RLG00000033854

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0018250
Physical Location & Seq
Reverse (-)
33147212 .. 33148038
827 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033854

Sequence Viewer

Length: 504 bp
ATGGATCAGTCTCACAAACCTAGAAGACCGAAATCCCGAGAAATCAAAGTGCAGCGATGTCGGTTCTGGCACAAAGATCAATATCGGGTCGCTGAGTTTTGGGGCTTAGAGCTCGATGGCGAGTTCGAGAAAGTTGGGGGTGGAGGTTCTATCCAAGTACATGGACGAGGCATCATTGGAGATGGACGTCGGCAACGGCGGCTTAGACCTCCATCTCCAAACCTCCTCCAGATCCCGGCCATCGCCAACCAGTTCAAGTCCATATCGCCTCAGCCGGAGAGTCCAAACTTGATTCTCGCCGACGCCTCCCTCGACAACCCAGAAGGCTGGCCTGCTTCTGATAAAGCTGGCCCGGGACACCATCGCCTCCGGCGAAGGCCTAGACAAGGTGCTGGACTATGCCATCAGGGCGGCCAAGTCGTTCGAGCCGTGTGCTGTAGACGACGAGCCAGGTGTGCCGCCGTGTCGTCGCCTGATAAGGGGTCTTGTAGTGACGGCCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

168

Amino Acids

18.58

Weight (kDa)

10.61

Isoelectric Point (pI)

