Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0016785

Physical Location & Seq

Genomic Coordinates Forward (+)

4300971 .. 4301770

Gene Structure 800 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0049000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGCTGGCTGGATTGTTATGGCCGGTTACTACTTCGATTCGATCACCTGATCAGAGGAAAAGAAAGATGAGTCTCACGAACGAAGGAGCCTCAAAGAAGAAGGCTGATTCAGATTCTGAAGAGGATAACAACCTAAAAGAGAAAGGCGTTTCAAACAAAAAGAAAGAGGGTTTTTGTAGTTTTCTGTTCAGGCTAATGCCAATGTGGTCATTCTTTCAGCTTCAACGGCGAATGAAGATTGCAGAATTGAAAAGGCTGCCTGATGTTGTTGAGGTGTGGGATGCAACTGCTTTTCTTTCTGAAATTGTTTCGGAATACTGTACTGGTGCCAAGTCATTGGTCCTTGGTGCCAGAAAAGGAAATTTCTACAGGAGAGCGATGTGGCTACTGTGGAGGCTGTACTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004012 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006900 GO:0006996 GO:0008150 GO:0009987 GO:0010876 GO:0012505 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031984 GO:0033036 GO:0034204 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045332 GO:0048193 GO:0048194 GO:0051179 GO:0051234 GO:0061024 GO:0065007 GO:0065008 GO:0071702 GO:0071840 GO:0071944 GO:0097035 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase E1-E2_ATPase Hydrolase PhoLip_ATPase_C PhoLip_ATPase_N

Protein Analysis

135

Amino Acids

15.72

Weight (kDa)

9.86

Isoelectric Point (pI)

