	1 cut(s)	1305
BtsI	GCAGTG	2 cut(s)	782, 870
BveI	ACCTGC	1 cut(s)	1588
Cac8I	GCNNGC	4 cut(s)	47, 1170, 2757, 3167
CaiI	CAGNNNCTG	2 cut(s)	112, 1484
CfoI	GCGC	3 cut(s)	1898, 3391, 3451
Cfr13I	GGNCC	7 cut(s)	1098, 1099, 1632, 2147, 2557, 3070, 3443
Cfr9I	CCCGGG	1 cut(s)	132
ClaI	ATCGAT	1 cut(s)	1374
Csp6I	GTAC	8 cut(s)	184, 214, 1021, 1864, 2027, 2165, 2872, 3364
CspCI	CAANNNNNGTGG	2 cut(s)	3302, 3337
CviQI	GTAC	8 cut(s)	184, 214, 1021, 1864, 2027, 2165, 2872, 3364
DdeI	CTNAG	9 cut(s)	156, 171, 637, 791, 806, 2133, 2540, 2929, 3628
DraI	TTTAAA	3 cut(s)	1054, 1875, 2442
DriI	GACNNNNNGTC	1 cut(s)	3765
EaeI	YGGCCR	4 cut(s)	100, 1008, 2574, 2766
Eam1104I	CTCTTC	2 cut(s)	3341, 3498
Eam1105I	GACNNNNNGTC	1 cut(s)	3765
EarI	CTCTTC	2 cut(s)	3341, 3498
Eco130I	CCWWGG	1 cut(s)	2670
Eco24I	GRGCYC	2 cut(s)	448, 1102
Eco31I	GGTCTC	1 cut(s)	584
Eco32I	GATATC	1 cut(s)	3297
Eco47I	GGWCC	3 cut(s)	1632, 2147, 2557
Eco47III	AGCGCT	1 cut(s)	1897
Eco57I	CTGAAG	3 cut(s)	52, 2438, 2496
Eco88I	CYCGRG	2 cut(s)	132, 1537
EcoO109I	RGGNCCY	3 cut(s)	1098, 1099, 2147
EcoRI	GAATTC	3 cut(s)	427, 680, 1886
EcoRII	CCWGG	2 cut(s)	97, 1066
EcoRV	GATATC	1 cut(s)	3297
EcoT14I	CCWWGG	1 cut(s)	2670
EcoT22I	ATGCAT	2 cut(s)	2261, 3272
EcoT38I	GRGCYC	2 cut(s)	448, 1102
ErhI	CCWWGG	1 cut(s)	2670
FaqI	GGGAC	2 cut(s)	1309, 3723
FauNDI	CATATG	4 cut(s)	578, 1351, 3161, 3341
FbaI	TGATCA	2 cut(s)	664, 1705
FblI	GTMKAC	1 cut(s)	2916
FriOI	GRGCYC	2 cut(s)	448, 1102
FspBI	CTAG	8 cut(s)	287, 561, 1563, 1883, 2066, 2406, 3140, 3660
GlaI	GCGC	3 cut(s)	1897, 3390, 3450
GsuI	CTGGAG	2 cut(s)	1089, 1362
HaeII	RGCGCY	1 cut(s)	1899
HaeIII	GGCC	9 cut(s)	102, 689, 1010, 1100, 2576, 2768, 2892, 3072, 3444
HapII	CCGG	3 cut(s)	122, 133, 3053
HhaI	GCGC	3 cut(s)	1898, 3391, 3451
Hin6I	GCGC	3 cut(s)	1896, 3389, 3449
HinP1I	GCGC	3 cut(s)	1896, 3389, 3449
HincII	GTYRAC	2 cut(s)	119, 517
HindII	GTYRAC	2 cut(s)	119, 517
HindIII	AAGCTT	1 cut(s)	1456
HpaI	GTTAAC	1 cut(s)	517
HpaII	CCGG	3 cut(s)	122, 133, 3053
HphI	GGTGA	7 cut(s)	876, 1000, 1715, 1731, 1949, 2318, 3301
Hpy166II	GTNNAC	6 cut(s)	119, 517, 1612, 2029, 2872, 2917
Hpy8I	GTNNAC	6 cut(s)	119, 517, 1612, 2029, 2872, 2917
HpyCH4IV	ACGT	1 cut(s)	1304