70.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 190
AccI GTMKAC 1 cut(s) 439
AciI CCGC 3 cut(s) 199, 411, 459
AclWI GGATC 2 cut(s) 12, 226
AcoI YGGCCR 3 cut(s) 237, 412, 496
AcyI GRCGYC 2 cut(s) 187, 303
AfaI GTAC 1 cut(s) 159
AfiI CCNNNNNNNGG 3 cut(s) 235, 386, 479
AgsI TTSAA 1 cut(s) 256
AjnI CCWGG 1 cut(s) 449
AluBI AGCT 2 cut(s) 112, 347
AluI AGCT 2 cut(s) 112, 347
Alw21I GWGCWC 1 cut(s) 114
Alw26I GTCTC 1 cut(s) 15
AlwI GGATC 2 cut(s) 12, 226
Ama87I CYCGRG 2 cut(s) 36, 352
AoxI GGCC 6 cut(s) 237, 329, 349, 377, 412, 496
ApeKI GCWGC 1 cut(s) 52
AspS9I GGNCC 1 cut(s) 350
AsuC2I CCSGG 3 cut(s) 236, 353, 354
AvaI CYCGRG 2 cut(s) 36, 352
BanII GRGCYC 1 cut(s) 114
BbsI GAAGAC 1 cut(s) 31
Bbv12I GWGCWC 1 cut(s) 114
BbvCI CCTCAGC 1 cut(s) 270
BbvI GCAGC 1 cut(s) 64
BccI CCATC 6 cut(s) 110, 176, 220, 248, 369, 411
BceAI ACGGC 3 cut(s) 212, 413, 446
BcgI CGANNNNNNTGC 4 cut(s) 41, 75, 414, 448
BciT130I CCWGG 1 cut(s) 451
BcnI CCSGG 3 cut(s) 236, 353, 354
BcoDI GTCTC 1 cut(s) 15
BfaI CTAG 2 cut(s) 21, 381
BfmI CTRYAG 1 cut(s) 436
BglI GCCNNNNNGGC 1 cut(s) 408
BisI GCNGC 4 cut(s) 53, 200, 412, 459
BlsI GCNGC 4 cut(s) 54, 201, 413, 460
Bme1390I CCNGG 4 cut(s) 236, 353, 354, 451
BmeT110I CYCGRG 2 cut(s) 36, 352
BmgT120I GGNCC 1 cut(s) 350
BmrFI CCNGG 4 cut(s) 236, 353, 354, 451
BmsI GCATC 1 cut(s) 180
BpiI GAAGAC 1 cut(s) 31
BpmI CTGGAG 1 cut(s) 212
Bpu10I CCTNAGC 1 cut(s) 270
BpuMI CCSGG 3 cut(s) 236, 353, 354
BsaBI GATNNNNATC 1 cut(s) 81
BsaHI GRCGYC 2 cut(s) 187, 303
BsaJI CCNNGG 1 cut(s) 352
Bsc4I CCNNNNNNNGG 3 cut(s) 235, 386, 479
Bse118I RCCGGY 1 cut(s) 498
Bse1I ACTGG 1 cut(s) 250
Bse8I GATNNNNATC 1 cut(s) 81
BseBI CCWGG 1 cut(s) 451
BseDI CCNNGG 1 cut(s) 352
BseJI GATNNNNATC 1 cut(s) 81
BseLI CCNNNNNNNGG 3 cut(s) 235, 386, 479
BseMII CTCAG 2 cut(s) 84, 284
BseNI ACTGG 1 cut(s) 250
BseRI GAGGAG 1 cut(s) 215
BseX3I CGGCCG 1 cut(s) 496
BseXI GCAGC 1 cut(s) 64
BsgI GTGCAG 1 cut(s) 71
Bsh1285I CGRYCG 1 cut(s) 499
BshFI GGCC 6 cut(s) 239, 331, 351, 379, 414, 498
BsiEI CGRYCG 1 cut(s) 499
BsiHKAI GWGCWC 1 cut(s) 114
BsiHKCI CYCGRG 2 cut(s) 36, 352
BsiSI CCGG 5 cut(s) 236, 275, 353, 370, 499
BslFI GGGAC 1 cut(s) 369
BslI CCNNNNNNNGG 3 cut(s) 235, 386, 479
BsmAI GTCTC 1 cut(s) 15
BsmFI GGGAC 1 cut(s) 369
BsnI GGCC 6 cut(s) 239, 331, 351, 379, 414, 498
BsoBI CYCGRG 2 cut(s) 36, 352
Bsp1286I GDGCHC 1 cut(s) 114
Bsp143I GATC 3 cut(s) 4, 76, 231
BspACI CCGC 3 cut(s) 199, 411, 459
BspANI GGCC 6 cut(s) 239, 331, 351, 379, 414, 498
BspCNI CTCAG 2 cut(s) 85, 283
BspPI GGATC 2 cut(s) 12, 226
BsrFI RCCGGY 1 cut(s) 498
BsrI ACTGG 1 cut(s) 250
BssAI RCCGGY 1 cut(s) 498
BssECI CCNNGG 1 cut(s) 352
BssMI GATC 3 cut(s) 4, 76, 231
BssNI GRCGYC 2 cut(s) 187, 303
Bst2UI CCWGG 1 cut(s) 451
BstACI GRCGYC 2 cut(s) 187, 303
BstC8I GCNNGC 3 cut(s) 329, 333, 349
BstDEI CTNAG 4 cut(s) 93, 106, 203, 270
BstENI CCTNNNNNAGG 1 cut(s) 384
BstKTI GATC 3 cut(s) 7, 79, 234
BstMAI GTCTC 1 cut(s) 15
BstMBI GATC 3 cut(s) 4, 76, 231
BstMCI CGRYCG 1 cut(s) 499
BstMWI GCNNNNNNNGC 3 cut(s) 199, 408, 455
BstNI CCWGG 1 cut(s) 451
BstSCI CCNGG 4 cut(s) 234, 351, 352, 449
BstSFI CTRYAG 1 cut(s) 436
BstV1I GCAGC 1 cut(s) 64
BstV2I GAAGAC 1 cut(s) 31
BstX2I RGATCY 1 cut(s) 231
BstXI CCANNNNNNTGG 2 cut(s) 161, 327
BstYI RGATCY 1 cut(s) 231
BstZI CGGCCG 1 cut(s) 496
BsuRI GGCC 6 cut(s) 239, 331, 351, 379, 414, 498
BtgZI GCGATG 3 cut(s) 70, 226, 347
Cac8I GCNNGC 3 cut(s) 329, 333, 349
Cfr10I RCCGGY 1 cut(s) 498
Cfr13I GGNCC 1 cut(s) 350
Cfr9I CCCGGG 1 cut(s) 352
CseI GACGC 1 cut(s) 311
