Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0018250

Physical Location & Seq

Genomic Coordinates Reverse (-)

79570259 .. 79570756

Gene Structure 498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG509400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGATCAGTCTCACAAACCCAGAAGACCCAAAACTCATCTCGACGATTCAACCTCCATCCGAGGAGGACTATGGCCATCTTCAACAATTCCTTCCATGAAGAACTTCGACTCTCTAGCAGCAGTCCATCTCGAAATCGAGAGAATCAAAGACTATATCAACGTCGGTTCTGGCACGAAGATCAATATCGGGTCGCCGAGTTTCTGGGTTAAGAGCTCGATGGCGAGTTCGAGAAAGTTGGGGGTGGAGGTTCTGTCCAAGTACATGAGTGATATTCAGACGAGGCATCATTGCAGACGGACGTCGGCGATGGCGGCTTCAACCTCCCTCACCTTCCGCCTCCAGATCCCGGTCATCTCCAACCTGTTCAAGTCCATATCGCCTCAGCCGGAGAGTCCGAATCTGATTCTCACCGACGCCTCGCTCGACAACCCGGAAGGGTGGCCCGCTTCTGATAAAGCTGGCCCGGGACACCATCGCCTCCGGCGAAGGCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

QWRF

Protein Analysis

165

Amino Acids

18.33

Weight (kDa)

10.13

Isoelectric Point (pI)