HpyF10VI	GCNNNNNNNGC	4 cut(s)	1174, 1511, 2765, 3206
HpyF3I	CTNAG	9 cut(s)	156, 171, 637, 791, 806, 2133, 2540, 2929, 3628
HpySE526I	ACGT	1 cut(s)	1304
HspAI	GCGC	3 cut(s)	1896, 3389, 3449
KpnI	GGTACC	1 cut(s)	1024
Ksp22I	TGATCA	2 cut(s)	664, 1705
KspAI	GTTAAC	1 cut(s)	517
LguI	GCTCTTC	1 cut(s)	3498
LmnI	GCTCC	5 cut(s)	42, 322, 349, 1343, 3096
LweI	GCATC	9 cut(s)	53, 1394, 2080, 2186, 2482, 3111, 3143, 3360, 3658
MaeI	CTAG	8 cut(s)	287, 561, 1563, 1883, 2066, 2406, 3140, 3660
MaeII	ACGT	1 cut(s)	1304
MfeI	CAATTG	1 cut(s)	3286
MflI	RGATCY	3 cut(s)	706, 919, 3324
MhlI	GDGCHC	4 cut(s)	448, 776, 1102, 2829
MlsI	TGGCCA	3 cut(s)	102, 1010, 2768
MluNI	TGGCCA	3 cut(s)	102, 1010, 2768
MlyI	GAGTC	4 cut(s)	1421, 1674, 1745, 3018
MmeI	TCCRAC	8 cut(s)	433, 478, 881, 1266, 1659, 3092, 3352, 3547
Mox20I	TGGCCA	3 cut(s)	102, 1010, 2768
Mph1103I	ATGCAT	2 cut(s)	2261, 3272
MroXI	GAANNNNTTC	4 cut(s)	531, 1944, 2457, 3209
MscI	TGGCCA	3 cut(s)	102, 1010, 2768
MslI	CAYNNNNRTG	2 cut(s)	3249, 3265
Msp20I	TGGCCA	3 cut(s)	102, 1010, 2768
MspA1I	CMGCKG	1 cut(s)	160
MspI	CCGG	3 cut(s)	122, 133, 3053
MspR9I	CCNGG	5 cut(s)	99, 123, 133, 134, 1068
MunI	CAATTG	1 cut(s)	3286
Mva1269I	GAATGC	2 cut(s)	2261, 2757
MvaI	CCWGG	2 cut(s)	99, 1068
MvnI	CGCG	1 cut(s)	986
MwoI	GCNNNNNNNGC	4 cut(s)	1174, 1511, 2765, 3206
NciI	CCSGG	3 cut(s)	123, 133, 134
NdeI	CATATG	4 cut(s)	578, 1351, 3161, 3341
NlaIV	GGNNCC	8 cut(s)	401, 708, 1022, 1100, 2250, 3098, 3253, 3326
NmeAIII	GCCGAG	1 cut(s)	2152
NmuCI	GTSAC	7 cut(s)	223, 1679, 1737, 2306, 2771, 3466, 3753
NsiI	ATGCAT	2 cut(s)	2261, 3272
NspI	RCATGY	3 cut(s)	1218, 1531, 3270
NspV	TTCGAA	4 cut(s)	800, 2059, 2849, 3407
OliI	CACNNNNGTG	1 cut(s)	3249
PaeR7I	CTCGAG	1 cut(s)	1537
PciSI	GCTCTTC	1 cut(s)	3498
PctI	GAATGC	2 cut(s)	2261, 2757
PdmI	GAANNNNTTC	4 cut(s)	531, 1944, 2457, 3209
PflMI	CCANNNNNTGG	2 cut(s)	1017, 3459
Ple19I	CGATCG	1 cut(s)	1378
PleI	GAGTC	4 cut(s)	1420, 1673, 1744, 3017
PpsI	GAGTC	4 cut(s)	1420, 1673, 1744, 3017
PpuMI	RGGWCCY	1 cut(s)	2147
PshBI	ATTAAT	1 cut(s)	1365
Psp5II	RGGWCCY	1 cut(s)	2147
Psp6I	CCWGG	2 cut(s)	97, 1066
PspGI	CCWGG	2 cut(s)	97, 1066
PspN4I	GGNNCC	8 cut(s)	401, 708, 1022, 1100, 2250, 3098, 3253, 3326