Csp6I GTAC 1 cut(s) 158
CviAII CATG 1 cut(s) 161
CviQI GTAC 1 cut(s) 158
DdeI CTNAG 4 cut(s) 93, 106, 203, 270
DpnI GATC 3 cut(s) 6, 78, 233
DpnII GATC 3 cut(s) 4, 76, 231
EaeI YGGCCR 3 cut(s) 237, 412, 496
EagI CGGCCG 1 cut(s) 496
Ecl136II GAGCTC 1 cut(s) 112
EclXI CGGCCG 1 cut(s) 496
Eco147I AGGCCT 1 cut(s) 379
Eco24I GRGCYC 1 cut(s) 114
Eco52I CGGCCG 1 cut(s) 496
Eco53kI GAGCTC 1 cut(s) 112
Eco88I CYCGRG 2 cut(s) 36, 352
EcoICRI GAGCTC 1 cut(s) 112
EcoNI CCTNNNNNAGG 1 cut(s) 384
EcoRII CCWGG 1 cut(s) 449
EcoT38I GRGCYC 1 cut(s) 114
FaeI CATG 1 cut(s) 164
FaiI YATR 3 cut(s) 162, 263, 400
FaqI GGGAC 1 cut(s) 369
FatI CATG 1 cut(s) 160
FblI GTMKAC 1 cut(s) 439
Fnu4HI GCNGC 4 cut(s) 53, 200, 412, 459
FriOI GRGCYC 1 cut(s) 114
Fsp4HI GCNGC 4 cut(s) 53, 200, 412, 459
FspBI CTAG 2 cut(s) 21, 381
GluI GCNGC 4 cut(s) 53, 200, 412, 459
GsuI CTGGAG 1 cut(s) 212
HaeIII GGCC 6 cut(s) 239, 331, 351, 379, 414, 498
HapII CCGG 5 cut(s) 236, 275, 353, 370, 499
HgaI GACGC 1 cut(s) 311
Hin1I GRCGYC 2 cut(s) 187, 303
Hin1II CATG 1 cut(s) 164
HinfI GANTC 2 cut(s) 280, 292
HpaII CCGG 5 cut(s) 236, 275, 353, 370, 499
Hpy166II GTNNAC 1 cut(s) 440
Hpy188I TCNGA 1 cut(s) 340
Hpy188III TCNNGA 3 cut(s) 36, 127, 229
Hpy8I GTNNAC 1 cut(s) 440
Hpy99I CGWCG 4 cut(s) 192, 305, 447, 472
HpyAV CCTTC 2 cut(s) 317, 369
HpyCH4IV ACGT 1 cut(s) 187
HpyCH4V TGCA 1 cut(s) 52
HpyF10VI GCNNNNNNNGC 3 cut(s) 199, 408, 455
HpyF3I CTNAG 4 cut(s) 93, 106, 203, 270
HpySE526I ACGT 1 cut(s) 187
Hsp92I GRCGYC 2 cut(s) 187, 303
Hsp92II CATG 1 cut(s) 164
Kzo9I GATC 3 cut(s) 4, 76, 231
Lsp1109I GCAGC 1 cut(s) 64
LweI GCATC 1 cut(s) 180
MaeI CTAG 2 cut(s) 21, 381
MaeII ACGT 1 cut(s) 187
MaeIII GTNAC 1 cut(s) 491
MalI GATC 3 cut(s) 6, 78, 233
MboI GATC 3 cut(s) 4, 76, 231
MboII GAAGA 1 cut(s) 36
MflI RGATCY 1 cut(s) 231
MhlI GDGCHC 1 cut(s) 114
MlyI GAGTC 1 cut(s) 289
MnlI CCTC 9 cut(s) 137, 161, 219, 233, 236, 279, 316, 320, 377
MspI CCGG 5 cut(s) 236, 275, 353, 370, 499
MspR9I CCNGG 4 cut(s) 236, 353, 354, 451
MvaI CCWGG 1 cut(s) 451
MwoI GCNNNNNNNGC 3 cut(s) 199, 408, 455
NciI CCSGG 3 cut(s) 236, 353, 354
NdeII GATC 3 cut(s) 4, 76, 231
NlaIII CATG 1 cut(s) 164
NmuCI GTSAC 1 cut(s) 491
PceI AGGCCT 1 cut(s) 379
PcsI WCGNNNNNNNCGW 3 cut(s) 309, 370, 426
PfeI GAWTC 1 cut(s) 292
PkrI GCNGC 4 cut(s) 54, 201, 413, 460
PleI GAGTC 1 cut(s) 288
PpsI GAGTC 1 cut(s) 288
Psp124BI GAGCTC 1 cut(s) 114
Psp6I CCWGG 1 cut(s) 449
PspGI CCWGG 1 cut(s) 449
PspPI GGNCC 1 cut(s) 350
PsuI RGATCY 1 cut(s) 231
RsaI GTAC 1 cut(s) 159
RsaNI GTAC 1 cut(s) 158
SacI GAGCTC 1 cut(s) 114
SatI GCNGC 4 cut(s) 53, 200, 412, 459
Sau3AI GATC 3 cut(s) 4, 76, 231
Sau96I GGNCC 1 cut(s) 350
SchI GAGTC 1 cut(s) 289
ScrFI CCNGG 4 cut(s) 236, 353, 354, 451
SduI GDGCHC 1 cut(s) 114
SetI ASST 9 cut(s) 22, 114, 148, 190, 211, 225, 349, 391, 455
SfaNI GCATC 1 cut(s) 180
SfcI CTRYAG 1 cut(s) 436
SmaI CCCGGG 1 cut(s) 354
SseBI AGGCCT 1 cut(s) 379
SsiI CCGC 3 cut(s) 199, 411, 459
SspMI CTAG 2 cut(s) 21, 381
SstI GAGCTC 1 cut(s) 114
StuI AGGCCT 1 cut(s) 379
StyD4I CCNGG 4 cut(s) 234, 351, 352, 449
TaiI ACGT 1 cut(s) 190
TaqI TCGA 4 cut(s) 114, 126, 312, 424
TaqII GACCGA 1 cut(s) 43
TatI WGTACW 1 cut(s) 157
TauI GCSGC 3 cut(s) 202, 414, 461
TfiI GAWTC 1 cut(s) 292
TseFI GTSAC 1 cut(s) 491
TseI GCWGC 1 cut(s) 52
Tsp45I GTSAC 1 cut(s) 491
TspMI CCCGGG 1 cut(s) 352
XagI CCTNNNNNAGG 1 cut(s) 384
XmaI CCCGGG 1 cut(s) 352
XmiI GTMKAC 1 cut(s) 439
XspI CTAG 2 cut(s) 21, 381
ZraI GACGTC 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.