72.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018250)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000033854
rosa_multiflora	Rmu_sc0013620.1_g000003 Rmu_ssc0000261.1_g000024
rosa_roxburghii	Rroxscaffold_6G00412340
rosa_samantha	Rh1AG295400 Rh3CG228500 Rh4DG109400 Rh5AG223500 Rh5BG304700 Rh5DG509400 Rh6AG327600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	305
AciI	CCGC	3 cut(s)	314, 337, 447
AclWI	GGATC	2 cut(s)	12, 340
AcoI	YGGCCR	1 cut(s)	74
AcyI	GRCGYC	2 cut(s)	302, 417
AfaI	GTAC	1 cut(s)	263
AfiI	CCNNNNNNNGG	1 cut(s)	349
AgsI	TTSAA	4 cut(s)	51, 84, 321, 370
AluBI	AGCT	2 cut(s)	216, 461
AluI	AGCT	2 cut(s)	216, 461
Alw21I	GWGCWC	1 cut(s)	218
Alw26I	GTCTC	1 cut(s)	15
AlwI	GGATC	2 cut(s)	12, 340
Ama87I	CYCGRG	1 cut(s)	466
AoxI	GGCC	4 cut(s)	74, 443, 463, 491
ApeKI	GCWGC	1 cut(s)	119
Asp700I	GAANNNNTTC	1 cut(s)	104
AspS9I	GGNCC	3 cut(s)	444, 464, 492
AsuC2I	CCSGG	4 cut(s)	350, 434, 467, 468
AsuHPI	GGTGA	2 cut(s)	322, 403
AvaI	CYCGRG	1 cut(s)	466
BalI	TGGCCA	1 cut(s)	76
BanII	GRGCYC	1 cut(s)	218
BbsI	GAAGAC	1 cut(s)	31
Bbv12I	GWGCWC	1 cut(s)	218
BbvCI	CCTCAGC	1 cut(s)	384
BbvI	GCAGC	1 cut(s)	131
BccI	CCATC	6 cut(s)	65, 85, 135, 214, 304, 483
BcnI	CCSGG	4 cut(s)	350, 434, 467, 468
BcoDI	GTCTC	1 cut(s)	15
BfaI	CTAG	1 cut(s)	116
BisI	GCNGC	2 cut(s)	120, 315
BlsI	GCNGC	2 cut(s)	121, 316
Bme1390I	CCNGG	4 cut(s)	350, 434, 467, 468
BmeT110I	CYCGRG	1 cut(s)	466
BmgT120I	GGNCC	3 cut(s)	444, 464, 492
BmrFI	CCNGG	4 cut(s)	350, 434, 467, 468
BmsI	GCATC	1 cut(s)	295
BoxI	GACNNNNGTC	1 cut(s)	301
BpiI	GAAGAC	1 cut(s)	31
BpmI	CTGGAG	1 cut(s)	326
Bpu10I	CCTNAGC	1 cut(s)	384
BpuMI	CCSGG	4 cut(s)	350, 434, 467, 468
BsaBI	GATNNNNATC	1 cut(s)	185
BsaHI	GRCGYC	2 cut(s)	302, 417
BsaJI	CCNNGG	2 cut(s)	61, 466
BsaXI	ACNNNNNCTCC	2 cut(s)	239, 269
Bsc4I	CCNNNNNNNGG	1 cut(s)	349
Bse3DI	GCAATG	1 cut(s)	289
Bse8I	GATNNNNATC	1 cut(s)	185
BseDI	CCNNGG	2 cut(s)	61, 466
BseGI	GGATG	1 cut(s)	57
BseJI	GATNNNNATC	1 cut(s)	185
BseLI	CCNNNNNNNGG	1 cut(s)	349
BseMI	GCAATG	1 cut(s)	289
BseMII	CTCAG	1 cut(s)	398
BseRI	GAGGAG	1 cut(s)	78
BseXI	GCAGC	1 cut(s)	131
BshFI	GGCC	4 cut(s)	76, 445, 465, 493
BsiHKAI	GWGCWC	1 cut(s)	218
BsiHKCI	CYCGRG	1 cut(s)	466
BsiSI	CCGG	5 cut(s)	350, 389, 434, 467, 484
BslFI	GGGAC	1 cut(s)	483
BslI	CCNNNNNNNGG	1 cut(s)	349
BsmAI	GTCTC	1 cut(s)	15
BsmFI	GGGAC	1 cut(s)	483
BsnI	GGCC	4 cut(s)	76, 445, 465, 493
BsoBI	CYCGRG	1 cut(s)	466
Bsp1286I	GDGCHC	1 cut(s)	218
Bsp143I	GATC	3 cut(s)	4, 180, 345
BspACI	CCGC	3 cut(s)	314, 337, 447
BspANI	GGCC	4 cut(s)	76, 445, 465, 493
BspCNI	CTCAG	1 cut(s)	397
BspPI	GGATC	2 cut(s)	12, 340
BsrDI	GCAATG	1 cut(s)	289
BssECI	CCNNGG	2 cut(s)	61, 466
BssMI	GATC	3 cut(s)	4, 180, 345
BssNI	GRCGYC	2 cut(s)	302, 417
BstACI	GRCGYC	2 cut(s)	302, 417
BstC8I	GCNNGC	2 cut(s)	447, 463
BstDEI	CTNAG	1 cut(s)	384
BstF5I	GGATG	1 cut(s)	57
BstKTI	GATC	3 cut(s)	7, 183, 348
BstMAI	GTCTC	1 cut(s)	15
BstMBI	GATC	3 cut(s)	4, 180, 345
BstMWI	GCNNNNNNNGC	1 cut(s)	314
BstPAI	GACNNNNGTC	1 cut(s)	301
BstSCI	CCNGG	4 cut(s)	348, 432, 465, 466
BstV1I	GCAGC	1 cut(s)	131
BstV2I	GAAGAC	1 cut(s)	31
BstX2I	RGATCY	1 cut(s)	345
BstYI	RGATCY	1 cut(s)	345
BsuRI	GGCC	4 cut(s)	76, 445, 465, 493
BtgZI	GCGATG	2 cut(s)	323, 461
BtsCI	GGATG	1 cut(s)	57
Cac8I	GCNNGC	2 cut(s)	447, 463
Cfr13I	GGNCC	3 cut(s)	444, 464, 492
Cfr9I	CCCGGG	1 cut(s)	466
CseI	GACGC	1 cut(s)	425
Csp6I	GTAC	1 cut(s)	262
CviAII	CATG	2 cut(s)	97, 265
CviJI	RGCY	8 cut(s)	76, 216, 317, 388, 445, 461, 465, 493
CviKI_1	RGCY	8 cut(s)	76, 216, 317, 388, 445, 461, 465, 493