PspOMI	GGGCCC	1 cut(s)	1098
PspPI	GGNCC	7 cut(s)	1098, 1099, 1632, 2147, 2557, 3070, 3443
PspPPI	RGGWCCY	1 cut(s)	2147
PspXI	VCTCGAGB	1 cut(s)	1537
PstI	CTGCAG	1 cut(s)	2606
PstNI	CAGNNNCTG	2 cut(s)	112, 1484
PsuI	RGATCY	3 cut(s)	706, 919, 3324
PvuI	CGATCG	1 cut(s)	1378
PvuII	CAGCTG	1 cut(s)	160
RsaI	GTAC	8 cut(s)	185, 215, 1022, 1865, 2028, 2166, 2873, 3365
RsaNI	GTAC	8 cut(s)	184, 214, 1021, 1864, 2027, 2165, 2872, 3364
RseI	CAYNNNNRTG	2 cut(s)	3249, 3265
SapI	GCTCTTC	1 cut(s)	3498
Sau96I	GGNCC	7 cut(s)	1098, 1099, 1632, 2147, 2557, 3070, 3443
ScaI	AGTACT	1 cut(s)	2166
SchI	GAGTC	4 cut(s)	1421, 1674, 1745, 3018
ScrFI	CCNGG	5 cut(s)	99, 123, 133, 134, 1068
SduI	GDGCHC	4 cut(s)	448, 776, 1102, 2829
SfaNI	GCATC	9 cut(s)	53, 1394, 2080, 2186, 2482, 3111, 3143, 3360, 3658
SfcI	CTRYAG	3 cut(s)	1146, 1891, 2602
Sfr274I	CTCGAG	1 cut(s)	1537
SfuI	TTCGAA	4 cut(s)	800, 2059, 2849, 3407
SinI	GGWCC	3 cut(s)	1632, 2147, 2557
SlaI	CTCGAG	1 cut(s)	1537
SmaI	CCCGGG	1 cut(s)	134
SmiMI	CAYNNNNRTG	2 cut(s)	3249, 3265
SmlI	CTYRAG	4 cut(s)	1537, 1820, 3014, 3044
SmoI	CTYRAG	4 cut(s)	1537, 1820, 3014, 3044
SsiI	CCGC	3 cut(s)	986, 1568, 3100
SspI	AATATT	4 cut(s)	530, 2121, 2332, 3747
SspMI	CTAG	8 cut(s)	287, 561, 1563, 1883, 2066, 2406, 3140, 3660
StyD4I	CCNGG	5 cut(s)	97, 121, 131, 132, 1066
StyI	CCWWGG	1 cut(s)	2670
TaiI	ACGT	1 cut(s)	1307
TatI	WGTACW	5 cut(s)	213, 1863, 2026, 2164, 2871
TauI	GCSGC	1 cut(s)	3102
TseFI	GTSAC	7 cut(s)	223, 1679, 1737, 2306, 2771, 3466, 3753
Tsp45I	GTSAC	7 cut(s)	223, 1679, 1737, 2306, 2771, 3466, 3753
TspGWI	ACGGA	3 cut(s)	1298, 1798, 1824
TspMI	CCCGGG	1 cut(s)	132
Van91I	CCANNNNNTGG	2 cut(s)	1017, 3459
VpaK11BI	GGWCC	3 cut(s)	1632, 2147, 2557
VspI	ATTAAT	1 cut(s)	1365
XapI	RAATTY	6 cut(s)	427, 680, 739, 1319, 1436, 1886
XbaI	TCTAGA	1 cut(s)	1882
XceI	RCATGY	3 cut(s)	1218, 1531, 3270
XcmI	CCANNNNNNNNNTGG	1 cut(s)	652
XhoI	CTCGAG	1 cut(s)	1537
XmaI	CCCGGG	1 cut(s)	132
XmiI	GTMKAC	1 cut(s)	2916
XmnI	GAANNNNTTC	4 cut(s)	531, 1944, 2457, 3209
XspI	CTAG	8 cut(s)	287, 561, 1563, 1883, 2066, 2406, 3140, 3660
ZrmI	AGTACT	1 cut(s)	2166
Zsp2I	ATGCAT	2 cut(s)	2261, 3272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.