54.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0016785)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g11830
malus_domestica	MD10G1238400.v1.1
prunus_persica	Prupe.4G105900_v2.0.a1
pyrus_communis	pycom10g19940
rosa_chinensis	RchiOBHm_Chr5g0019261
rosa_laevigata	RLG00000032432
rosa_multiflora	Rmu_co8517133.1_g000001
rosa_roxburghii	Rroxscaffold_1G00058740
rosa_rugosa	Rorug05G0049000
rosa_samantha	Rh5AG140100 Rh5BG139100 Rh5CG150500 Rh5DG139700
rosa_wichuraiana	Rw5G012460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	326, 347
AcoI	YGGCCR	1 cut(s)	20
AcsI	RAATTY	1 cut(s)	361
AcuI	CTGAAG	1 cut(s)	138
AfaI	GTAC	2 cut(s)	322, 401
AgsI	TTSAA	3 cut(s)	153, 224, 250
AluBI	AGCT	1 cut(s)	220
AluI	AGCT	1 cut(s)	220
Alw26I	GTCTC	1 cut(s)	77
AlwNI	CAGNNNCTG	1 cut(s)	116
AoxI	GGCC	1 cut(s)	20
ApeKI	GCWGC	1 cut(s)	256
ApoI	RAATTY	1 cut(s)	361
AspS9I	GGNCC	1 cut(s)	340
AsuHPI	GGTGA	1 cut(s)	36
AvaII	GGWCC	1 cut(s)	340
BanI	GGYRCC	2 cut(s)	326, 347
BbvI	GCAGC	1 cut(s)	243
BceAI	ACGGC	1 cut(s)	242
BclI	TGATCA	1 cut(s)	49
BcoDI	GTCTC	1 cut(s)	77
BfmI	CTRYAG	1 cut(s)	367
BisI	GCNGC	1 cut(s)	257
BlsI	GCNGC	1 cut(s)	258
Bme18I	GGWCC	1 cut(s)	340
BmgT120I	GGNCC	1 cut(s)	340
BmiI	GGNNCC	3 cut(s)	88, 328, 349
BmsI	GCATC	1 cut(s)	271
BsaJI	CCNNGG	1 cut(s)	343
Bse118I	RCCGGY	1 cut(s)	22
Bse1I	ACTGG	1 cut(s)	328
BseDI	CCNNGG	1 cut(s)	343
BseGI	GGATG	1 cut(s)	286
BseNI	ACTGG	1 cut(s)	328
BseXI	GCAGC	1 cut(s)	243
BshFI	GGCC	1 cut(s)	22
BshNI	GGYRCC	2 cut(s)	326, 347
BsiSI	CCGG	1 cut(s)	23
BsmAI	GTCTC	1 cut(s)	77
BsnI	GGCC	1 cut(s)	22
Bsp143I	GATC	2 cut(s)	41, 49
BspANI	GGCC	1 cut(s)	22
BspLI	GGNNCC	3 cut(s)	88, 328, 349
BspT107I	GGYRCC	2 cut(s)	326, 347
BsrFI	RCCGGY	1 cut(s)	22
BsrI	ACTGG	1 cut(s)	328
BssAI	RCCGGY	1 cut(s)	22
BssECI	CCNNGG	1 cut(s)	343
BssMI	GATC	2 cut(s)	41, 49
BssT1I	CCWWGG	1 cut(s)	343
Bst4CI	ACNGT	2 cut(s)	320, 390
Bst6I	CTCTTC	1 cut(s)	114
BstC8I	GCNNGC	1 cut(s)	6
BstF5I	GGATG	1 cut(s)	286
BstKTI	GATC	2 cut(s)	44, 52
BstMAI	GTCTC	1 cut(s)	77
BstMBI	GATC	2 cut(s)	41, 49
BstMWI	GCNNNNNNNGC	1 cut(s)	226
BstSFI	CTRYAG	1 cut(s)	367
BstV1I	GCAGC	1 cut(s)	243
BstXI	CCANNNNNNTGG	1 cut(s)	337
BsuRI	GGCC	1 cut(s)	22
BtgZI	GCGATG	1 cut(s)	392
BtsCI	GGATG	1 cut(s)	286
Cac8I	GCNNGC	1 cut(s)	6
CaiI	CAGNNNCTG	1 cut(s)	116
Cfr10I	RCCGGY	1 cut(s)	22
Cfr13I	GGNCC	1 cut(s)	340
Csp6I	GTAC	2 cut(s)	321, 400
CviJI	RGCY	9 cut(s)	8, 22, 89, 104, 193, 220, 256, 385, 397
CviKI_1	RGCY	9 cut(s)	8, 22, 89, 104, 193, 220, 256, 385, 397
CviQI	GTAC	2 cut(s)	321, 400
DpnI	GATC	2 cut(s)	43, 51
DpnII	GATC	2 cut(s)	41, 49
EaeI	YGGCCR	1 cut(s)	20
Eam1104I	CTCTTC	1 cut(s)	114
EarI	CTCTTC	1 cut(s)	114
Eco130I	CCWWGG	1 cut(s)	343
Eco47I	GGWCC	1 cut(s)	340
Eco57I	CTGAAG	1 cut(s)	138
EcoT14I	CCWWGG	1 cut(s)	343
ErhI	CCWWGG	1 cut(s)	343
FaiI	YATR	1 cut(s)	19
FbaI	TGATCA	1 cut(s)	49
Fnu4HI	GCNGC	1 cut(s)	257
FokI	GGATG	1 cut(s)	293
Fsp4HI	GCNGC	1 cut(s)	257
GluI	GCNGC	1 cut(s)	257
HaeIII	GGCC	1 cut(s)	22
HapII	CCGG	1 cut(s)	23
HinfI	GANTC	4 cut(s)	37, 70, 107, 113
HpaII	CCGG	1 cut(s)	23
HphI	GGTGA	1 cut(s)	36
Hpy188I	TCNGA	5 cut(s)	54, 112, 118, 301, 313
Hpy188III	TCNNGA	1 cut(s)	76
HpyAV	CCTTC	2 cut(s)	77, 94
HpyCH4III	ACNGT	2 cut(s)	320, 390
HpyCH4V	TGCA	2 cut(s)	242, 284
HpyF10VI	GCNNNNNNNGC	1 cut(s)	226
Ksp22I	TGATCA	1 cut(s)	49
Kzo9I	GATC	2 cut(s)	41, 49
LmnI	GCTCC	1 cut(s)	86
LpnPI	CCDG	7 cut(s)	36, 60, 175, 273, 309, 355, 364
Lsp1109I	GCAGC	1 cut(s)	243
LweI	GCATC	1 cut(s)	271
MaeIII	GTNAC	1 cut(s)	25
MalI	GATC	2 cut(s)	43, 51
MboI	GATC	2 cut(s)	41, 49
MboII	GAAGA	3 cut(s)	109, 131, 247
MluCI	AATT	3 cut(s)	245, 303, 361
MlyI	GAGTC	1 cut(s)	79
MnlI	CCTC	6 cut(s)	48, 100, 115, 160, 265, 387
MspI	CCGG	1 cut(s)	23
MwoI	GCNNNNNNNGC	1 cut(s)	226
NdeII	GATC	2 cut(s)	41, 49
NlaIV	GGNNCC	3 cut(s)	88, 328, 349
PfeI	GAWTC	3 cut(s)	37, 107, 113
PkrI	GCNGC	1 cut(s)	258
PleI	GAGTC	1 cut(s)	78
PpsI	GAGTC	1 cut(s)	78
PspN4I	GGNNCC	3 cut(s)	88, 328, 349
PspPI	GGNCC	1 cut(s)	340
PstNI	CAGNNNCTG	1 cut(s)	116
RsaI	GTAC	2 cut(s)	322, 401
RsaNI	GTAC	2 cut(s)	321, 400
SatI	GCNGC	1 cut(s)	257
Sau3AI	GATC	2 cut(s)	41, 49
Sau96I	GGNCC	1 cut(s)	340
SchI	GAGTC	1 cut(s)	79
SetI	ASST	4 cut(s)	49, 135, 222, 276
SfaNI	GCATC	1 cut(s)	271
SfcI	CTRYAG	1 cut(s)	367
SinI	GGWCC	1 cut(s)	340
Sse9I	AATT	3 cut(s)	245, 303, 361
StyI	CCWWGG	1 cut(s)	343
TaaI	ACNGT	2 cut(s)	320, 390
TaqI	TCGA	2 cut(s)	35, 40
TasI	AATT	3 cut(s)	245, 303, 361
TatI	WGTACW	2 cut(s)	320, 399
TfiI	GAWTC	3 cut(s)	37, 107, 113
TseI	GCWGC	1 cut(s)	256
TspDTI	ATGAA	1 cut(s)	248
VpaK11BI	GGWCC	1 cut(s)	340
XapI	RAATTY	1 cut(s)	361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.