CviQI	GTAC	1 cut(s)	262
DdeI	CTNAG	1 cut(s)	384
DpnI	GATC	3 cut(s)	6, 182, 347
DpnII	GATC	3 cut(s)	4, 180, 345
EaeI	YGGCCR	1 cut(s)	74
EciI	GGCGGA	1 cut(s)	326
Ecl136II	GAGCTC	1 cut(s)	216
Eco24I	GRGCYC	1 cut(s)	218
Eco53kI	GAGCTC	1 cut(s)	216
Eco88I	CYCGRG	1 cut(s)	466
EcoICRI	GAGCTC	1 cut(s)	216
EcoO109I	RGGNCCY	1 cut(s)	492
EcoT38I	GRGCYC	1 cut(s)	218
FaeI	CATG	2 cut(s)	100, 268
FaiI	YATR	5 cut(s)	73, 98, 156, 266, 377
FaqI	GGGAC	1 cut(s)	483
FatI	CATG	2 cut(s)	96, 264
FauI	CCCGC	1 cut(s)	454
Fnu4HI	GCNGC	2 cut(s)	120, 315
FokI	GGATG	1 cut(s)	44
FriOI	GRGCYC	1 cut(s)	218
Fsp4HI	GCNGC	2 cut(s)	120, 315
FspBI	CTAG	1 cut(s)	116
GluI	GCNGC	2 cut(s)	120, 315
GsuI	CTGGAG	1 cut(s)	326
HaeIII	GGCC	4 cut(s)	76, 445, 465, 493
HapII	CCGG	5 cut(s)	350, 389, 434, 467, 484
HgaI	GACGC	1 cut(s)	425
Hin1I	GRCGYC	2 cut(s)	302, 417
Hin1II	CATG	2 cut(s)	100, 268
HinfI	GANTC	6 cut(s)	47, 110, 144, 394, 400, 406
HpaII	CCGG	5 cut(s)	350, 389, 434, 467, 484
HphI	GGTGA	2 cut(s)	322, 403
Hpy188I	TCNGA	5 cut(s)	62, 279, 399, 405, 454
Hpy188III	TCNNGA	5 cut(s)	41, 131, 139, 231, 343
Hpy99I	CGWCG	4 cut(s)	47, 167, 307, 419
HpyAV	CCTTC	4 cut(s)	102, 343, 431, 483
HpyCH4IV	ACGT	2 cut(s)	162, 302
HpyCH4V	TGCA	1 cut(s)	294
HpyF10VI	GCNNNNNNNGC	1 cut(s)	314
HpyF3I	CTNAG	1 cut(s)	384
HpySE526I	ACGT	2 cut(s)	162, 302
Hsp92I	GRCGYC	2 cut(s)	302, 417
Hsp92II	CATG	2 cut(s)	100, 268
Kzo9I	GATC	3 cut(s)	4, 180, 345
Lsp1109I	GCAGC	1 cut(s)	131
LweI	GCATC	1 cut(s)	295
MaeI	CTAG	1 cut(s)	116
MaeII	ACGT	2 cut(s)	162, 302
MalI	GATC	3 cut(s)	6, 182, 347
MboI	GATC	3 cut(s)	4, 180, 345
MboII	GAAGA	4 cut(s)	36, 72, 112, 190
MflI	RGATCY	1 cut(s)	345
MhlI	GDGCHC	1 cut(s)	218
MlsI	TGGCCA	1 cut(s)	76
MluCI	AATT	1 cut(s)	87
MluNI	TGGCCA	1 cut(s)	76
MlyI	GAGTC	2 cut(s)	104, 403
MmeI	TCCRAC	1 cut(s)	384
Mox20I	TGGCCA	1 cut(s)	76
MroXI	GAANNNNTTC	1 cut(s)	104
MscI	TGGCCA	1 cut(s)	76
MseI	TTAA	1 cut(s)	210
Msp20I	TGGCCA	1 cut(s)	76
MspI	CCGG	5 cut(s)	350, 389, 434, 467, 484
MspR9I	CCNGG	4 cut(s)	350, 434, 467, 468
MwoI	GCNNNNNNNGC	1 cut(s)	314
NciI	CCSGG	4 cut(s)	350, 434, 467, 468
NdeII	GATC	3 cut(s)	4, 180, 345
NlaIII	CATG	2 cut(s)	100, 268
NmeAIII	GCCGAG	1 cut(s)	222
PcsI	WCGNNNNNNNCGW	2 cut(s)	423, 484
PdmI	GAANNNNTTC	1 cut(s)	104
PfeI	GAWTC	4 cut(s)	47, 144, 400, 406
PkrI	GCNGC	2 cut(s)	121, 316
PleI	GAGTC	2 cut(s)	104, 402
PpsI	GAGTC	2 cut(s)	104, 402
PshAI	GACNNNNGTC	1 cut(s)	301
Psp124BI	GAGCTC	1 cut(s)	218
PspPI	GGNCC	3 cut(s)	444, 464, 492
PsuI	RGATCY	1 cut(s)	345
RsaI	GTAC	1 cut(s)	263
RsaNI	GTAC	1 cut(s)	262
SacI	GAGCTC	1 cut(s)	218
SaqAI	TTAA	1 cut(s)	210
SatI	GCNGC	2 cut(s)	120, 315
Sau3AI	GATC	3 cut(s)	4, 180, 345
Sau96I	GGNCC	3 cut(s)	444, 464, 492
SchI	GAGTC	2 cut(s)	104, 403
ScrFI	CCNGG	4 cut(s)	350, 434, 467, 468
SduI	GDGCHC	1 cut(s)	218
SetI	ASST	9 cut(s)	56, 165, 218, 252, 305, 326, 335, 366, 463
SfaNI	GCATC	1 cut(s)	295
SmaI	CCCGGG	1 cut(s)	468
Sse9I	AATT	1 cut(s)	87
SsiI	CCGC	3 cut(s)	314, 337, 447
SspMI	CTAG	1 cut(s)	116
SstI	GAGCTC	1 cut(s)	218
StyD4I	CCNGG	4 cut(s)	348, 432, 465, 466
TaiI	ACGT	2 cut(s)	165, 305
TaqI	TCGA	7 cut(s)	42, 108, 132, 138, 218, 230, 426
TasI	AATT	1 cut(s)	87
TatI	WGTACW	1 cut(s)	261
TauI	GCSGC	1 cut(s)	317
TfiI	GAWTC	4 cut(s)	47, 144, 400, 406
Tru1I	TTAA	1 cut(s)	210
Tru9I	TTAA	1 cut(s)	210
TseI	GCWGC	1 cut(s)	119
TspDTI	ATGAA	1 cut(s)	113
TspGWI	ACGGA	1 cut(s)	313
TspMI	CCCGGG	1 cut(s)	466
XmaI	CCCGGG	1 cut(s)	466
XmnI	GAANNNNTTC	1 cut(s)	104
XspI	CTAG	1 cut(s)	116
ZraI	GACGTC	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.